Glutamate dehydrogenases (GDH; EC 1.4.1.2 and EC 1.4.1.4) play a pivotal role in fungal nitrogen metabolism by catalyzing the reversible conversion of 2-ketoglutarate to L-glutamate. In fungi, NAD- as well as NADP-dependent GDHs function at the interface of ammonia assimilation and glutamate catabolism, contributing to growth, differentiation, and morphogenesis. The evolution of fungi to adapt and occupy various ecological niches is closely aligned to the diversity of regulations of the functions of GDHs, their localisation and biochemical characteristics. This review explores the biochemical, molecular, and structural studies on fungal GDHs, emphasizing their catalytic diversity, coenzyme specificity, and regulatory mechanisms, including phosphorylation, thiol modulation, and allosteric control. Structural elucidations of NADP-GDHs from Aspergillus niger, Aspergillus terreus, and Candida albicans provide new insights into cofactor binding, substrate recognition, and inhibitor interactions. Molecular analyses reveal distinct evolutionary trajectories for NAD- and NADP-GDHs across fungal taxa, with GDH-mediated transitions linked to morphogenetic processes such as the yeast-to-hypha (Y-H) switch, highlighting GDHs as promising antifungal drug targets. The comprehensive survey of fungal GDHs presented here emphasises their biochemical versatility, evolutionary significance, and translational potential in agriculture, biosensor development and in industry. The review also highlights gaps in our understanding of fungal GDHs and potential areas for further research.Supplementary InformationThe online version contains supplementary material available at 10.1186/s40694-026-00212-4.

BackgroundFungal volatile organic compounds (FVOCs) play key roles in fungal ecology, physiology, and biotechnological applications, but inconsistent sampling and analytical methods limit biological interpretation and cross-study comparability, underscoring the need for a standardized, validated workflow.ResultsWe developed and validated a polydimethylsiloxane (PDMS)–based volatilomics workflow and evaluated its performance across key methodological dimensions, including solvent extraction bias, static versus dynamic sampling, sorbent reuse, temporal emission resolution, and discrimination of physiological states. Solvent choice (dichloromethane vs. diethyl ether) influenced the quantitative recovery of individual compounds but did not affect the overall FVOC composition detected. Static PDMS and dynamic push–pull sampling produced distinct yet complementary volatilome profiles, with method-specific enrichment across compound classes. Reconditioned PDMS tubing performed equivalently to fresh tubing across repeated deployments, with no detectable decline in compound recovery and multivariate structure. Sequential 96-h sampling captured clear temporal emission patterns in both Trichoderma atroviride and Grosmannia clavigera, revealing species-specific emission trajectories consistent with metabolic stages. Application of the optimized workflow further distinguished T. atroviride morphotypes (white vs. green), which maintained distinct volatile profiles over time and exhibited morphotype-specific emission dynamics in key compounds.ConclusionsThe PDMS-based workflow presented here provides a robust and reproducible framework for FVOC analysis, effectively addressing methodological biases, resolving temporal emission dynamics, and discriminating among physiological states. Standardizing PDMS sampling and extraction substantially enhance the biological interpretability and comparability of FVOC data, enabling broader and more reliable applications in fungal ecology, physiology, and biotechnology.Supplementary InformationThe online version contains supplementary material available at 10.1186/s40694-026-00213-3.

Monascus spp. are highly valuable microbial resources with extensive applications in both the food and pharmaceutical industries. In the food industry, it is often used to impart unique colors and flavors to various food products via fermentation. In the pharmaceutical field, Monascus-fermented substrate is utilized in formulating natural medicines, which exhibit beneficial properties such as lipid-lowering, antioxidant, and anti-tumor effects. However, a critical gap exists: there is currently no dedicated database for the diverse species of Monascus and its secondary metabolites. To address this, this research aims to construct a comprehensive Monascus database that meets the needs of both the research community and industry. We successfully created the database FoodFungi (http://foodfungi.ddai.tech/). This database provides core information including: Basic details of Monascus strains; information on Monascus metabolites; relevant biological information of Monascus. Additionally, the FoodFungi database incorporates a specific function for evaluating changes in regulated Monascus products. The FoodFungi database serves as a crucial support for Monascus-related research and practical applications. By providing organized, accessible information and predictive tools, it effectively promotes the further utilization of Monascus resources and drives the industrial development of Monascus-based products.

Cyanodermella asteris is a fungal endophyte from Aster tataricus that produces plant hormones as well as a range of specialized metabolites. The aim of our study was to explore the potential of this endophytic fungus towards plant hormones besides the auxin indole-3-acetic acid which we recently identified. Here, we identified another hormone, jasmonic acid (JA), from culture medium extracts by LC-MS/MS and NMR. JA was also found in the hyphal fraction, but its de novo biosynthesis could not be stimulated by linolenic acid, a known precursor for JA biosynthesis in plants. The growth of C. asteris in media was not inhibited by JA. Only at high concentrations of 1 mM, an inhibition of biomass production was recorded. Putative genes encoding enzymes for JA biosynthesis were identified in the genome, and expression analyses showed an induction of one thioester hydrolase, possibly catalyzing saponification of JA-CoA to free JA. We also investigated its interaction with plant jasmonate biosynthesis and signaling mutants, aoc and jar, respectively, and found that the fungus can complement the JA-deficient phenotypes. Further understanding of the biology of JA biosynthesis on C. asteris as well as its interactions with plants is needed to exploit its potential use as a producer of JA.

Salicylic acid (SA) is an important plant hormone but is also produced by microorganisms. Contrary to the well-described roles and biosynthetic pathways of SA in plants, its role in fungal physiology and its biosynthesis within fungi remains largely unclear. Here, we sought to investigate the role of SA in the physiology of Trichoderma spp. and to identify fungal genes responsible for SA biosynthesis in Trichoderma virens, while applying and optimizing a transformation approach recently adapted for Trichoderma atroviride. Significant strain- and species-dependent differences in both SA biosynthesis and growth in the presence of exogenous SA were observed. Furthermore, in certain Trichoderma species SA biosynthesis turned out to be induced by the presence of plant volatile organic compounds (VOCs). Based on plant SA biosynthesis pathways, candidate fungal SA biosynthesis genes were screened and respective T. virens gene deletion mutants generated through application and optimization of an enhanced transformation approach. Gene deletion did not result in a decrease in SA biosynthesis, providing evidence that SA biosynthesis in T. virens is distinct from the canonical plant pathways. Although we were not able to identify genes responsible for SA biosynthesis in T. virens, we uncovered how certain Trichoderma and fungal phytopathogen species are affected by SA in their environment and how SA release by Trichoderma spp. can be affected by the presence of a plant host. Furthermore, we were able to optimize an approach to measuring phytohormones produced by Trichoderma spp. in plate culture and proved the applicability of an optimized transformation approach in T. virens.

During the past decades, the importance of fungal biotechnology in advancing a bioeconomy and a circular economy has been emphasized in both scientific literature, project proposals, awarded grants and social media. Filamentous fungi have been proven to provide sustainable solutions for various industrial applications, ranging from bioremediation and medicine to the production of food, feed, materials, chemicals and energy. This is where we are today, but where could tomorrow’s fungal biotechnology take us? How can the seemingly infinite potential of fungal biotechnology for a circular economy become unlocked? In this editorial, we will cover some of the critical aspects that we believe are essential for the success and impact of fungal biotechnology to a future bioeconomy.

Fusarium head blight, caused by Fusarium graminearum, is one of the most threatening fungal diseases of cereals worldwide. Current practices for control of F. graminearum are not always efficient, as epidemics still occur and there is low resistance in wheat varieties. Therefore, novel antifungal targets must be discovered by analyzing the molecular interaction between F. graminearum and its host. Fungal extracellular vesicles (EVs) are small membrane-bound compartments (30–1000 nm) that carry macromolecules and support fungal virulence, hence the disruption of EV production could lead to reduced fungal pathogenicity. However, EV study is limited by the lack of surface protein markers to aid in their characterization. Therefore, the aim of this report was to target a surface protein marker with an antibody, to unlock advanced EV characterization techniques. Using the list of potential EV markers for Candida albicans, we selected the tetraspanin-like Sur7 to perform immunogold microscopy, revealing that this protein is a surface marker of F. graminearum EVs. SUR7 is present on the surface of some but not all vesicles. EVs carrying SUR7 were larger than those without the marker, suggesting that there are subtypes of fungal EVs. The epitope recognized by the anti-Sur7 antibody is conserved in other Fusarium pathogens, making Sur7 a potential pan-Fusarium EV marker. Our results unlock techniques, such as immunoaffinity chromatography and antibody labeling, to track fungal EVs and understand their biogenesis, which may lead to the development of novel antifungals.Graphical abstractSupplementary InformationThe online version contains supplementary material available at 10.1186/s40694-025-00206-8.

Fungal-based biomaterials are emerging as sustainable alternatives to synthetic polymers, offering biodegradability and low environmental impact. However, the interaction between mycelium and 3D-printed biopolymers, particularly regarding mechanical performance, remains underexplored. This research investigates the tensile behavior of biopolymer specimens produced by Material Extrusion Additive Manufacturing (MEX AM), focusing on the effects of Fomes fomentarius mycelium colonization. The study examines how pre- and post-processing steps, as well as different 3D-printing infill patterns, influence mycelial growth and its mechanical impact. Both pure PLA and PLA_Hemp biopolymers were studied to assess the role of natural particles in fungal interaction and structural performance. The results indicate that mycelial colonization has a minor impact on the mechanical properties of PLA, while PLA_Hemp shows more pronounced, time-dependent effects. Environmental conditions such as humidity and incubation also affect mechanical performance, whereas certain pretreatments, like autoclaving, can significantly weaken the material. Overall, this work provides insight into the integration of mycelium within 3D-printing biopolymers, demonstrating the feasibility of hybrid biocomposites and highlighting both opportunities and challenges, thereby paving the way for more sustainable materials design and construction practices.

The genus Trichoderma (Hypocreaceae, Ascomycota) compromises over 400 known species, that are found in various soils, on plant surfaces and as plant endophytes. Interactions between the mycoparasitic Trichoderma spp. and beneficial ectomycorrhizal fungi such as Laccaria bicolor (Hydnangiaceae, Basidiomycota) can influence the structure of fungal communities and plant symbioses. In this study, we conducted in vitro dual-culture experiments involving L. bicolor and four Trichoderma strains (T. harzianum WM24a1, MS8a1, ES8g1, and T. atrobrunneum) to analyze their metabolic responses in relation to varying degrees of physical contact. Using integrated analyses of volatile organic compounds (VOCs), hyphal metabolomes, and secreted exudates, we uncovered strong contact- and strain-dependent growth inhibition patterns: Trichoderma growth was suppressed under shared headspace, whereas L. bicolor was more strongly inhibited under direct contact. Metabolomic profiling revealed distinct and strain-specific alterations in both VOC and soluble metabolite profiles during co-cultivation, with hundreds of discriminant mass features affected. Key metabolic pathways, including amino acid, carbohydrate, lipid, and secondary metabolite biosynthesis, showed differential enrichment depending on the interaction stage and fungal partner. These results demonstrate that Trichoderma–Laccaria interactions are mediated by dynamic, contact-specific chemical reprogramming and suggest that fungal recognition and competition involve coordinated changes in both volatile and non-volatile metabolite production. Our findings provide a foundation for exploring how such antagonistic interactions may influence tripartite communication in plant-associated microbial networks. They also highlight the potential role of both emitted and secreted fungal metabolites in shaping interaction dynamics through putative non-self-recognition mechanisms.Supplementary InformationThe online version contains supplementary material available at 10.1186/s40694-025-00204-w.

BackgroundFungal volatile organic compounds (fVOCs) serve as crucial mediators in ecological interactions and hold significant potential for applications in agriculture and biotechnology. Fungi establish inter-organism communication through volatile molecules, enabling them to regulate plant growth and interact with diverse soil-dwelling organisms. This study integrates a comprehensive literature survey and bibliometric analysis to capture the complexity and interdisciplinary nature of fVOC research, drawing on PubMed, Google Scholar, and Scopus databases spanning 2000 to 2023.ResultsThe findings highlight the role of fVOCs as essential chemical messengers in inter-organismic communication, their contribution to sustainable agricultural practices as plant growth promoters, and their significance in human sensory perception, particularly in culinary contexts. Our bibliometric analysis of 3,738 publications maps fVOC research trends worldwide using co-occurrence and -citation analyses. The latter uncovered an early research focus on yeast fermentation and antimicrobial activity, which has since expanded to sustainable agriculture, biofumigation, endophytic fungi, and the development of advanced analytical techniques. Emerging research clusters focus on plant–fungus communication, the biotechnological production of aroma compounds, and the influence of fVOCs on human sensory experiences.ConclusionsThe fVOC research field has matured during the last two decades. Promising avenues for future exploration include the improvement of crop resilience, the advancements of eco-friendly technologies, such as biological pest management or VOC-driven fertilisation, and a better understanding of the intricate volatile communication that drives fungal interactions with other kingdoms of life.