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The Evolutionary History of Daphniid α-Carbonic Anhydrase within Animalia.

Understanding the mechanisms that drive acid-base regulation in organisms is important, especially for organisms in aquatic habitats that experience rapidly fluctuating pH conditions. Previous studies have shown that carbonic anhydrases (CAs), a family of zinc metalloenzymes, are responsible for acid-base regulation in many organisms. Through the use of phylogenetic tools, this present study attempts to elucidate the evolutionary history of the α-CA superfamily, with particular interest in the emerging model aquatic organism Daphnia pulex. We provide one of the most extensive phylogenies of the evolution of α-CAs, with the inclusion of 261 amino acid sequences across taxa ranging from Cnidarians to Homo sapiens. While the phylogeny supports most of our previous understanding on the relationship of how α-CAs have evolved, we find that, contrary to expectations, amino acid conservation with bacterial α-CAs supports the supposition that extracellular α-CAs are the ancestral state of animal α-CAs. Furthermore, we show that two cytosolic and one GPI-anchored α-CA in Daphnia genus have homologs in sister taxa that are possible candidate genes to study for acid-base regulation. In addition, we provide further support for previous findings of a high rate of gene duplication within Daphnia genus, as compared with other organisms.

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Out with the old, in with the new? Younger Daphnia clones are competitively superior over centuries-old ancestors

A laboratory microcosm experiment was conducted to examine the roles of food quantity and food quality on the competitive abilities of clones of the keystone aquatic zooplankter, Daphnia pulicaria. Using methods of resurrection ecology, clones were established by hatching dormant eggs from sediment layers of a lake (South Center, MN, U.S.A) that were separated by centuries of environmental change (nutrient enrichment). Two sets of paired clones (“modern” vs. “ancient”) were competed against each other in a 2 × 2 factorial design of high/low food quantity and high/low food quality. Experimental carbon:phosphorus (C:P) ratios were designed to mimic food quantity and food quality parameters respective to each of the two time periods from which the clones were extracted to test whether clones are competitively superior under conditions representative of the time period in which they existed. Contrary to predictions, we found that “modern” clones were able to outcompete “ancient” clones under all food treatments. We discuss potential mechanisms (i.e., mutational input, viability of long-dormant eggs, differences in phenotypic plasticity) that may have differentially impacted the performance of experimental clones. Our results should aid in deciphering microevolutionary dynamics observed in resurrection ecology studies, a powerful tool that can illuminate adaptive dynamics of organisms to environmental changes on long-term (centuries-long) temporal scales.

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