Species Of Wood Mice Research Articles

Поширення та чисельність Sylvaemus uralensis (форма microps) у Дністровсько-Прутському міжріччі

Detailed data on the distribution and abundance of Sylvaemus uralensis in the Dnister-Prut interfluve are given. It is shown that this species of wood mice inhabits all natural regions of Moldova, can be trapped in any surveyed habitat, and often dominates in numbers. The specifics of habitat preferences and population dynamics of the pygmy wood mouse in the region by districts and main types of habitats are considered. It is shown that this species dominates in almost all landscapes and types of plant communities, with a strong association with ruderal and high-grass associations. With the forest habitats excluded, the total share of Sylvaemus uralensis in all other types of habitats by the landscape-geographic regions is as follows: Middle Dnister—33%, Bălți—28%, Codru Massif—34%, Budzhak—43%, Lower Dnister—52%; in total for the republic—42%. The issue of the vernacular name of Sylvaemus uralensis is discussed.

Dietary niche partitioning between sympatric wood mouse species (Muridae: Apodemus) revealed by DNA meta-barcoding analysis

Plant diets of 2 sympatric species of wood mice in Japan (Apodemus argenteus and A. speciosus) were determined by DNA meta-barcoding analyses of feces using the nucleotide sequences of the chloroplast trnL P6 loop intron region as a molecular marker. The 2 species showed a relatively large degree of niche overlap in plant dietary profiles, feeding mostly on acorn-producing Fagaceae species (assumed to be Quercus crispula). However, A. argenteus was less dependent on Fagaceae species than A. speciosus. Instead, A. argenteus had a wider niche breadth, feeding upon a wider range of plant families such as Betulaceae, Fabaceae, Oleaceae, Pinaceae, Rutaceae, Sapindaceae, Tiliaceae, and Ulmaceae, which were consumed only infrequently by A. speciosus. There was also evidence for species differences in diet across seasons. Oleaceae species (assumed to be Fraxinus mandshurica) were consumed by A. argenteus from June to August, and by A. speciosus from August to October. The results suggested that A. argenteus is a generalist feeder, and A. speciosus a specialist, and the 2 Apodemus species separate their dietary niches not only by the component plant species overall, but also by differences within seasons.

Estimation of Evolutionary Rates of Mitochondrial DNA in Two Japanese Wood Mouse Species Based on Calibrations with Quaternary Environmental Changes.

Reliable estimates of evolutionary rates of mitochondrial DNA might allow us to build realistic evolutionary scenarios covering broad time scales based on phylogenetic inferences. In the present study, we sought to obtain estimates of evolutionary rates in murine rodents using calibrations against historical biogeographic events. We first assumed that land-bridge-like structures that appeared intermittently at glacial maxima with 100,000-year intervals shaped the divergence patterns of cytochrome b (Cytb) sequences (1140 bp) of the larger Japanese wood mouse Apodemus speciosus. The comparison of sequences from peripheral remote islands that are separated from one another by deep straits allowed us to estimate mitochondrial DNA evolutionary rates (substitutions/site/million years) to be 0.027 to 0.036, with presumed calibrations from 140,000, 250,000, 350,000, and 440,000 years ago. Second, we addressed rapid expansion events inferred from analyses of the Cytb sequences of the lesser Japanese wood mouse A. argenteus. We detected five expansion signals in the dataset and established three categories based on the expansion parameter tau values: 3.9, 5.6-5.7, and 7.8-8.1. Considering that the climate became warmer 15,000, 53,000, and 115,000 years ago after preceding periods of rapid cooling, we calculated evolutionary rates to be 0.114, 0.047, and 0.031, respectively. This preliminary concept of the evolutionary rates on a time scale from 15,000 to 440,000 years ago for the wood mouse should be refined and tested in other species of murine rodents, including mice and rats.

Differentiation of cryptic wood mice species of the subgenus Sylvaemus under different ecogeographic conditions in the Northern Caucasus

Based on analysis of the frequencies of nonmetric cranial characters, the ratio of interpopulation and interspecific differences has been studied in populations of two genetically identified cryptic species of wood mice, A. uralensis and A. ponticus, living under different ecological conditions in the Northern Caucasus. Hybridization between these species has not been reported previously, but interspecific phenetic distances indicate that differences between them do not exceed the level characteristic of subspecies, with morphological differentiation between A. uralensis populations of the Central and Western Caucasus being weakly expressed. It is hypothesized that the low level of intra- and interspecific differences is explained by the sympatric and symbiotopic origin of both species in the Western Caucasus. This may account for the retention of their similarity in ecological requirements for the environment and, consequently, only slight morphological disparity in similar biotopes.

A novel approach to field identification of cryptic Apodemus wood mice: calls differ more than morphology

AbstractField identification of European wood mice Apodemus spp. is challenging due to their morphological resemblance and frequent sympatry. We developed discriminant functions based on body mass and acoustic variables of distress calls to identify three cryptic species of wood mice (Apodemus alpicola, Apodemus flavicollis and Apodemus sylvaticus) in Italy. We achieved an overall correct classification rate of 86–98%; the best results (100% correct classification) were obtained for Apodemus sylvaticus calls. This minimally invasive, effective and low‐cost method highlights the potential role of bioacoustics as a powerful tool for field discrimination of cryptic species of terrestrial mammals.

Comparative analysis of DNA homology in pericentric regions of chromosomes of wood mice from genera Apodemus and Sylvaemus

In the present study, an analysis of the DNA homology of the pericentric chromosomal regions and pericentric heterochromatin in distantly related species of wood mice (species from the Apodemus genus, as well as from the Apodemus and Sylvaemus genera) was conducted by fluorescent in situ hybridization (FISH) with microdissected DNA probes obtained from the corresponding chromosomal regions of these species. Cross-hybridization of microdissected DNA probes obtained from pericentric C-positive blocks of chromosomes of Sylvaemus species with chromosomes of Apodemus species, as well as DNA probes from pericentric C-positive blocks of chromosomes of Apodemus species with chromosomes of Apodemus and Sylvaemus species, showed that DNA repeats homologous to the pericentric regions in other species represented. dispersed repeats in C-negative chromosomal regions, as well as in several regions bordering pericentric C-positive and C-negative regions in heterochromosomes and autosomes and in distal regions in the long arms of several autosomes. The results indicate that the level of DNA homology in pericentric chromosomal regions decreases with an increase in the differentiation level and a decrease in the kinship between the compared forms and species of wood mice. Most likely, degeneration of the DNA repeats is accompanied by a gradual destruction of repeat clusters and their replacement by new, nonhomologous repeats in almost all pericentric regions (some old repetitive sequences might be "extruded" into interstitial or telomeric regions of chromosomes). These processes, which are observed in some species from Sylvaemus genus in distantly related species of Sylvaemus and Apodemus genera, have almost achieved the final stages.

Estimating the molecular evolutionary rates of mitochondrial genes referring to Quaternary ice age events with inferred population expansions and dispersals in Japanese Apodemus.

BackgroundDetermining reliable evolutionary rates of molecular markers is essential in illustrating historical episodes with phylogenetic inferences. Although emerging evidence has suggested a high evolutionary rate for intraspecific genetic variation, it is unclear how long such high evolutionary rates persist because a recent calibration point is rarely available. Other than using fossil evidence, it is possible to estimate evolutionary rates by relying on the well-established temporal framework of the Quaternary glacial cycles that would likely have promoted both rapid expansion events and interisland dispersal events.ResultsWe examined mitochondrial cytochrome b (Cytb) and control region (CR) gene sequences in two Japanese wood mouse species, Apodemus argenteus and A. speciosus, of temperate origin and found signs of rapid expansion in the population from Hokkaido, the northern island of Japan. Assuming that global warming after the last glacial period 7–10 thousand years before present (kyr BP) was associated with the expansion, the evolutionary rates (sites per million years, myr) of Cytb and CR were estimated as 11–16 % and 22–32 %, respectively, for A. argenteus, and 12–17 % and 17–24 %, respectively, for A. speciosus. Additionally, the significant signature of rapid expansion detected in the mtDNA sequences of A. speciosus from the remaining southern main islands, Honshu, Shikoku, and Kyushu, provided an estimated Cytb evolutionary rate of 3.1 %/site/myr under the assumption of a postglacial population expansion event long ago, most probably at 130 kyr BP. Bayesian analyses using the higher evolutionary rate of 11–17 %/site/myr for Cytb supported the recent demographic or divergence events associated with the Last Glacial Maximum. However, the slower evolutionary rate of 3.1 %/site/myr would be reasonable for several divergence events that were associated with glacial periods older than 130 kyr BP.ConclusionsThe faster and slower evolutionary rates of Cytb can account for divergences associated with the last and earlier glacial maxima, respectively, in the phylogenetic inference of murine rodents. The elevated evolutionary rate seemed to decline within 100,000 years.

Comparative FISH analysis of C-positive regions of chromosomes of wood mice (Rodentia, Muridae, Sylvaemus)

The homology of DNA of C-positive centromeric regions of chromosomes in wood mice of the genus Sylvaemus (S. uralensis, S. fulvipectus, S. sylvaticus, S. flavicollis, and S. ponticus) was estimated for the first time. DNA probes were generated by microdissection from the centromeric regions of individual autosomes of each species, and their fluorescence in situ hybridization (FISH) with metaphase chromosomes of representatives of all studied wood mouse species was carried out. Unlike in the chromosomal forms and races of S. uralensis, changes in the DNA composition of the chromosomal centromeric regions in the wood mouse species of the genus Sylvaemus (including closely related S. flavicollis and S. ponticus) are both quantitative and qualitative. The patterns of FISH signals after in situ hybridization of the microdissection DNA probes with chromosomes of the species involved in the study demonstrate significant differences between C-positive regions of wood mouse chromosomes in the copy number and the level of homology of repetitive sequences as well as in the localization of homologous repetitive sequences. It was shown that C-positive regions of wood mouse chromosomes can contain both homologous and distinct sets of repetitive sequences. Regions enriched with homologous repeats were detected either directly in C-positive regions of individual chromosomes or only on the short arms of acrocentrics, or at the boundary of C-positive and C-negative regions.

Applicability of artificial burrows to studies of natural populations of two species of wood mice, Apodemus speciosus and A. argenteus

Applicability of artificial burrows to studies of natural populations of two species of wood mice, Apodemus speciosus and A. argenteus

Deer-proof fence prevents regeneration of Picea jezoensis var. hondoensis through seed predation by increased woodmouse populations

The indirect consequence of sika deer (Cervus nippon) grazing on the regeneration of Picea jezoensis var. hondoensis through its effect on the small rodent population was assessed by evaluating seed predation by mice inside and outside the deer-proof fence on Mt Ohdaigahara, central Japan. Following construction of the deer-proof fence, Sasa nipponica, which covers the forest floor and is the main forage of deer, grew thicker inside the fence due to the absence of deer grazing than outside of the fence. Higher numbers of two species of woodmice (Apodemus speciosus and A. argenteus) were found inside the fence, possibly because the thick S. nipponica growth provides better cover. Inside the fence, more seeds of P. jezoensis var. hondoensis were eaten by the mice than outside the fence. These results suggest that the mouse populations inside the fence increased due to changes in S. nipponica cover, which subsequently increased seed predation by the mice, possibly preventing regeneration of P. jezoensis var. hondoensis.

Microhabitat use of wood mice ranging from a reserved belt with evergreen broad-leaved trees to a coniferous plantation

Wood mice Apodemus speciosus and Apodemus argenteus are potentially important seed dispersers and predators of Quercus and Castanopsis in Japan. We investigated the existence of two species of wood mice in warm-temperate forests ranging from a reserved belt of evergreen broad-leaved trees to a coniferous plantation, and analyzed the relationship between wood mouse occurrence and environmental factors to confirm their microhabitat use. We used two-way analysis of variance to analyze differences in the captured number of each wood mouse species in two trapping seasons as well as two stand types to confirm the interaction between the stand type and trapping season. Apodemus speciosus were often captured in the reserved belt, while captures of A. argenteus were independent of season and stand types. It is reasonable to conclude from the results of the trends in occurrence that the two species of wood mice showed different uses of the microhabitat. The result of linear discriminant analysis made it clear that the distance from the reserved belt had much to do with the difference in microhabitat use between the two species in the fruiting season of Quercus and Castanopsis. On average, A. speciosus moved 19.9m during nonfruiting and 61.3m during fruiting, while A. argenteus moved 8.1m during nonfruiting, and 29.0m during fruiting from analysis of the recapture position. The results indicate that both species of mice move around during the fruiting season more than in the nonfruiting season.

Skull shape in thegenus Apodemus: phylogenetic conservatism and/or adaptation to local conditions

We studied morphological variation among western Palaearctic species of woodmice (genusApodemus). Twenty one dental and skull variables were measured and evaluated using multivariate statistical approaches. A total of 501 specimens of the following 9 species of wood mice were examined:A. hermonensis, A. hyrcanicus, A. uralensis (=microps),A. flavicollis, A. sylvaticus, A. epimelas, A. mystacinus, A. peninsulae, A. agrarius. Species occupying large geographic areas were represented by two or three geographically distant populations. The analyses, based both on original and size adjusted data, revealed congruence between morphological evolution and phylogenetic relationships.

Molecular phylogeny and taxonomy of wood mice (genus Apodemus Kaup, 1829) based on complete mtDNA cytochrome b sequences, with emphasis on Chinese species

Phylogenetic relationships among 15 species of wood mice (genus Apodemus) were reconstructed to explore some long-standing taxonomic problems. The results provided support for the monophyly of the genus Apodemus, but could not reject the hypothesis of paraphyly for this genus. Our data divided the 15 species into four major groups: (1) the Sylvaemus group ( A. sylvaticus, A. flavicollis, A. alpicola, and A. uralensis), (2) the Apodemus group ( A. peninsulae, A. chevreri, A. agrarius, A. speciosus, A. draco, A. ilex, A. semotus, A. latronum, and A. mystacinus), (3) A. argenteus, and (4) A. gurkha. Our results also suggested that orestes should be a valid subspecies of A. draco rather than an independent species; in contrast, A. ilex from Yunnan may be regarded as a separate species rather than a synonym of orestes or draco. The species level status of A. latronum, tscherga as synonyms of A. uralensis, and A. chevrieri as a valid species and the closest sibling species of A. agrarius were further corroborated by our data. Applying a molecular clock with the divergences of Mus and Rattus set at 12 million years ago (Mya) as a calibration point, it was estimated that five old lineages ( A. mystacinus and four major groups above) diverged in the late Miocene (7.82–12.74 Mya). Then the Apodemus group (excluding A. mystacinus) split into two subgroups: agrarius and draco, at about 7.17–9.95 Mya. Four species of the Sylvaemus group were estimated to diverge at about 2.92–5.21 Mya. The Hengduan Mountains Region was hypothesized to have played important roles in Apodemus evolutionary histories since the Pleistocene.

Differential geographic patterns of mitochondrial DNA variation in two sympatric species of Japanese wood mice, Apodemus speciosus and A. argenteus.

We examined the gene sequences of mitochondrial cytochrome b (cyt b) in two Japanese wood mouse species, Apodemus speciosus (n = 89) and A. argenteus (n = 46), which are distributed on the four main islands of Japan (Hokkaido, Honshu, Shikoku, and Kyushu) and on the small islands surrounding them. Apodemus speciosus, the larger of the two species, showed substantial genetic variation, with a maximum of 3% sequence divergence, and remarkable phylogenetic subdivision with two major clades. One clade represents haplotypes from a central region, including Honshu, Shikoku, Kyushu, and their adjacent islands; the other clade includes haplotypes from Hokkaido and the peripheral islands, forming four subclades: a) Hokkaido, b) Sado Island, c) Satsunan Islands, and d) the Izu Islands. Sequence divergence among the four subclades was 1.0 to 1.5%, implying that A. speciosus colonized these geographic regions 0.2 to 0.3 million years ago, assuming a substitution rate of 2.4% per million years. The population on the Izu Islands has preserved haplotypes that are distinct from those in any other region, providing good evidence for the natural colonization of the volcanic islands of the Izu Islands. The cyt b sequence variation had no relation to the karyotypic dimorphism for the eastern (2n = 48) and western (2n = 46) geographic groups, between which a strict border exists at central Honshu. On the other hand, Apodemus argenteus, the smaller of the two species, showed a similar level of sequence divergence (maximum of 3%) but no substantial geographic differentiation: populations in Hokkaido, Sado, and Yakushima shared similar haplotypes with each of the central populations, suggesting that genetic exchanges occurred among the localities in the last 0.15 million years. The apparent genetic structure of the mitochondrial DNA found in the A. speciosus population might be caused solely by long-term existence in insular regions, presumably due to ecological superiority relative to A. argenteus.

Adaptive latitudinal trends in the mandible shape of Apodemus wood mice

AbstractAim Size and shape of the mandible are investigated across the latitudinal range of the European wood mouse (Apodemus sylvaticus), in order to address the relative importance of genetic structure, insularity, and geographical gradient in patterning morphological variation. Results are compared with those on two Asiatic species of wood mice, A. argenteus and A. speciosus.Location The European wood mouse is sampled by a set of trapping localities including both, islands and mainland populations, as well as the four genetic groups identified in previous studies. The localities cover a latitudinal gradient from 55° N to 36° N.Methods Different Fourier methods are applied to the outlines of mandibles and their results compared in the case of A. sylvaticus. All provide similar results and allow a quantification of the size and shape variations across the geographical range of the European wood mouse. Using the method allowing for the best reduction of the informative data set, a comparison of the European wood mouse with the two Asiatic species was performed.Results Within the European wood mouse A. sylvaticus, a strong latitudinal gradient in mandible shape overrides the influence of insularity and genetic structure. Yet, random morphological divergence in insular conditions can be identified as a secondary process of shape differentiation. Size displays no obvious pattern of variation, neither with insularity or latitude. A comparison with two other species of wood mice suggests that a similar latitudinal gradient in mandible shape exists in different species, mandibles being flatter in the north and wider in the south.Main conclusion The latitudinal gradient in mandible shape observed in the three species of wood mice is interpreted as an intraspecific adaptive response to gradual changes in feeding behaviour.

Karyotypic variation between wood mouse species: banded chromosomes of Apodemus alpicola and A. microps

Digital Repository of Scientific Institutes (RCIN) was established and is being developed mainly as an outcome of two projects acquired and jointly accomplished by a group of Polish scientific institutes.

Karyotypic variation between wood mouse species: banded chromosomes ofApodemus alpicola andA. microps

The banding pattern (G-, C-, AgNOR-staining) was described in karyotypes ofApodemus alpicola Heinrich, 1952 andA. microps Kratochvil et Rosicky, 1952 collected from the Alps and central Europe. Distinct differences between the two species were revealed in the distribution of C-heterochromatic regions in autosomes and the sex chromosomes, and the distribution of nucleolar organizer regions (NORs). Extensive variation in the distribution pattern of C-heterochromatin and NORs obviously exists among the wood mice of the subgenusSylvaemus, and individual species can be distinguished according to a specific variation pattern. However, it seems premature to designate individual karyotypic forms as separate species, because the extent of overall geographical interpopulation variation is still not sufficiently known.

Hoarding behaviors of two wood mouse species: Different preference for acorns of two Fagaceae species

Two species of wood mouse, Apodemus argenteus and A. speciosus, were observed consuming and hoarding acorns of Quercus serrata and Castanopsis cuspidata. When each species of acorn was supplied individually, both species of mice used each species of acorn for eating and hoarding. When both species of acorn were supplied, A. argenteus consumed or hoarded only C. cuspidata, whereas A. speciosus tended to eat C. cuspidata acorns at the feeding site, and disperse or hoard Q. serrata acorns. Apodemus speciosus is unlikely to disperse C. cuspidata acorns (their utilization was biased towards consumption) when Q. serrata acorns are also available. Apodemus argenteus will make almost no contribution to the dispersal of Q. serrata when the two acorn species coexist.