Vanadium-dependent Haloperoxidases Research Articles

Evolution of Complex Thallus Alga: Genome Sequencing of Saccharina japonica.

Saccharina, as one of the most important brown algae (Phaeophyceae) with multicellular thallus, has a very remarkable evolutionary history, and globally accounts for most of the economic marine aquaculture production worldwide. Here, we present the 580.5 million base pairs of genome sequence of Saccharina japonica, whose current assembly contains 35,725 protein-coding genes. In a comparative analysis with Ectocarpus siliculosus, the integrated virus sequence suggested the genome evolutionary footprints, which derived from their co-ancestry and experienced genomic arrangements. Furthermore, the gene expansion was found to be an important strategy for functional evolution, especially with regard to extracelluar components, stress-related genes, and vanadium-dependent haloperoxidases, and we proposed a hypothesis that gene duplication events were the main driving force for the evolution history from multicellular filamentous algae to thallus algae. The sequenced Saccharina genome paves the way for further molecular studies and is useful for genome-assisted breeding of S. japonica and other related algae species.

Synthesis, characterization and catalytic activity of dioxidouranium(VI) complexes of ONNO tetradentate Mannich bases

The reaction of dibasic tetradentate ONNO donor Mannich bases, derived from ethylenediamine and 2,4–di–tert–butylphenol (H2L1) (I), 2,4–di–methylphenol (H2L2) (II), 2–tert–butyl–4–methylphenol (H2L3) (III) and 2,4–di–chlorophenol (H2L4) (IV), with UVIO2(MeCOO)2·2H2O in a 1:1 M ratio in refluxing MeOH gave the corresponding mononuclear trans-dioxidouranium(VI) complexes of the type trans-[UVIO2L(MeOH)] (H2L = H2L1 to H2L4) (1–4). The synthesized complexes are stable in air, reddish-brown in color and soluble in most solvents. These complexes are characterized by elemental analysis, various spectroscopic (FT-IR, UV/Vis, 1H and 13C NMR) techniques and single-crystal X-ray analysis of 3 and 4. The complexes adopt distorted pentagonal bipyramidal geometry around the metal centre. The ligand acts as tetradentate, coordinating through two phenolato oxygen and two imino nitrogen atoms; two oxido groups are trans to each other. These complexes are used as catalysts to study the oxidative bromination of thymol and styrene. The catalytic oxidative bromination of thymol resulted in the formation of three products namely, 2-bromothymol, 4-bromothymol and 2,4-dibromothymol while oxidative bromination of styrene gave two products, 2-bromo-1-phenylethane-1-ol and 1-phenylethane-1,2-diol. In order to find out the optimized reaction conditions for the fixed concentration (10 mmol) of substrate, effects of different amounts of catalyst, KBr, HClO4, and oxidant (H2O2) have been investigated. Under the optimized reaction conditions, all the complexes have shown good catalytic potentials for the oxidative bromination of substrates, establishing the functional similarity to vanadium dependent haloperoxidases. Changes in the UV–visible absorption spectra of dioxidouranium(VI) complexes upon addition of H2O2 suggest the formation of the corresponding oxidoperoxidouranium(VI) complexes.

Total Enzyme Syntheses of Napyradiomycins A1 and B1.

The biosynthetic route to the napyradiomycin family of bacterial meroterpenoids has been fully described 32 years following their original isolation and 11 years after their gene cluster discovery. The antimicrobial and cytotoxic natural products napyradiomycins A1 and B1 are produced using three organic substrates (1,3,6,8-tetrahydroxynaphthalene, dimethylallyl pyrophosphate, and geranyl pyrophosphate), and catalysis via five enzymes: two aromatic prenyltransferases (NapT8 and T9); and three vanadium dependent haloperoxidase (VHPO) homologues (NapH1, H3, and H4). Building upon the previous characterization of NapH1, H3, and T8, we herein describe the initial (NapT9, H1) and final (NapH4) steps required for napyradiomycin construction. This remarkably streamlined biosynthesis highlights the utility of VHPO enzymology in complex natural product generation, as NapH4 efficiently performs a unique chloronium-induced terpenoid cyclization to establish two stereocenters and a new carbon-carbon bond, and dual-acting NapH1 catalyzes chlorination and etherification reactions at two distinct stages of the pathway. Moreover, we employed recombinant napyradiomycin biosynthetic enzymes to chemoenzymatically synthesize milligram quantities in one pot in 1 day. This method represents a viable enantioselective approach to produce complex halogenated metabolites, like napyradiomycin B1, that have yet to be chemically synthesized.

Ocean acidification increases iodine accumulation in kelp-based coastal food webs.

Kelp are main iodine accumulators in the ocean, and their growth and photosynthesis are likely to benefit from elevated seawater CO2 levels due to ocean acidification. However, there are currently no data on the effects of ocean acidification on iodine metabolism in kelp. As key primary producers in coastal ecosystems worldwide, any change in their iodine metabolism caused by climate change will potentially have important consequences for global geochemical cycles of iodine, including iodine levels of coastal food webs that underpin the nutrition of billions of humans around the world. Here, we found that elevated pCO2 enhanced growth and increased iodine accumulation not only in the model kelp Saccharina japonica using both short-term laboratory experiment and long-term in situ mesocosms, but also in several other edible and ecologically significant seaweeds using long-term in situ mesocosms. Transcriptomic and proteomic analysis of S.japonica revealed that most vanadium-dependent haloperoxidase genes involved in iodine efflux during oxidative stress are down-regulated under increasing pCO2 , suggesting that ocean acidification alleviates oxidative stress in kelp, which might contribute to their enhanced growth. When consumed by abalone (Haliotis discus), elevated iodine concentrations in S.japonica caused increased iodine accumulation in abalone, accompanied by reduced synthesis of thyroid hormones. Thus, our results suggest that kelp will benefit from ocean acidification by a reduction in environmental stress however; iodine levels, in kelp-based coastal food webs will increase, with potential impacts on biogeochemical cycles of iodine in coastal ecosystems.

Coordination environment changes of the vanadium in vanadium-dependent haloperoxidase enzymes

Vanadium-dependent haloperoxidases are a class of enzymes that catalyze oxidation reactions with halides to form halogenated organic products and water. These enzymes include chloroperoxidase and bromoperoxidase, which have very different protein sequences and sizes, but regardless the coordination environment of the active sites is surprisingly constant. In this manuscript, the comparison of the coordination chemistry of V-containing-haloperoxidases of the trigonal bipyramidal geometry was done by data mining. The catalytic cycle imposes changes in the coordination geometry of the vanadium to accommodate the peroxidovanadium(V) intermediate in an environment we describe as a distorted square pyramidal geometry. During the catalytic cycle, this intermediate converts to a trigonal bipyramidal intermediate before losing the halogen and forming a tetrahedral vanadium-protein intermediate. Importantly, the catalysis is facilitated by a proton-relay system supplied by the second sphere coordination environment and the changes in the coordination environment of the vanadium(V) making this process unique among protein catalyzed processes. The analysis of the coordination chemistry shows that the active site is very tightly regulated with only minor changes in the coordination geometry. The coordination geometry in the protein structures deviates from that found for both small molecules crystalized in the absence of protein and the reported functional small molecule model compounds. At this time there are no examples reported of a structurally similar small molecule with the geometry observed for the peroxidovanadium(V) in the active site of the vanadium-containing haloperoxidases.

Environmental Control of Vanadium Haloperoxidases and Halocarbon Emissions in Macroalgae.

Vanadium-dependent haloperoxidases (V-HPO), able to catalyze the reaction of halide ions (Cl-, Br-, I-) with hydrogen peroxide, have a great influence on the production of halocarbons, which in turn are involved in atmospheric ozone destruction and global warming. The production of these haloperoxidases in macroalgae is influenced by changes in the surrounding environment. The first reported vanadium bromoperoxidase was discovered 40years ago in the brown alga Ascophyllum nodosum. Since that discovery, more studies have been conducted on the structure and mechanism of the enzyme, mainly focused on three types of V-HPO, the chloro- and bromoperoxidases and, more recently, the iodoperoxidase. Since aspects of environmental regulation of haloperoxidases are less well known, the present paper will focus on reviewing the factors which influence the production of these enzymes in macroalgae, particularly their interactions with reactive oxygen species (ROS).

Characterization and Biochemical Assays of Streptomyces Vanadium-Dependent Chloroperoxidases.

Vanadium-dependent haloperoxidases (VHPOs) are fascinating enzymes that facilitate electrophilic halogen incorporation into electron-rich substrates, simply requiring vanadate, a halide source, and cosubstrate hydrogen peroxide for activity. Initially characterized in fungi and red algae, VHPOs were long believed to have limited regio-, chemo-, and enantioselectivity in the production of halogenated metabolites. However, the recent discovery of homologues in the biosynthetic gene clusters of the stereoselectively halogenated meroterpenoids from marine-derived Streptomyces bacteria has revised this paradigm. Their intriguing transformations have both enhanced and contributed to the fields of synthetic organic and natural product chemistry. We, herein, describe the expression, purification, and chemical assays of two characterized vanadium-dependent chloroperoxidase enzymes (NapH1 and Mcl24), and one homologue devoid of chlorination activity (NapH3), involved in the biosyntheses of halogenated meroterpenoid products.

Dioxidomolybdenum(VI) complexes bearing sterically constrained aroylazine ligands: Synthesis, structural investigation and catalytic evaluation

Seven new dioxidomolybdenum(VI) complexes [MoO2L1(X)].X (1) and [MoO2L2–7(X)] (2–7) [Where X=EtOH in case of 1 and 5 and X=DMSO in case of 2–4 and 6, 7] of aroylazines containing a bulky 3-hydroxy-2-naphthoic substituent, were isolated and structurally characterized. The aroylazine ligands H2L1–7 were derived from the condensation of 3-hydroxy-2-naphthoic acid hydrazide with several substituted aromatic aldehydes/ketones. All the synthesized ligands and metal complexes were successfully characterized by elemental analysis, IR, UV–Vis and NMR spectroscopy. X-ray structures of 1–6 revealed that the ligands coordinate to the metal center as a dibasic tridentate ligand. Cyclic voltammetry of the complexes shows two irreversible reductive responses within the potential window −0.50 to −1.36V, due to MoVI/MoV and MoV/MoIV processes. The synthesized complexes 1–7 were used as catalysts for the oxidation of benzoin, and for the oxidative bromination of salicylaldehyde, as a functional mimic of haloperoxidase. It was found that the percentage of conversion increased significantly in the presence of catalysts 1–7 which contained bulky substituents, and showed high percentage of conversion (>90%) with high turnover frequency (>1100h−1) than previously reported catalysts. Benzil, benzoic acid and benzaldehyde-dimethylacetal were formed selectively for the oxidation of benzoin. Formation of 5-bromosalicylaldehyde and 3,5-dibromosalicylaldehyde took place during the oxidative bromination of salicylaldehyde in presence of H2O2 asan oxidant and therefore 1–7 act as functional models of vanadium dependent haloperoxidases.

A unifying paradigm for naphthoquinone-based meroterpenoid (bio)synthesis.

Bacterial meroterpenoids constitute an important class of natural products with diverse biological properties and therapeutic potential. The biosynthetic logic for their production is unknown and defies explanation via classical biochemical paradigms. A large subgroup of naphthoquinone-based meroterpenoids exhibits a substitution pattern of the polyketide-derived aromatic core that seemingly contradicts the established reactivity pattern of polyketide phenol nucleophiles and terpene diphosphate electrophiles. We report the discovery of a hitherto unprecedented enzyme-promoted α-hydroxyketone rearrangement catalysed by vanadium-dependent haloperoxidases to account for these discrepancies in the merochlorin and napyradiomycin class of meroterpenoid antibiotics, and we demonstrate that the α-hydroxyketone rearrangement is potentially a conserved biosynthetic reaction in this molecular class. The biosynthetic α-hydroxyketone rearrangement was applied in a concise total synthesis of naphthomevalin, a prominent member of the napyradiomycin meroterpenes, and sheds further light on the mechanism of this unifying enzymatic transformation.

Characterization of a Cyanobacterial Haloperoxidase and Evaluation of its Biocatalytic Halogenation Potential.

Vanadium-dependent haloperoxidases (VHPOs) are a class of halogenating enzymes found in fungi, lichen, algae, and bacteria. We report the cloning, purification, and characterization of a functional VHPO from the cyanobacterium Acaryochloris marina (AmVHPO), including its structure determination by X-ray crystallography. Compared to other VHPOs, the AmVHPO features a unique set of disulfide bonds that stabilize the dodecameric assembly of the protein. Easy access by high-yield recombinant expression, as well as resistance towards organic solvents and temperature, together with a distinct halogenation reactivity, make this enzyme a promising starting point for the development of biocatalytic transformations.

Independent Evolution of Six Families of Halogenating Enzymes.

Halogenated natural products are widespread in the environment, and the halogen atoms are typically vital to their bioactivities. Thus far, six families of halogenating enzymes have been identified: cofactor-free haloperoxidases (HPO), vanadium-dependent haloperoxidases (V-HPO), heme iron-dependent haloperoxidases (HI-HPO), non-heme iron-dependent halogenases (NI-HG), flavin-dependent halogenases (F-HG), and S-adenosyl-L-methionine (SAM)-dependent halogenases (S-HG). However, these halogenating enzymes with similar biological functions but distinct structures might have evolved independently. Phylogenetic and structural analyses suggest that the HPO, V-HPO, HI-HPO, NI-HG, F-HG, and S-HG enzyme families may have evolutionary relationships to the α/β hydrolases, acid phosphatases, peroxidases, chemotaxis phosphatases, oxidoreductases, and SAM hydroxide adenosyltransferases, respectively. These halogenating enzymes have established sequence homology, structural conservation, and mechanistic features within each family. Understanding the distinct evolutionary history of these halogenating enzymes will provide further insights into the study of their catalytic mechanisms and halogenation specificity.

51V magic angle spinning NMR spectroscopy and quantum chemical calculations in vanadium bio-inorganic systems: current perspective

In recent years, 51V magic angle spinning (MAS) NMR spectroscopy has been widely used to characterize vanadium centers in biology, biomimetic complexes, and inorganic compounds of medicinal and industrial relevance. It has been demonstrated that 51V NMR parameters are sensitive probes of the coordination geometry and chemical environment of the metal center, beyond the first coordination sphere. To establish the relationships between NMR parameters and structure of the vanadium centers, over the past decade a large series of coordination complexes have been analyzed by MAS NMR spectroscopy. It has been demonstrated that the interpretation of the NMR parameters requires the use of theoretical methods, such as density functional (DFT) theory, whereby the experimental NMR observables are linked to the electronic and structural properties of a molecule. DFT calculations have been successfully employed to not only predict NMR parameters but to also yield valuable information regarding the structure and function of various vanadium compounds. In this report, we review the current state of the field, and present a survey of bioinorganic vanadium complexes as well as vanadium-dependent haloperoxidases analyzed using 51V MAS NMR spectroscopy and DFT calculations, to illustrate the rich information content available from such a combined approach.

Hydrogen peroxide content and vanadium-dependent haloperoxidase activity in thalli of six species of Fucales (Phaeophyceae)

:Patterns of hydrogen peroxide content and vanadium-dependent haloperoxidase (V-HPO) activity were investigated in thalli of six species of Fucales (Fucus vesiculosus, F. serratus, F. edentatus, F. distichus, Ascophyllum nodosum and Pelvetia canaliculata). H2O2 levels in all species were similar to those of photosynthesizing tissues of unstressed terrestrial plants. The highest H2O2 content (up to 0.7 μM g FW−1) was in F. distichus and Pelvetia. H2O2 content in the basal and middle zones of fronds was generally higher than in vegetative apices and receptacles. Similar trends were detected for V-HPO activity with both bromide and iodide. Intrathallus profiles of H2O2 content and V-HPO activity may be attributed to the physiological condition of the respective thallus zones, i.e. photosynthetic activity and stage of cell differentiation. Steady-state kinetics showed significant variation of V-HPO parameters between fucoid species, suggesting that they contain different forms of the enzyme. V-HPO from high-intertidal Pelvetia and F. distichus exhibited the highest Km values for both halide and H2O2. The enzyme form with the maximum kinetic efficiency occurred in the mid-intertidal fucoids. For all investigated species, the iodination activities were two to four times lower than for bromination. Apparently, V-HPOs contribute significantly to the control of reactive oxygen species accumulation in Fucales. The similarity of the longitudinal profiles of H2O2 content and peroxidase activity between Fucales and terrestrial plants suggests a physiological analogy of V-HPO and secretory peroxidases.

Gene screening and metabolomics for identification of halogenated natural products from marine sponge-associated bacteria

Marine sponges and their associated microbes are promising sources of halogenated bioactive natural products. In many cases the halogen moiety is required for biological activity. Halogenation reactions are commonly catalyzed by flavin-dependent halogenases and vanadium-dependent haloperoxidases. This research addresses how to identify biosynthetically promising bacteria and how to access halogenated metabolites encoded in their genomes. A bacterial library consisting of 980 isolates was established from four Caribbean sponge species. A combinatorial approach utilizing genetic screening and an HRMS-based metabolomics workflow was developed to identify strains capable of producing halogenated metabolites. Small-subunit rDNA sequencing identified 25 OTUs using a similarity cutoff of 99%. Twelve strains represented putatively novel species based on 16S rDNA gene sequences exhibiting show ≤97% identity to known organisms. PCR screening identified 39 strains possessing the potential biosynthetic machinery necessary to produce halogenated metabolites. However, only a few putative halogenated metabolites were detected in a metabolomic analysis of 900 strains cultured under a single fermentation condition. This suggests that gene clusters encoding halogenated metabolites are cryptic in these strains. Investigation of enzyme diversity as well as induction efforts to elicit production of halogenated metabolites for strains positive in the PCR screen will be presented.

Oxidative bromination of monoterpene (thymol) using dioxidomolybdenum(VI) complexes of hydrazones of 8-formyl-7-hydroxy-4-methylcoumarin

Condensation of equimolar amount of 8-formyl-7-hydroxy-4-methylcoumarin (fhmc) and hydrazides [benzoylhydrazide (bhz), isonicotinoylhydrazide (inh), nicotinoylhydrazide (nah) and furoylhydrazide (fah)] in methanol results in the formation of potential ONO tridentate ligands H2fhmc-bhz (I), H2fhmc-inh (II), H2fhmc-nah (III), and H2fhmc-fah (IV), respectively. Reaction of these ligands with [MoVIO2(acac)2] in refluxing methanol gives dioxidomolybdenum(VI) complexes, [MoVIO2(fhmc-bhz)(MeOH)] (1), [MoVIO2(fhmc-inh)(MeOH)] (2), [MoVIO2(fhmc-nah)(MeOH)] (3) and [MoVIO2(fhmc-fah)(MeOH)] (4), respectively. The structures of the obtained ligand and their respective metal complexes were elucidated by elemental analyses, spectroscopic techniques (IR, electronic, 1H and 13C NMR) and thermogravimetric analyses. Single crystal X-ray analysis of complex 1a confirms the chelation of the ligand to the metal ion through two oxygen and a nitrogen atoms. These metal complexes have been tested against oxidative bromination of monoterpene (thymol) to yield 2-bromothymol, 4-bromothymol and 2,4-dibromothymol using H2O2 as an oxidant therefore they act as functional models of vanadium dependent haloperoxidases. The effects of various factors, such as amounts of catalyst, oxidant, KBr, HClO4 and different solvents have been considered to optimize the reaction conditions for the maximum brominated products.

⁵¹V NMR Crystallography of Vanadium Chloroperoxidase and Its Directed Evolution P395D/L241V/T343A Mutant: Protonation Environments of the Active Site.

Vanadium-dependent haloperoxidases (VHPOs) perform two-electron oxidation of halides using hydrogen peroxide. Their mechanism, including the factors determining the substrate specificity and the pH-dependence of the catalytic rates, is poorly understood. The vanadate cofactor in the active site of VHPOs contains "spectroscopically silent" V(V), which does not change oxidation state during the reaction. We employed an NMR crystallography approach based on (51)V magic angle spinning NMR spectroscopy and Density Functional Theory, to gain insights into the structure and coordination environment of the cofactor in the resting state of vanadium-dependent chloroperoxidases (VCPO). The cofactor environments in the wild-type VCPO and its P395D/L241V/T343A mutant exhibiting 5-100-fold improved catalytic activity are examined at various pH values. Optimal sensitivity attained due to the fast MAS probe technologies enabled the assignment of the location and number of protons on the vanadate as a function of pH. The vanadate cofactor changes its protonation from quadruply protonated at pH 6.3 to triply protonated at pH 7.3 to doubly protonated at pH 8.3. In contrast, in the mutant, the vanadate protonation is the same at pH 5.0 and 8.3, and the cofactor is doubly protonated. This methodology to identify the distinct protonation environments of the cofactor, which are also pH-dependent, could help explain the different reactivities of the wild-type and mutant VCPO and their pH-dependence. This study demonstrates that (51)V-based NMR crystallography can be used to derive the detailed coordination environments of vanadium centers in large biological molecules.

Enzymatic Halogenases and Haloperoxidases: Computational Studies on Mechanism and Function.

Despite the fact that halogenated compounds are rare in biology, a number of organisms have developed processes to utilize halogens and in recent years, a string of enzymes have been identified that selectively insert halogen atoms into, for instance, a CH aliphatic bond. Thus, a number of natural products, including antibiotics, contain halogenated functional groups. This unusual process has great relevance to the chemical industry for stereoselective and regiospecific synthesis of haloalkanes. Currently, however, industry utilizes few applications of biological haloperoxidases and halogenases, but efforts are being worked on to understand their catalytic mechanism, so that their catalytic function can be upscaled. In this review, we summarize experimental and computational studies on the catalytic mechanism of a range of haloperoxidases and halogenases with structurally very different catalytic features and cofactors. This chapter gives an overview of heme-dependent haloperoxidases, nonheme vanadium-dependent haloperoxidases, and flavin adenine dinucleotide-dependent haloperoxidases. In addition, we discuss the S-adenosyl-l-methionine fluoridase and nonheme iron/α-ketoglutarate-dependent halogenases. In particular, computational efforts have been applied extensively for several of these haloperoxidases and halogenases and have given insight into the essential structural features that enable these enzymes to perform the unusual halogen atom transfer to substrates.

One-pot enzymatic synthesis of merochlorin A and B.

The polycycles merochlorin A and B are complex halogenated meroterpenoid natural products with significant antibacterial activities and are produced by the marine bacterium Streptomyces sp. strain CNH-189. Heterologously produced enzymes and chemical synthesis are employed herein to fully reconstitute the merochlorin biosynthesis in vitro. The interplay of a dedicated type III polyketide synthase, a prenyl diphosphate synthase, and an aromatic prenyltransferase allow formation of a highly unusual aromatic polyketide-terpene hybrid intermediate which features an unprecedented branched sesquiterpene moiety from isosesquilavandulyl diphosphate. As supported by in vivo experiments, this precursor is furthermore chlorinated and cyclized to merochlorin A and isomeric merochlorin B by a single vanadium-dependent haloperoxidase, thus completing the remarkably efficient pathway.

ChemInform Abstract: Coordination Chemistry of Non‐Oxido, Oxido and Dioxidovanadium(IV/V) Complexes with Azine Fragment Ligands

AbstractReview: 205 refs.

Dinuclear vanadium complexes with rigid phenylpolycarboxylate ligands: synthesis, structure, and catalytic bromination reaction with potential detection of hydrogen peroxide

Vanadium complexes (VO)2(2,2′-bipy)2(bta)(H2O)2 (1) and (VO)2(1,10-phen)2(bta)(H2O)2 (2) (H4bta = 1,2,4,5-benzenetetracarboxylic acid, 2,2′-bipy = 2,2-bipyridine and 1,10-phen = 1,10-phenanthroline) have been synthesized by the reaction of V2(SO4)3, H4bta, 2,2′-bipy (for 1) and 1,10-phen (for 2) by hydrothermal methods. The complexes were characterized by elemental analysis, IR, UV–vis, thermogravimetric analyses, and single-crystal X-ray diffraction. Structural analyses indicate that 1 and 2 are both VO-bta-N-heterocycle system complexes. The central vanadium is coordinated by N2O4 donors to form a distorted octahedral geometry. The complexes exhibit catalytic bromination activity in a single-pot reaction with conversion of phenol red to bromophenol blue in a mixed solution of H2O-DMF at 30 ± 0.5 °C with pH 5.8, indicating that they can be considered as a functional model of vanadium-dependent haloperoxidases. The practical application of H2O2 detection has also been studied.