Urban Estuary Research Articles

Application of a New Shore-Based Vessel Traffic Monitoring System Within San Francisco Bay

Vessel traffic management systems can be employed for environmental management where vessel activity may be of concern. One such location is in San Francisco Bay where a variety of vessel types transit a highly-developed urban estuary. We analyzed vessel presence and speed across space and time using vessel data from the Marine Monitor, a vessel tracking system that integrates data from the Automatic Identification System and a marine-radar sensor linked to a high-definition camera. In doing so, we provide data that can inform collision risk to cetaceans who show an increased presence in the Bay and evaluation of the value in incorporating data from multiple sources when observing vessel traffic. We found that ferries traveled the greatest distance of any vessel type. Ferries and other commercial vessels (e.g., cargo and tanker ships and tug boats) traveled consistently in distinct paths while recreational traffic (e.g., motorized recreational craft and sailing vessels) was more dispersed. Large shipping vessels often traveled at speeds greater than 10 kn when transiting the study area, and ferries traveled at speeds greater than 30 kn. We found that distance traveled and speed varied by season for tugs, motorized recreational and sailing vessels. Distance traveled varied across day and night for cargo ships, tugs, and ferries while speed varied between day and night only for ferries. Between weekdays and weekends, distance traveled varied for cargo ships, ferries, and sailing vessels, while speed varied for ferries, motorized recreational craft, and sailing vessels. Radar-detected vessel traffic accounted for 33.9% of the total track distance observed, highlighting the need to include data from multiple vessel tracking systems to fully assess and manage vessel traffic in a densely populated urban estuary.

Accumulation and partitioning of metals and metalloids in the halophytic saltmarsh grass, saltwater couch, Sporobolus virginicus

Remnant endangered saltmarsh communities in Australia often occur in urbanised estuaries where industrial processes have contaminated sediments with metal(loid)s. Despite this issue, virtually nothing is known on local plant species exposure to metal contaminants, nor their ability to uptake and translocate metal(loid)s from contaminated estuarine sediment. In the current study, we assessed the accumulation and partitioning of the metal(loid)s Zn, Cu, Pb, Cd and Se in the dominant saltmarsh primary producer, Sporobolus virginicus, across three urbanised estuaries in NSW Australia. Lake Macquarie was the most contaminated estuary, while Sydney Olympic Park, Port Jackson exhibited intermediate metal(loid) loadings and Hunter Wetlands exhibited the lowest loadings among estuaries. Essential metals (Zn and Cu) were more mobile, with sediment:root bioconcentration factors (BCFs) greater than unity and translocation among plant organs greater than, or equal to, unity. Other metal(loid)s were less mobile, with BCFs equal to unity and translocation factors among organs much reduced. Despite these barriers to translocation, all metal(loid)s were accumulated to roots with dose, and further accumulative relationships between metal(loid)s in roots and culms, and culms and leaves, were evidenced (with the exception of Cu). Along with sediment metal(loid)s, increases in sediment pH predicted Cu uptake in roots and increases in soil organic matter predicted Se uptake in roots. Although significant positive linear relationships were observed between sediment metal(loid)s and plant organ metal(loid)s(withholding Cu), the variance explained was low to intermediate for most metal(loid)s suggesting employing S. virginicus as an accumulative bioindicator would be impractical.

Suspect and Nontarget Screening for Contaminants of Emerging Concern in an Urban Estuary.

This study used suspect and nontarget screening with high-resolution mass spectrometry to characterize the occurrence of contaminants of emerging concern (CECs) in the nearshore marine environment of Puget Sound (WA). In total, 87 non-polymeric CECs were identified; those confirmed with reference standards (45) included pharmaceuticals, herbicides, vehicle-related compounds, plasticizers, and flame retardants. Eight polyfluoroalkyl substances were detected; perfluorooctanesulfonic acid (PFOS) concentrations were as high as 72-140 ng/L at one location. Low levels of methamphetamine were detected in 41% of the samples. Transformation products of pesticides were tentatively identified, including two novel transformation products of tebuthiuron. While a hydrodynamic simulation, analytical results, and dilution calculations demonstrated the prevalence of wastewater effluent to nearshore marine environments, the identity and abundance of selected CECs revealed the additional contributions from stormwater and localized urban and industrial sources. For the confirmed CECs, risk quotients were calculated based on concentrations and predicted toxicities, and eight CECs had risk quotients >1. Dilution in the marine estuarine environment lowered the risks of most wastewater-derived CECs, but dilution alone is insufficient to mitigate risks of localized inputs. These findings highlighted the necessity of suspect and nontarget screening and revealed the importance of localized contamination sources in urban marine environments.

Low redundancy and complementarity shape ecosystem functioning in a low-diversity ecosystem.

Ecosystem functioning is positively linked to biodiversity on land and in the sea. In high-diversity systems (e.g. coral reefs), species coexist by sharing resources and providing similar functions at different temporal or spatial scales. How species combine to deliver the ecological function they provide is pivotal for maintaining the structure, functioning and resilience of some ecosystems, but the significance of this is rarely examined in low-diversity systems such as estuaries. We tested whether an ecological function is shaped by biodiversity in a low-diversity ecosystem by measuring the consumption of carrion by estuarine scavengers. Carrion (e.g. decaying animal flesh) is opportunistically fed on by a large number of species across numerous ecosystems. Estuaries were chosen as the model system because carrion consumption is a pivotal ecological function in coastal seascapes, and estuaries are thought to support diverse scavenger assemblages, which are modified by changes in water quality and the urbanization of estuarine shorelines. We used baited underwater video arrays to record scavengers and measure the rate at which carrion was consumed by fish in 39 estuaries across 1,000km of coastline in eastern Australia. Carrion consumption was positively correlated with the abundance of only one species, yellowfin bream Acanthopagrus australis, which consumed 58% of all deployed carrion. The consumption of carrion by yellowfin bream was greatest in urban estuaries with moderately hardened shorelines (20%-60%) and relatively large subtidal rock bars (>0.1km2 ). Our findings demonstrate that an ecological function can be maintained across estuarine seascapes despite both limited redundancy (i.e. dominated by one species) and complementarity (i.e. there is no spatial context where the function is delivered significantly when yellowfin bream are not present) in the functional traits of animal assemblages. The continued functioning of estuaries, and other low-diversity ecosystems, might therefore not be tightly linked to biodiversity, and we suggest that the preservation of functionally dominant species that maintain functions in these systems could help to improve conservation outcomes for coastal seascapes.

Linking contaminant distribution to hydrodynamic patterns in an urban estuary: The Douro estuary test case

An increase in anthropogenic activities in coastal regions can put at risk their flora and fauna and their ecosystem services. Therefore, it is important to evaluate possible impacts. In particular, we need to understand the links between contaminants concentrations and the hydrodynamic patterns of these highly productive regions to anticipate the effects of contaminants in the environment. Towards that aim there is the need to carry out regular campaigns to monitor the evolution of the coastal systems. In this work we analyse in-situ measurements of physico-chemical parameters, and look for possible relations between observed contaminants patterns and estuarine hydrodynamics. Data collected in the Douro estuary, one of the main estuarine regions of the Iberian western coast, revealed the presence of 5 hazardous and noxious substances (HNS), 14 polycyclic aromatic hydrocarbons (PAHs) and 6 trace metals in water and sediment samples. Water temperature and salinity analysis revealed a strong variability, which can affect the water solubility properties and the organisms' tolerance to certain toxins. A relationship between the salinity and the HNS and PAHs concentrations was found, caused by the existence of a salt-wedge that triggers the salting-out effect. Sinker contaminants (PAHs and trace metals) can be re-suspended both during low and high flow conditions associated with the salt-wedge and with strong river flows. Floater contaminants (HNS) are completely depended on the tide, which has the capacity to distribute them through the entire estuary, during low river flow regimes. However, strong river flows, with associated river plumes, can distribute both sinker and floater contaminants to the coastal region trapping them over the inner-shelf.The results clearly show that hydrodynamic patterns are a major driver for contaminants dispersion and pathways in coastal areas, inducing harmful effects to the flora and fauna and, consequently, to the ecosystem services of these regions.

Tidally resolved observations of organic carbon exchange through Eastern Long Island Sound

Long Island Sound (LIS), is an urban estuary on the US east coast that undergoes seasonal hypoxia in its western and central regions. Approximately 90% of the water exchange between LIS and the adjacent continental shelf, the Mid Atlantic Bight, occurs through its eastern boundary. Recent estimates of organic carbon (OC) export from LIS have shown that this value varies appreciably, both seasonally and inter-annually. In this study, the spatial, tidal, and seasonal variability were resolved by measuring dissolved and particulate organic carbon (DOC and POC) concentrations and currents at a cross-section in eastern LIS near the estuary mouth. Fluxes were extrapolated from these high-resolution observations collected in May, August, and November 2016, and August 2017. In August of 2016 (a low flow year), an OC flux of 41 × 106 kg C month−1 resulted from a net import of DOC and an export of POC. In August of 2017 (an average flow year), there was an OC flux of 30 × 106 kg C month −1 due to both DOC and POC export, indicating significant seasonal and inter-annual variability. The seasonally weighted-average total OC flux for 2016 was −41 × 106 ± 9 kg C yr−1 (net import). Results show that spot sampling in tidal estuaries can lead to spatial and tidal bias in concentrations of DOC (6–15%) and POC (31–18%) under high and low river flow conditions, respectively. This uncertainty is recommended for spot sampling in future OC studies and flux estimates in LIS.

Low concentrations and low spatial variability of marine microplastics in oysters (Crassostrea virginica) in a rural Georgia estuary.

Microplastics are an emerging concern for the health of marine ecosystems. In the southeastern US, the filter-feeding Eastern oyster, Crassostrea virginica, is susceptible to microplastic ingestion. We quantified the distribution of microplastics within adult oysters (harvestable size >7.5 cm) from 28 reefs throughout a rural estuary with limited riverine inputs (St. Catherines Sound, Georgia). To determine which variables best predict microplastic concentration in oysters, we also quantified oyster recruitment, distance to ocean, fetch, and water body width. Oysters averaged 0.72 microplastic particles per individual (0.18 particles per gram wet mass); microfragments and microplastics were equally abundant. Although microplastic concentrations were low, multivariate models identified a positive effect of water body width on the site-level concentration of plastic microfibers; average microfragment length was affected by fetch. Our work informs a growing understanding of microplastic distribution in coastal estuaries, providing an important rural contrast to the urbanized estuaries that have been examined.

Submarine groundwater discharge and associated nutrient and carbon inputs into Sydney Harbour (Australia)

The effects of urbanization and scales on submarine groundwater discharge (SGD) remain poorly understood. Here, we used radium isotopes to quantify SGD-derived fluxes of nitrogen, phosphorus and dissolved organic carbon (DOC) into Sydney Harbour estuary, Australia. Sydney is the most populated city of Oceania, with several localised cases of historical groundwater pollution. We sampled top and bottom waters at the harbour scale (~20 km) and also at four small scale embayments (~2 km). A decreasing gradient in radium isotope concentrations from upstream to downstream was observed. Mass balances constructed with 224Ra, 223Ra, and 226Ra revealed that total SGD ranged from 42 to 121 × 104 m3 d−1 depending on assumptions and isotope. These fluxes were related mostly to saline SGD (recirculated seawater), and are equivalent to >60 times the mean annual freshwater river discharge into Sydney Harbour (0.68 × 104 m3 d−1). The estimated SGD rates (2.2 ± 1.5 cm d−1) were comparable to the global average radium-derived-SGD in other urban estuaries (~3.1 cm d−1). No obvious relationships were observed between SGD and scale in Sydney Harbour. However, higher SGD rates estimated for embayments closer to the ocean indicate that a combination of waves, tides and urbanization control SGD. SGD derived fluxes exceeded maximum riverine nutrient fluxes by a factor of 2 for DOC, 6 for PO43−, 40 for NH4+ and 1.3 for NOX. Previous work has suggested that nutrients enter Sydney Harbour primarily through rivers or stormwater following episodic rain events. Our results imply that diffuse saline SGD can also be an important but overlooked source of nutrients, potentially sustaining primary productivity in times of no river flow.

Potential of heavy metal contamination in cultivated red seaweed (Gracilaria sp. and Eucheuma cottonii) from coastal area of Java, Indonesia

Heavy metal is one of the widespread environmental contaminants in Indonesian coastal waters. These heavy metals have a potential negative impact on the aquatic organism and the people who consumed it. Most seaweed cultivation in Indonesia is located in urbanized estuaries, cultivated seaweed can accumulate contaminants such as heavy metals. This study focuses on the analysis of heavy metals such as lead (Pb) and cadmium (Cd) in Gracilaria sp. and Eucheuma cottonii from various cultivation areas in Java, Indonesia. The purpose of this study is to find out whether seaweed can pose a potential risk to consumers and know the source of heavy metal contamination. The Atomic Absorption Spectrometry (AAS) method was used to determine the heavy metal level in seaweed. These results indicate generally that heavy metal contents of seaweeds cultivated urbanized estuaries should be monitored since accumulation appears to be site-dependent. Seaweed that cultivated in locations around the industry with poor waste management has an impact on higher levels of heavy metal.

Combining hydrological investigations and radium isotopes to understand the environmental effect of groundwater discharge to a typical urbanized estuary in China

Pollution of urbanized rivers with excess nutrients due to groundwater discharge is an increasing environmental concern worldwide. Dan'ao river, a typical urbanized river in the Guangdong-Hong Kong-Macao Greater Bay Area, is experiencing heavy water pollution. However, the groundwater-derived nutrient loads had not yet been thoroughly quantified. In order to quantify the contribution of groundwater-derived nutrient inputs, we combined the methods of hydrological investigations and radium isotopes. Groundwater and river water samples were collected from the river upstream to the estuary for the analyses of radium quartets and nutrients including DIN, DIP and DSi. The results showed that the radium activities in both surface water and groundwater decreased from the estuary to the upstream. The groundwater discharge rate was estimated by the radium mass balance model using short-lived radium isotopes (223Ra and 224Ra). The estimated groundwater discharge rate ranged from 1.99 × 105 to 6.67 × 105 m3 d−1, comparable to the upstream river discharge rate of 4.23 × 105 m3 d−1. The groundwater-derived nutrient fluxes were 165.66–554.98 mmol m−2 d−1 for DIN, 2.47–8.26 mmol m−2 d−1 for DIP and 63.73–213.49 mmol m−2 d−1 for DSi, respectively. They contributed 19%~44% DIN, 16%~39% DIP, and 31%~60% DSi of all the nutrient inputs into the Dan'ao River, respectively. In addition, the nutrient inputs by groundwater discharge has an average DIN:DIP ratio of as high as 190, which is able to potentially affect the riverine and marine nutrient structures. These findings may provide useful information for designing control strategies for reducing massive nutrient inputs to Dan'ao River in the future.

Salmonella from a Microtidal Estuary Are Capable of Invading Human Intestinal Cell Lines.

Faecal contamination poses health risks for the recreational users of urban estuaries. However, our understanding of the potential pathogenicity of faecal microbes in these environments is limited. To this end, a study was conducted to understand the spatial and seasonal distribution of Salmonella in water and sediments of the Yarra River estuary, Melbourne, Australia. Among 210 samples in total, culturable Salmonella were recovered from 27%, 17%, and 19% of water, bank, and bed sediment samples, respectively. The combined detection increased from 15% in winter to 32% in summer (p < 0.05) indicating seasonal variation as potential part of public health risk assessments. Further, pathogenic potential of the Salmonella isolates was characterised via the quantification of attachment and invasion capacity using human epithelial colorectal cell line Caco-2 on a subset of isolates (n = 62). While all of these isolates could attach and invade Caco-2 cells, 52% and 13% of these showed greater attachment and invasiveness, respectively, than the corresponding mean values for S. Typhimurium ATCC14028 control. Isolates from winter were on average more invasive (seven out of eight isolates with the highest invasiveness recovered from the colder sampling period) than the isolates from summer, and Salmonella collected during summer showed lower invasion (p < 0.05) compared with the control. Similar low invasion compared with the same control was observed for isolates recovered from bank sediment (p < 0.05). While the higher prevalence in summer may imply higher risks during these peak recreational periods, it is essential that this information is used in combination with quantitative microbial risk assessments to fully understand the health risks posed by Salmonella in microtidal estuaries.

Effect of neap-spring hydrodynamics on salt and suspended sediment transport in multi-branched urban estuaries

Unique neap and spring tide hydrodynamic features were studied in the estuarine areas of multi-branched urban rivers in Tokyo, Japan. Intensive measurements of salinity, turbidity, dissolved oxygen, velocity, particulate organic matter (POM), and nutrients were conducted for 13h in five stations simultaneously on July 3 and July 11, 2017. Water sampling, analysis and calculations of salt and sediment transport were performed. Results showed that the Arakawa and Sumida Rivers follow the typical natural estuary hydrodynamics while Shakujii River followed a typical artificial urban estuary. Shakujii River upstream estuary had lower flow velocity during spring tide (−0.05 to 0.04m/s) than neap tide (−0.09 to 0.16m/s) because of the channel slope that does not allow the transit of water to upstream even during high tide. Shakujii River downstream estuary had hypoxic (DO<2mg/L) bottom depths during neap and spring tide. Sumida River and Shakujii River are adjacent yet the nutrient and POM had different nature. Shakujii River is highly influenced by freshwater from combined sewer systems carrying POM, nutrients and sediments. The freshwater was 54% (14,650m3) and 100% (28,671.1m3) by volume during neap and spring tide, respectively. The POM and nutrients in Sumida River is influenced by tidal processes and tributary rivers. SS was transported from Sumida to Shakujii River during flood phase of spring tide. Freshwater from Arakawa River flows to Sumida River during ebb tide. Salt (−0.066kg/m/s) and SS (−0.16 to −2.435kg/m/s) were retained in the estuaries which may lead to river deterioration and occurrence of scum, hypoxia and odor. The results of the study, particularly on Shakujii River, are significant and could serve as basis for water quality management in similar urban estuaries.

Using metabolomics to assess the sub-lethal effects of zinc and boscalid on an estuarine polychaete worm over time.

Zinc is a heavy metal commonly detected in urban estuaries around Australia. Boscalid is a fungicide found in estuaries, both in water and sediment, it enters the system predominantly through agricultural run-off. Zinc is persistent while boscalid breaks down, with a half-life of 108days. Both contaminants are widely distributed and their effects on ecosystems are not well understood. The aim of this study was to determine the metabolite changes in Simplisetia aequisetis (an estuarine polychaete) following laboratory exposure to a sub-lethal concentration of zinc or boscalid over a 2-week period. Individuals were collected at six time points over a 2-week period. Whole polychaete metabolites were extracted and quantified using a multi-platform approach. Polar metabolites were detected using a semi-targeted GC-MS analysis and amine containing compounds were analysed using a targeted LC-MS analysis. Total lipid energy content was also analysed for Simplisetia aequisetis. The pathways that responded to zinc and boscalid exposure were alanine, aspartate and glutamate metabolism (AAG); glycine, serine and threonine metabolism (GST) and metabolites associated with the tricarboxylic acid cycle (TCA). Results showed that changes in total abundance of some metabolites could be detected as early as 24-h exposure. Changes were detected in the metabolites before commonly used total lipid energy assays identified effects. A multi-platform approach provided a holistic overview of the metabolomic response to contaminants in polychaetes. This approach shows promise to be used in biomonitoring programs to provide early diagnostic indicators of contamination and exposure.

The Fish Community Index: A Practical Management Tool for Monitoring and Reporting Estuarine Ecological Condition.

Indicators of ecological health based on biological communities, including numerous multimetric indices, are used worldwide to assess and report the condition of aquatic ecosystems such as estuaries. Yet, these tools have rarely been applied to support estuary management in Australia. We present a case study of one such multimetric indicator, the Fish Community Index (FCI), which was developed and applied to quantify the ecological condition of estuaries in southwestern Australia (SWA). We outline the rationale, development, and implementation of the FCI for annual monitoring and reporting of the ecological condition of a highly urbanized estuary, highlighting the key research and management outcomes that it has delivered, and evaluating its potential future applications to support estuary management more broadly, both across Australia and internationally. The FCI is founded upon a conceptually simple and scientifically robust rationale and is sensitive to the ecological stressors that affect many estuaries across the region (e.g., hypoxia, algal blooms). Together with an accompanying annual fish monitoring regime, the FCI provides managers with a consistent, robust basis for quantifying and reporting spatiotemporal changes in estuary condition, with easily comprehensible outputs that facilitate communication with stakeholders, ranging from politicians to the general public. We attribute the successful implementation of this management tool to several characteristics, namely 1) support from a long-term, collaborative partnership between managers and researchers; 2) comprehensive testing and validation of the index prior to implementation; 3) a robust, standardized monitoring regime; and 4) sustained resourcing from managers to implement the index as part of a reporting framework. The FCI has also been applied to other SWA estuaries and could provide a platform for more coordinated assessment and reporting of estuarine condition at the bioregional scale, thereby helping to improve the gap in reporting on the biotic integrity of Australian estuaries. Integr Environ Assess Manag 2019;15:726-738. © 2019 SETAC.

Phytoplankton responses to adaptive management interventions in eutrophic urban estuaries

Upstream anthropogenic perturbations can dramatically affect estuarine water quality, especially in small systems where water retention times are high. Management of these modified ecosystems often requires direct interventions to prevent detrimental long-term effects. The heavily urbanized and temporarily closed Zandvlei Estuary in South Africa has a long history of anthropogenic manipulation, and therefore acts as an ideal case-study to gauge reactive management practices. Continued deterioration of estuarine water quality and ecological functioning prompted the adoption of an adaptive management approach. Subsequent management interventions to increase salinity variability and nutrient removal included the (1) adoption of a mouth management plan, (2) regular harvesting of submerged vegetation, and (3) removal of flow obstructions. Physico-chemical and nutrient monitoring data (2010–2018) were assessed to document the response of phytoplankton to these interventions. Time-series analysis indicated an upward trend in salinity throughout the estuary. This corresponded with a temporal decline in phytoplankton biomass levels and was supported by model results that highlighted a strongly inverse relationship with salinity. The frequency of high-biomass events (>80 μg Chl-a l−1) also declined in each of the designated estuarine zones. In April 2012, an extensive harmful algal bloom (HAB) of Prymnesium parvum (Prymnesiophyceae) was recorded (~530 μg Chl-a l−1) in the estuary, culminating in hypoxic conditions (O2 < 2 mg l−1) and fish kills. However, the subsequent mechanical breaching of the mouth has prevented reoccurrences of P. parvum. Similarly, more saline conditions arising from increased marine connectivity reduced the abundance of the previously dominant Bacillariophyceae and Chlorophyceae classes. The overall improvement in water quality validates the efficacy of management interventions aimed at restoring and conserving ecosystem functionality. Yet, these efforts are a deviation from natural estuarine functioning and thus a ‘catchment to coast’ approach that incorporates upstream nutrient mitigation measures is needed to achieve sustainable long-term management objectives.

Evaluation of the artificial sweetener sucralose as a sanitary wastewater tracer in Narragansett Bay, Rhode Island, USA

Narragansett Bay is an urban estuary that historically has been impacted by long-term discharge of sanitary wastewater (WW) effluents. High-density water sampling was conducted in Narragansett Bay, RI, USA, in an effort to understand the distribution and behavior of sucralose, an artificial sweetener that has shown utility as a sanitary wastewater tracer. Water samples were collected at sixty-seven sites and analyzed for sucralose, whose performance was compared to other tracers present in wastewater effluents. Concentrations of sucralose were much higher than the other tracers measured, carbamazepine and caffeine, ranging from 18 to 3180 ng/L and corresponded well with salinity (r2 = 0.88), demonstrating conservative behavior throughout the Bay. Mapped interpolation data using an empirical bayesian kriging model clearly show the spatial trends of WW and how estuarine processes influence dilution and dispersion throughout the Bay. These findings provide further evidence of the efficacy of sucralose as a wastewater tracer in large urban estuaries where continuous high-volume discharge of WW occur.

An integrated modelling system for water quality forecasting in an urban eutrophic estuary: The Swan-Canning Estuary virtual observatory

Effective short- and long-term estuarine water quality management decisions require a holistic view of estuarine response to multiple stressors that may be achieved through the integration of numerical modelling and observed data. Such an approach has been developed for the Swan-Canning Estuary system, a eutrophic urban estuary in Western Australia under threat from nutrient enrichment and a drying climate. Numerical modelling was integrated with long-term monitoring to develop the system Swan-Canning Estuary Virtual Observatory (SCEVO), which has been used to facilitate water quality management and streamline prediction workflows of hindcast, forecast, and environmental response functions. The system is based on a validated 3D water quality model, integrated within a data management system and related environmental models. A machine-learning method to improve the patchy and time-lagged catchment inputs is also highlighted. This work has identified that the key challenge associated with estuarine water quality prediction is the capability to (1) simulate internal physical and biogeochemical processes at suitable spatial resolution to resolve the gradients along the freshwater-ocean continuum; and (2) transition from using routine monitoring data as the basis for management decisions to using a diverse and integrated set of data streams as the basis for real-time operational decisions. Recommendations for high-frequency monitoring to support water quality modelling and dynamic integration between numerical and observed data for improved forecasting are discussed. • A real-time water quality forecasting system for an urban estuary was developed. • Machine-learning was used to fill and forecast flow and nutrient boundary conditions. • Three modelling workflows are described to meet the needs of various end-users. • Integrated data-modelling system can support short-term and long-term management.

Response to Channel Deepening of the Salinity Intrusion, Estuarine Circulation, and Stratification in an Urbanized Estuary

AbstractModifications for navigation since the late 1800s have increased channel depth (H) in the lower Hudson River estuary by 10–30%, and at the mouth the depth has more than doubled. Observations along the lower estuary show that both salinity and stratification have increased over the past century. Model results comparing predredging bathymetry from the 1860s with modern conditions indicate an increase in the salinity intrusion of about 30%, which is roughly consistent with the H5/3 scaling expected from theory for salt flux dominated by steady exchange. While modifications including a recent deepening project have been concentrated near the mouth, the changes increase salinity and threaten drinking water supplies more than 100 km landward. The deepening has not changed the responses to river discharge (Qr) of the salinity intrusion (~Qr−1/3) or mean stratification (Qr2/3). Surprisingly, the increase in salinity intrusion with channel deepening results in almost no change in the estuarine circulation. This contrasts sharply with local scaling based on local dynamics of an H2 dependence, but it is consistent with a steady state salt balance that allows scaling of the estuarine circulation based on external forcing factors and is independent of depth. In contrast, the observed and modeled increases in stratification are opposite of expectations from the steady state balance, which could be due to reduction in mixing with loss of shallow subtidal regions. Overall, the mean shift in estuarine parameter space due to channel deepening has been modest compared with the monthly‐to‐seasonal variability due to tides and river discharge.

Prevalence and proliferation of antibiotic resistance genes in the subtropical mangrove wetland ecosystem of South China Sea.

The emerging pollutants antibiotic resistance genes (ARGs) are prevalent in aquatic environments such as estuary. Coastal mangrove ecosystems always serve as natural wetlands for receiving sewage which always carry ARGs. Currently, the research considering ARG distribution in mangrove ecosystems gains more interest. In this work, we investigated the diversity of ARGs in an urban estuary containing mangrove and nonmangrove areas of the South China Sea. A total of 163 ARGs that classified into 22 resistance types and six resistance mechanisms were found. ARG abundance of the samples in the estuary is between 0.144 and 0.203. This is within the general range of Chinese estuaries. The difference analysis showed that abundances of total ARGs, six most abundant ARGs (mtrA, rpoB, rpoC, rpsL, ef‐Tu, and parY), the most abundant resistance types (elfamycin, multidrug, and peptide), and the most abundant resistance mechanism (target alteration) were significantly lower in mangrove sediment than that in nonmangrove sediment (p < 0.05). Network and partial redundancy analysis showed that sediment properties and mobile genetic elements were the most influential factors impacting ARG distribution rather than microbial community. The two factors collectively explain 51.22% of the differences of ARG distribution. Our study indicated that mangrove sediments have the capacity to remove ARGs. This work provides a research paradigm for analysis of ARG prevalence and proliferation in the subtropical marine coastal mangrove ecosystem.

Anthropogenic inputs from a coastal megacity are linked to greenhouse gas concentrations in the surrounding estuary

AbstractCoastal megacities deposit significant amounts of carbon (C), nitrogen (N), and pollutants into surrounding waters. In urbanized estuaries, these inputs, including wastewater discharge and surface runoff, can affect biogeochemical cycles, microbial production, and greenhouse gas (GHG) efflux. To better understand estuarine GHG production and its connection to anthropogenic drivers, we quantified carbon dioxide (CO2) and methane (CH4) surface‐water concentrations and efflux in combination with a suite of biogeochemical parameters, including anthropogenic indicators, in the Hudson River Estuary (HRE) and adjacent waters surrounding New York, NY, over a 2‐yr period. The HRE was a source of both CO2 (33 ± 3 mmol CO2 m−2 d−1) and CH4 (177 ± 22 μmol CH4 m−2 d−1) under all measured conditions. Surface‐water salinity, oxygen saturation, fecal indicator bacteria, nitrate concentrations, and temperature best explained the variance in CO2 and CH4 concentrations in multiple regression analyses, producing robust predictive power for both GHGs. Our multifaceted data set demonstrated that CH4 and CO2 surface concentrations are explained in part by enterococci concentrations, a widely used wastewater biological indicator, explicitly linking wastewater inputs to GHG surface concentrations in the HRE. The greatest CO2 and CH4 surface‐water concentrations were found in urban tributaries and embayments, primary wastewater delivery areas throughout the HRE. Estuarine tributaries and embayments have historically received less research attention than midchannel sites, but since these shallow sites may contribute to increased GHG efflux in anthropogenically impacted estuaries, further study is warranted.