Unusual Distribution Research Articles

Merkel cell carcinoma in the setting of hematologic disease is associated with unique features and potential pitfalls

Merkel cell carcinoma (MCC) is a rare but aggressive neuroendocrine carcinoma of the skin, often associated with polyomavirus and ultra-violet light exposure. Immunosuppression is associated with increased risk of development of MCC, including that associated with hematolymphoid disorders such as chronic lymphocytic leukemia/small lymphocytic lymphoma (CLL/SLL). We sought to determine whether MCC arising in patients with hematologic disorders showed unique features.Searching archived material at three institutions, we identified 13 patients with MCC and at least one hematologic malignancy and 41 patients with MCC with no reported hematologic malignancy. CLL/SLL was the most common hematologic disorder in this setting (9/13 cases). Clinical history, variation in morphologic appearance, unusual site distribution and concern for progression of underlying hematologic disease all contributed to potential diagnostic challenges. Overlapping marker expression between MCC and hematologic neoplasms created potential diagnostic pitfalls (e.g. CD138, Pax5, TdT, Bcl2, CD56, and CD117). In addition, we newly identify expression of CD5 and LEF-1 in a subset of MCC, including in patients with CLL/SLL.MCC in patients with hematologic malignancy were more common in men (92% versus 59%, p < 0.05) and showed an unusual site predilection to non-sun exposed sites (3/13 on the buttocks) with none presenting on the face or scalp. By contrast, face or scalp lesions were common in MCC without an associated hematologic malignancy (17/41, p < 0.05). Our findings reaffirm the need for skin surveillance in the setting of immune deficiency and for vigilance to identify unusual presentations of MCC in patients with or without hematologic disorders.

Integrating Stochastic and Deterministic Process in the Biogeography of N2-Fixing Cyanobacterium Candidatus Atelocyanobacterium Thalassa.

UCYN-A is one of the most widespread and important marine diazotrophs. Its unusual distribution in both cold/warm and coastal/oceanic waters challenges current understanding about what drives the biogeography of diazotrophs. This study assessed the community assembly processes of the nitrogen-fixing cyanobacterium UCYN-A, developing a framework of assembly processes underpinning the microbial biogeography and diversity. High-throughput sequencing and a qPCR approach targeting the nifH gene were used to investigate three tropical seas: the Bay of Bengal, the Western Pacific Ocean, and the South China Sea. Based on the neutral community model and two types of null models calculating the β-nearest taxon index and the normalized stochasticity ratio, we found that stochastic assembly processes could explain 66–92% of the community assembly; thus, they exert overwhelming influence on UCYN-A biogeography and diversity. Among the deterministic processes, temperature and coastal/oceanic position appeared to be the principal environmental factors driving UCYN-A diversity. In addition, a close linkage between assembly processes and UCYN-A abundance/diversity/drivers can provide clues for the unusual global distribution of UCYN-A.

Sex-Determination Mechanisms among Populations within Cryptic Species Complex of Calotes (Squamata: Agamidae: Draconinae)

Sex-determination mechanisms and sex chromosomes are known to vary among reptile species and, in a few celebrated examples, within populations of the same species. The oriental garden lizard, Calotes versicolor, is one of the most intriguing species in this regard, exhibiting evidence of multiple sex-determination modes within a single species. One possible explanation for this unusual distribution is that in C. versicolor, different modes of sex determination are confined to a particular population or a species within a cryptic species complex. Here, we report on a population genetic analysis using SNP data from a methylation-sensitive DArT sequencing analysis and mitochondrial DNA data obtained from samples collected from six locations: three from Bangladesh and three from Thailand. Our aim was to determine whether C. versicolor is best described as a single species with multiple lineages or as multiple species, as well as if its sex-determination mechanisms vary within or between species. We present evidence that the latter possibility is the case and that C. versicolor comprises a complex of cryptic species. We also identify sex-linked markers within these species and use them to identify modes of sex determination. Overall, our results suggest that different sex-determination modes have evolved among closely related species and within populations of Agamid lizards.

Multifractal wavefunctions of charge carriers in graphene with folded deformations, ripples, or uniaxial flexural modes: Analogies to the quantum Hall effect under random pseudomagnetic fields

The electronic behavior in graphene under arbitrary uniaxial deformations, such as foldings or flexural fields, is studied by including it in the Dirac equation pseudoelectromagnetic fields. General foldings are thus studied by showing that uniaxial deformations can be considered pseudomagnetic fields in the Coulomb gauge norm. This allows one to give an expression for the Fermi (zero) energy mode wavefunctions. For random deformations, contact is made with previous works on the quantum Hall effect under random magnetic fields, showing that the density of states has a power law behavior and that the zero energy mode wavefunctions are multifractal. This hints at an unusual electron velocity distribution. Also, it is shown that a strong Aharonov–Bohm pseudoeffect is produced. For more general nonuniaxial general flexural strain, it is not possible to use the Coulomb gauge. The results presented here helps to tailor-made graphene uniaxial deformations to achieve specific wavefunctions.

The young Hobson family: Possible binary parent body and low-velocity dispersal

Context.Asteroid families with ages younger than 1 Myr offer an interesting possibility of studying the outcomes of asteroid disruptions that are little modified by subsequent evolutionary processes.Aims.We analyze a very young asteroid family associated with (18777) Hobson in the central part of the main belt. We aim at (i) understanding its peculiar size distribution, and (ii) setting an upper limit on the characteristic dispersal velocity at subkilometer sizes corresponding to the smallest visible Hobson members.Methods.We identified the Hobson family using an up-to-date asteroid catalog. A significant increase in the number of its known members allowed us to study their size distribution and compare it with computer simulations of catastrophic disruptions. Backward orbital integrations of the heliocentric orbits allowed us to confirm the previously suggested age of Hobson and helped to estimate limits of the ejection speed.Results.The Hobson family has an unusual size distribution: two nearly equal-size bodies, followed by a population of smaller asteroids, whose distribution takes a characteristic power law. There are two possibilities to explain these data. Either a canonical impact onto a single parent body, requiring fine-tuned impact conditions that have not been studied so far, or an unconventional model for the parent object of the Hobson family, namely a binary with ≃7−9 km primary and a ≃2.5 km secondary. In the latter case, the primary was disrupted, leaving behind the largest remnant (18777) Hobson and a suite of subkilometer asteroids. The second largest asteroid, (57738) 2001 UZ160, is the nearly intact satellite of the parent binary. The excellent convergence of nominal orbits of Hobson members sets an upper limit of ≃(10−20) m s−1for the initial dispersal velocity of the known members, which is consistent with both formation models. The Hobson family provides a so far rare opportunity of studying disruptions of small asteroids in a situation in which both the material strength and reaccumulation efficiency play an important role.

Structures and Spin States of Iron(II) Complexes of Isomeric 2,6-Di(1,2,3-triazolyl)pyridine Ligands.

Iron(II) complex salts of 2,6-di(1,2,3-triazol-1-yl)pyridine (L1) are unexpectedly unstable in undried solvent. This is explained by the isolation of [Fe(L1)4(H2O)2][ClO4]2 and [Fe(NCS)2(L1)2(H2O)2]·L1, containing L1 bound as a monodentate ligand rather than in the expected tridentate fashion. These complexes associate into 44 grid structures through O-H···N hydrogen bonding; a solvate of a related 44 coordination framework, catena-[Cu(μ-L1)2(H2O)2][BF4]2, is also presented. The isomeric ligands 2,6-di(1,2,3-triazol-2-yl)pyridine (L2) and 2,6-di(1H-1,2,3-triazol-4-yl)pyridine (L3) bind to iron(II) in a more typical tridentate fashion. Solvates of [Fe(L3)2][ClO4]2 are low-spin and diamagnetic in the solid state and in solution, while [Fe(L2)2][ClO4]2 and [Co(L3)2][BF4]2 are fully high-spin. Treatment of L3 with methyl iodide affords 2,6-di(2-methyl-1,2,3-triazol-4-yl)pyridine (L4) and 2-(1-methyl-1,2,3-triazol-4-yl)-6-(2-methyl-1,2,3-triazol-4-yl)pyridine (L5). While salts of [Fe(L5)2]2+ are low-spin in the solid state, [Fe(L4)2][ClO4]2·H2O is high-spin, and [Fe(L4)2][ClO4]2·3MeNO2 exhibits a hysteretic spin transition to 50% completeness at T1/2 = 128 K (ΔT1/2 = 6 K). This transition proceeds via a symmetry-breaking phase transition to an unusual low-temperature phase containing three unique cation sites with high-spin, low-spin, and 1:1 mixed-spin populations. The unusual distribution of the spin states in the low-temperature phase reflects "spin-state frustration" of the mixed-spin cation site by an equal number of high-spin and low-spin nearest neighbors. Gas-phase density functional theory calculations reproduce the spin-state preferences of these and some related complexes. These highlight the interplay between the σ-basicity and π-acidity of the heterocyclic donors in this ligand type, which have opposing influences on the molecular ligand field. The Brønsted basicities of L1-L3 are very sensitive to the linkage isomerism of their triazolyl donors, which explains why their iron complex spin states show more variation than the better-known iron(II)/2,6-dipyrazolylpyridine system.

Distribution of Bioaerosols in Association With Particulate Matter: A Review on Emerging Public Health Threat in Asian Megacities

Occurrences and exposure to high levels of microbial bioaerosols such as pathogenic bacteria, fungi, fungal spores, and viruses can be linked to the deterioration of the environment and public health. This study aimed to review the results available for the unusual bioaerosol distribution scenario in the Asian regions. The amount of bioaerosol load and their environmental behavior in the atmosphere is heavily influenced by air pollution such as haze, fog, dust, and particulate matter (PM) and thus strongly affect the air quality index (AQI). Human factors such as heavy traffic, overcrowds, and biomass burning also affected the prevalence or occurrences of bioaerosols in the atmosphere. Seasonal/temporal and diurnal variation was significantly observed from these studies and in the case of South Asia, post-monsoon and winter months were incredibly concentrated with pathogenic bioaerosols. Many human infections, for example, pneumonia, tuberculosis, brucellosis, anthrax, and query fever (Q-fever), are linked to pathogenic bacterial bioaerosols. Respiratory diseases such as asthma and chronic pulmonary obstructiveness are related to fungal bioaerosols, spores, and viral infections. To facilitate the testing and monitoring appraisal of airborne bioaerosols, artificial intelligence, deep neural networks, and machine learning can be used to develop real-time PCR-based bioaerosol sensors. Moreover, mobile apps and compatible electronic gadgets can be developed for the city dwellers to real-time monitor the concentration of bioaerosols in the air they are breathing.

Transposable elements and introgression introduce genetic variation in the invasive ant Cardiocondyla obscurior

Introduced populations of invasive organisms have to cope with novel environmental challenges, while having reduced genetic variation caused by founder effects. The mechanisms associated with this "genetic paradox of invasive species" has received considerable attention, yet few studies have examined the genomic architecture of invasive species. Populations of the heart node ant Cardiocondyla obscurior belong to two distinct lineages, a New World lineage so far only found in Latin America and a more globally distributed Old World lineage. In the present study, we use population genomic approaches to compare populations of the two lineages with apparent divergent invasive potential. We find that the strong genetic differentiation of the two lineages began at least 40,000 generations ago and that activity of transposable elements (TEs) has contributed significantly to the divergence of both lineages, possibly linked to the very unusual genomic distribution of TEs in this species. Furthermore, we show that introgression from the Old World lineage is a dominant source of genetic diversity in the New World lineage, despite the lineages' strong genetic differentiation. Our study uncovers mechanisms underlying novel genetic variation in introduced populations of C.obscurior that could contribute to the species' adaptive potential.

Genome-wide analysis of butterfly bush (Buddleja alternifolia) in three uplands provides insights into biogeography, demography and speciation.

Summary Understanding processes that generate and maintain large disjunctions within plant species can provide valuable insights into plant diversity and speciation. The butterfly bush Buddleja alternifolia has an unusual disjunct distribution, occurring in the Himalaya, Hengduan Mountains (HDM) and the Loess Plateau (LP) in China.We generated a high‐quality, chromosome‐level genome assembly of B. alternifolia, the first within the family Scrophulariaceae. Whole‐genome re‐sequencing data from 48 populations plus morphological and petal colour reflectance data covering its full distribution range were collected.Three distinct genetic lineages of B. alternifolia were uncovered, corresponding to Himalayan, HDM and LP populations, with the last also differentiated morphologically and phenologically, indicating occurrence of allopatric speciation likely to be facilitated by geographic isolation and divergent adaptation to distinct ecological niches. Moreover, speciation with gene flow between populations from either side of a mountain barrier could be under way within LP. The current disjunctions within B. alternifolia might result from vicariance of a once widespread distribution, followed by several past contraction and expansion events, possibly linked to climate fluctuations promoted by the Kunlun–Yellow river tectonic movement. Several adaptive genes are likely to be either uniformly or diversely selected among regions, providing a footprint of local adaptations.These findings provide new insights into plant biogeography, adaptation and different processes of allopatric speciation.

Atypical DNA methylation, sRNA-size distribution, and female gametogenesis in Utricularia gibba

The most studied DNA methylation pathway in plants is the RNA Directed DNA Methylation (RdDM), a conserved mechanism that involves the role of noncoding RNAs to control the expansion of the noncoding genome. Genome-wide DNA methylation levels have been reported to correlate with genome size. However, little is known about the catalog of noncoding RNAs and the impact on DNA methylation in small plant genomes with reduced noncoding regions. Because of the small length of intergenic regions in the compact genome of the carnivorous plant Utricularia gibba, we investigated its repertoire of noncoding RNA and DNA methylation landscape. Here, we report that, compared to other angiosperms, U. gibba has an unusual distribution of small RNAs and reduced global DNA methylation levels. DNA methylation was determined using a novel strategy based on long-read DNA sequencing with the Pacific Bioscience platform and confirmed by whole-genome bisulfite sequencing. Moreover, some key genes involved in the RdDM pathway may not represented by compensatory paralogs or comprise truncated proteins, for example, U. gibba DICER-LIKE 3 (DCL3), encoding a DICER endonuclease that produces 24-nt small-interfering RNAs, has lost key domains required for complete function. Our results unveil that a truncated DCL3 correlates with a decreased proportion of 24-nt small-interfering RNAs, low DNA methylation levels, and developmental abnormalities during female gametogenesis in U. gibba. Alterations in female gametogenesis are reminiscent of RdDM mutant phenotypes in Arabidopsis thaliana. It would be interesting to further study the biological implications of the DCL3 truncation in U. gibba, as it could represent an initial step in the evolution of RdDM pathway in compact genomes.

Characterization of a novel variant in the HR1 domain of MFN2 in a patient with ataxia, optic atrophy and sensorineural hearing loss

Background: Pathogenic variants in MFN2 cause Charcot-Marie-Tooth disease (CMT) type 2A (CMT2A) and are the leading cause of the axonal subtypes of CMT. CMT2A is characterized by predominantly distal motor weakness and muscle atrophy, with highly variable severity and onset age. Notably, some MFN2 variants can also lead to other phenotypes such as optic atrophy, hearing loss and lipodystrophy. Despite the clear link between MFN2 and CMT2A, our mechanistic understanding of how dysfunction of the MFN2 protein causes human disease pathologies remains incomplete. This lack of understanding is due in part to the multiple cellular roles of MFN2. Though initially characterized for its role in mediating mitochondrial fusion, MFN2 also plays important roles in mediating interactions between mitochondria and other organelles, such as the endoplasmic reticulum and lipid droplets. Additionally, MFN2 is also important for mitochondrial transport, mitochondrial autophagy, and has even been implicated in lipid transfer. Though over 100 pathogenic MFN2 variants have been described to date, only a few have been characterized functionally, and even then, often only for one or two functions. Method: Several MFN2-mediated functions were characterized in fibroblast cells from a patient presenting with cerebellar ataxia, deafness, blindness, and diffuse cerebral and cerebellar atrophy, who harbours a novel homozygous MFN2 variant, D414V, which is found in a region of the HR1 domain of MFN2 where few pathogenic variants occur. Results: We found evidence for impairment of several MFN2-mediated functions. Consistent with reduced mitochondrial fusion, patient fibroblasts exhibited more fragmented mitochondrial networks and had reduced mtDNA copy number. Additionally, patient fibroblasts had reduced oxygen consumption, fewer mitochondrial-ER contacts, and altered lipid droplets that displayed an unusual perinuclear distribution. Conclusion: Overall, this work characterizes D414V as a novel variant in MFN2 and expands the phenotypic presentation of MFN2 variants to include cerebellar ataxia.

Areas of endemism of Lauraceae: new insights on the biogeographic regionalization of the Espinhaço Range, Brazil.

Using Lauraceae as a study case, we aimed in this article to: (i) delimit areas of endemism in the Espinhaço Range, Brazil; (ii) compare these areas of endemism with those previously delimited, as well as with the centres of endemism; (iii) evaluate the association between areas of endemism and vegetation types; and (iv) classify the areas of endemism according to the International Code of Area Nomenclature (ICAN). Based on a recent survey of 99 species from the Espinhaço Range, our dataset consisted of 34 endemic species belonging to nine genera. Following previous studies, we performed parsimony analysis of endemicity (PAE) using a grid square size of 0.5° × 0.5°. We delimited four areas of endemism of Lauraceae: (i) Antônio dos Santos, (ii) Conceição do Mato Dentro, (iii) Itambé do Mato Dentro, and (iv) Rio de Contas; and confirmed six previously delimited areas of endemism: (i) Southern MG, (ii) Southern Mountains Complex, (iii) Conceição do Mato Dentro, (iv) Diamantina Plateau, (v) Serra do Cabral, and (vi) Chapada Diamantina. The areas of endemism Conceição do Mato Dentro, Serra do Cabral, Diamantina, and Serra do Cipó were classified as subdistricts in the Diamantina Plateau district of the Southern Espinhaço province. We summarized and mapped all areas of endemism corresponding to the provinces, districts, and subdistricts that cover the Espinhaço Range. Areas of endemism and centres of endemism are contrasted. Finally, we highlight that the biogeographic studies along this mountain range should embrace higher taxa with representative species in different types of vegetation in order to enrich the majority of the endemism studies mainly concentrated on the campo rupestre. Unusual distribution patterns, diversity of vegetation types, and the presence of restricted species and monophyletic groups open up opportunities to carry out integrative studies concerning the biogeographic regionalization of the ER at multiple spatio-temporal scales.

Molecular Phylogeny, Character Evolution, and Biogeography of Hydrangea Section Cornidia, Hydrangeaceae.

Background: Hydrangea section Cornidia consists of 26 currently accepted species and a yet undefined number of new species and erroneously synonymized taxa. This clade consists of (sub)tropical lianas occurring from northern Mexico to southern Chile and Argentina, and one species from Southeast Asia. Currently, no molecular phylogenetic hypothesis is available that includes more than a few species of this section. Hence, a resolved and well-sampled molecular phylogenetic hypothesis may help to enforce taxonomic decisions. In this study, we present a phylogenetic framework based on sequences from two low copy nuclear genes from a comprehensive taxon sampling of H. section Cornidia and a selection of outgroups. Our phylogenetic reconstructions prove the non-monophyly of the traditionally recognized subsections Monosegia and Polysegia and their corresponding series, Speciosae and Aphananthae, and Synstyleae and Chorystyleae, respectively. Three morphologically defined species were recovered with high support as monophyletic, namely, Hydrangea panamensis, Hydrangea serratifolia, and Hydrangea tarapotensis. However, statistical support for some shallow nodes did not allow to refute, with high support, the monophyly of several of the herein recognized species for which more than one individual could be analyzed. Based on the obtained phylogenetic framework, we reconstructed the evolution of selected reproductive characters. Hydrangea section Cornidia is the only genus section for which dioecism has been extensively documented. Our character reconstruction of sexual dimorphism shows that dioecism is the ancestral state in this section and that this was reversed to monoecy in Hydrangea seemannii and Hydrangea integrifolia. Character reconstruction for the enlarged marginal flowers recovered their presence as the ancestral character state in H. section Cornidia, although at least three internal lineages independently lost them; thus, losses were reconstructed to be more likely than gain. With respect to the flower color, more species exhibit white than red flowers, and white is reconstructed as the ancestral state. Cornidia also shows an unusual disjunct geographic distribution between Asia and Central Mesoamerica—South America, as it is not present in the USA and Canada. The origin of Cornidia is reconstructed to be the New World with higher probability, and the presence of one species in Asia is likely due to long-distance dispersal.

Prevalence of cervical HPV infection, sexually transmitted infections and associated antimicrobial resistance in women attending cervical cancer screening in Mali

To assess the prevalence of sexually transmitted infections (STIs), antimicrobial resistance and cervical lesions among women from Sikasso, Mali. Women infected with human immunodeficiency virus (HIV) (n=44) and HIV-negative women (n=96) attending cervical cancer screening were included. Screening for human papillomavirus (HPV), Chlamydia trachomatis (CT), Mycoplasma genitalium (MG), Neisseria gonorrhoeae (NG) and Trichomonas vaginalis (TV) was performed using polymerase chain reaction assays, and herpes simplex virus (HSV-1/2) serological status was assessed using enzyme-linked immunosorbent assays. Antibiotic resistance tests were performed for MG- and NG-positive cases. A high prevalence of high-risk HPV (hrHPV) infection (63%) was found. This was associated with cervical lesions in 7.5% of cases. An unusual distribution was found, with HPV31, HPV56 and HPV52 being the most prevalent. The hrHPV distribution differed by HIV status, with HIV-positive cases having HPV35/31/51-52-56 and HIV-negative cases having HPV31/56/52. The seroprevalence of HSV-2 was 49%, and the prevalence of other STIs was as follows: CT, 4%; MG, 9%; NG, 1%; and TV, 7%. Five of nine MG-positive specimens and the NG strains obtained were resistant to fluoroquinolone. These results showed high prevalence of hrHPV and fluoroquinolone resistance in several NG and MG strains. Further studies are required to confirm these data in Mali, and to improve prevention, screening and management of cervical cancer and other STIs in women.

Whole-exome sequencing reveals insights into genetic susceptibility to Congenital Zika Syndrome.

Congenital Zika Syndrome (CZS) is a critical illness with a wide range of severity caused by Zika virus (ZIKV) infection during pregnancy. Life-threatening neurodevelopmental dysfunctions are among the most common phenotypes observed in affected newborns. Risk factors that contribute to susceptibility and response to ZIKV infection may be related to the virus itself, the environment, and maternal genetic background. Nevertheless, the newborn’s genetic contribution to the critical illness is still not elucidated. Here, we aimed to identify possible genetic variants as well as relevant biological pathways that might be associated with CZS phenotypes. For this purpose, we performed a whole-exome sequencing in 40 children born to women with confirmed exposure to ZIKV during pregnancy. We investigated the occurrence of rare harmful single-nucleotide variants (SNVs) possibly associated with inborn errors in genes ontologically related to CZS phenotypes. Moreover, an exome-wide association analysis was also performed using a case-control design (29 CZS cases and 11 controls), for both common and rare variants. Five out of the 29 CZS patients harbored known pathogenic variants likely to contribute to mild to severe manifestations observed. Approximately, 30% of affected individuals carried at least one pathogenic or likely pathogenic SNV in genes candidates to play a role in CZS. Our common variant association analysis detected a suggestive protective effect of the rs2076469 in DISP3 gene (p-value: 1.39 x 10−5). The IL12RB2 gene (p-value: 2.18x10-11) also showed an unusual distribution of nonsynonymous rare SNVs in control samples. Finally, genes harboring harmful variants are involved in processes related to CZS phenotypes such as neurological development and immunity. Therefore, both rare and common variations may be likely to contribute as the underlying genetic cause of CZS susceptibility. The variations and pathways identified in this study may also have implications for the development of therapeutic strategies in the future.

Phytogeographic History of the Tea Family Inferred Through High-Resolution Phylogeny and Fossils.

The tea family (Theaceae) has a highly unusual amphi-Pacific disjunct distribution: most extant species in the family are restricted to subtropical evergreen broadleaf forests in East Asia, while a handful of species occur exclusively in the subtropical and tropical Americas. Here, we used an approach that integrates the rich fossil evidence of this group with phylogenies in biogeographic analysis to study the processes behind this distribution pattern. We first combined genome-skimming sequencing with existing molecular data to build a robust species-level phylogeny for c.130 Theaceae species, resolving most important unclarified relationships. We then developed an empirical Bayesian method to incorporate distribution evidence from fossil specimens into historical biogeographic analyses and used this method to account for the spatiotemporal history of Theaceae fossils. We compared our method with an alternative Bayesian approach and show that it provides consistent results while significantly reduces computational demands which allows analyses of much larger data sets. Our analyses revealed a circumboreal distribution of the family from the early Cenozoic to the Miocene and inferred repeated expansions and retractions of the modeled distribution in the Northern Hemisphere, suggesting that the current Theaceae distribution could be the remnant of a larger continuous distribution associated with the boreotropical forest that has been hypothesized to occupy most of the northern latitudes in the early Cenozoic. These results contradict with studies that only considered current species distributions and showcase the necessity of integrating fossil and molecular data in phylogeny-based parametric biogeographic models to improve the reliability of inferred biogeographical events. [Biogeography; genome skimming; phylogenomics; plastid genome; Theaceae.].

Effects of electron beam irradiation on a Ag/AsS2 bilayer using conductive atomic force microscopy

Metal-chalcogenide systems are used in a variety of fields, including microelectromechanical systems, plasmonics, photonics and the fabrication of X-ray masks. The development of fabrication methods for micro- and nanostructures in metal-chalcogenide bilayers is of significant interest for these fields. This study investigates the effects of electron beam irradiation in an Ag/AsS2 bilayer using conductive atomic force microscopy. An unusual distribution of conductivity is observed, which suggests the presence of at least two competing mechanisms of Ag-ion migration within the amorphous chalcogenide during electron beam irradiation. The surface relief of the Ag/AsS2 bilayer is modified by an electric field from the conductive atomic force microscopy probe.

Unusual distribution of a non-classical MHC I restricted CD8+ T population

Abstract A broad repertoire of peptides is constitutively presented through the MHC I molecules on the cell surface. ER aminopeptidase associated with Ag processing (ERAAP), a critical molecule in the antigen processing and presentation pathway, has profound effects on the generation of this peptide repertoire. Interestingly, the ERAAP deficient cells can be effectively detected by a unique population of the cytotoxic CD8+ T cell, named QFL-T cells which are specific for the ligand presented by the non-classical MHC Ib molecule, Qa-1b. The QFL-T cells showed similar characteristics with the other non-classical MHC Ib restricted unconventional T cells, such as the NKT or MAIT cells in their semi-invariant αβ TCRs, but their function(s) remains unknown. To study the potential function of the QFL-T cells, we assessed a variety of tissues for the ligand expression and the presence of the QFL-T cells. We observed high expression of this ERAAP dependent Qa-1b restricted ligand and relatively high frequency of the QFL-T cells in the small intestine. Remarkably, the number and the frequency of QFL-T cells among the intraepithelial lymphocytes (IELs) was tightly associated with the age and the gut microbiota of the mice. These findings suggest a role for gut microbiota in the homing/maintenance of the QFL-T cells in the small intestine.

Intermetallic Charge Transfer in V-Substituted PbCrO3

PbCrO3 features an unusual charge distribution Pb0.52+Pb0.54+Cr3+O3 with Pb charge disproportionation at ambient pressure. A charge transfer between Pb and Cr is induced by the application of pressure resulting in Pb2+Cr4+O3 charge distribution and a large volume collapse. Here, structural and charge distribution changes in PbCr1-xVxO3 are investigated. Despite a cubic crystal structure in 0 ≤ x ≤ 0.60, discontinuous reduction in the unit cell volume was observed between x = 0.35 and 0.40. Hard X-ray photoemission spectroscopy confirmed the change in Pb charge state from the coexisting Pb2+ and Pb4+ at x = 0.35 to single Pb2+ at x = 0.40. This indicates that V substitution stabilizes the high pressure cubic Pb2+Cr4+O3-type phase. With further increase in the V substitution, the PbVO3-type polar tetragonal phase appeared at x = 0.80.

Analysis of Peptide Stereochemistry in Single Cells by Capillary Electrophoresis-Trapped Ion Mobility Spectrometry Mass Spectrometry.

Single cell analysis strives to probe molecular heterogeneity in morphologically similar cell populations through quantitative or qualitative measurements of genetic, proteomic, or metabolic products. Here, we applied mass analysis of single neurons to investigate cell-cell signaling peptides. The multiplicity of endogenous cell-cell signaling peptides is a common source of chemical diversity among cell populations. Certain peptides can undergo post-translational isomerization of select residues, which has important physiological consequences. The limited number of single cell analysis techniques that are sensitive to peptide stereochemistry make it challenging to study isomerization at the individual cell level. We performed capillary electrophoresis (CE) with mass spectrometry (MS) detection to characterize the peptide content of single cells. Using complementary trapped ion mobility spectrometry (TIMS) separations, we measured the stereochemical configurations of three neuropeptide gene products derived from the pleurin precursor in individual neurons (N = 3) isolated from the central nervous system of Aplysia californica. An analysis of the resultant mobility profiles indicated >98% of the detectable pleurin-derived peptides exist as the nonisomerized, all-l forms in individual neuron cell bodies. However, we observed 44% of the Plrn2 peptide from the pleurin precursor was present as the isomerized, d-residue-containing form in the nerve tissue. These findings demonstrate an unusual distribution of isomerized peptides in A. californica and establish CE-TIMS MS as a powerful analytical tool for investigating peptide stereochemistry at the single cell level.