Background: The most non-synonymous polymorphisms in the cytomegalovirus (CMV) UL97 gene were widely recognized as drugresistant mutations. However, the synonymous mutations in it were almost ignored and rarely analyzed. Methods: In this article, 68 nucleic acid sequences of the UL97 gene (1399-2068 nt) from 3 different populations were compared, and a phylogenetic tree was constructed and analyzed in combination with clinical information. Results: Most of the polymorphisms found in the UL97 gene were synonymous compared with the AD169 strain, except in 1550 nt (a-g) and 1553 nt (g-a) loci. The sequences in cluster 1 of this tree were mainly from the pediatric patients, while cluster 2 primarily was from the HSCT recipients. However, all 13 sequences of renal-transplanted recipients were almost equally distributed in clusters 1 and 2. The biggest difference between these 2 parts of renaltransplanted patients was the median days after transplantation: 358 days in cluster 1 vs 74 days in cluster 2, which was highly correlated with immunity of transplanted patients. Conclusions: The polymorphism types of the UL97 gene are closely correlated with the different populations. Our findings also suggest that polymorphic editing of the UL97 gene is most likely attributed to the immune environment of the host.
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