Tidal Flat Sediments Research Articles

The Hummocky Patches and Associated Sediment Dynamics Over an Accretional Intertidal Flat

Tidal flat system is composed of multiple sub-scale geomorphological units. We found a new mesoscale geomorphological unit on sand-mud mixed intertidal zone along China coast, which was defined as hummocky patches. Hummock patches are most developed in middle tidal flat, with horizontal magnitude of 10–20 m and vertical magnitude of ∼15 cm. Hummocky patches significantly influence local sediment transport, thus affect morphological evolution of tidal flats. In order to understand the formation and development mechanisms of hummocky patches, we collected hydrodynamics, topography, sediment properties, and substrate erosion thresholds data through an in-situ field observation covering a spring-neap tidal cycle over an accretional intertidal flat in Jiangsu, China. We found that sediment characteristics including sorting coefficient (σ: measuring the uniformity of sediment particles) and silt/clay/organic matter/water content are essentially different between hummocky patches and nearby seabed, which leads to spatially varied substrate erosion resistance. The measured erosion thresholds for patches are two times higher comparing to surrounding seabed sediment, which provides foundation for the formation of hummocky patches. Under the impact of periodical tidal currents and waves, surrounding seabed experiences considerably more erosion than patch area, which finally develops to hummocky patches. Therefore, hydrodynamic forces drive the formation and development of patches. The erosion resistance of patches decreases vertically from seabed surface to sublayer, causing initial erosion in the lower sublayer, followed by a mass collapse of the seabed surface layer. Hummocky patches are commonly found in middle tidal zone and their sizes decrease to the shore as tidal currents and waves attenuate with shoreward propagation. Hummocky patches have distinct seasonal variations, which only appear in summer and autumn when wind waves are comparatively lower than winter and spring. We infer the reason is that the strong hydrodynamics caused by winter storms cause larger bottom shear stress than the erosion threshold of hummocky patches, leading to destruction of hummocky patches and a smooth tidal flat surface. This study shed new insight on the knowledge of mesoscale geomorphological units and their formation and development in intertidal flats, which provides crucial information for developing more realistic tidal flat sediment transport and morphological models.

Tidal Flats as a Significant Carbon Reservoir in Global Coastal Ecosystems

Tidal flats are widely distributed and provide a variety of ecosystem services. Nevertheless, the consequences of tidal flat loss and implications for services such as carbon (C) sequestration have not been assessed. In unvegetated tidal flat ecosystems, sediment is the most important carbon reservoir, similar to that of vegetated coastal wetlands (i.e., mangroves, salt marshes, and seagrass). We examined the C stocks and C accumulation rate (CAR) reported from 123 locations of tidal flat around the world and compared these results with data from mangroves, salt marshes, and seagrass meadows. The global average CAR of tidal flats is 129.8 g C m-2 yr-1, with the top-meter sediments containing on average 86.3 Mg C ha-1. Globally, tidal flat can bury 6.8 Tg C (24.9 Tg CO2) per year and can store 0.9 Pg C (3.3 Pg CO2) in the top meter sediment. Assuming the same rate of loss tidal flats as in the past three decades and that all disturbed sediment C is remineralized, 4.8 Tg C will be lost from tidal flat sediments every year, equivalent to an emission of 17.6 Tg CO2 to the water column and atmosphere.

Marinomonas lutimaris sp. nov., isolated from a tidal flat sediment of the East China Sea

A Gram-stain-negative bacterial strain, designated as E165T, was isolated from a tidal flat sediment of the East China Sea. Strain E165T grew optimally at pH 6, at 32 °C and with 1-2 % (w/v) NaCl. The 16S rRNA gene sequence similarity results revealed that strain E165T was most closely related to Marinomonas rhizomae IVIA-Po-145T, Marinomonas polaris CK13T, Marinomonas foliarum IVIA-Po-155T, Marinomonas hwangdonensis HDW-15T, Marinomonas pontica 46-16T, Marinomonas mangrovi B20-1T and Marinomonas shanghaiensis DSL-35T with values of 97.0-98.5 %. The digital DNA-DNA hybridization and average nucleotide identity values between strain E165T and the reference strains were 21.9-34.3 % and 77.6-87.3 %, respectively. The DNA G+C content of the isolate was 42.9 mol%. Strain E165T contained Q-8 as the sole ubiquinone and C16 : 0, summed feature 8 (C18 : 1 ω7c and/or C18 : 1 ω6c) and summed feature 3 (C16 : 1 ω7c and/or C16 : 1 ω6c) as the major fatty acids. The major polar lipids of strain E165T were diphosphatidylglycerol, phosphatidylethanolamine, phosphatidylglycerol, aminolipid and aminophospholipid. On the basis of phenotypic characteristics, phylogenetic analysis and DNA-DNA relatedness, a novel species, Marinomonas lutimaris sp. nov., is proposed with E165T (=MCCC 1K06241T=KCTC 82809T) as the type strain.

Geotechnical properties of some tidal flat sediments of Khor-Abdullah coast, southern Iraq

This research involves geotechnical studies for some tidal flat sediments of Khor-Abdulla coast in the southern Basra city. This area has an important strategic location in future, the Iraqi Government intending to establish large engineering projects such as a big Basrah port. Sediment samples have been taken at a depth of 1.25 m to study the physical, chemical, and engineering properties of this region’s sediment. The investigation results reveal that its average high natural moisture was 37.5 %, Liquid Limit LL 45.5 %, Plastic Limit PL 26.5 %, Plasticity Index PI 19%. Hence, these sediments show high clay percentages (85-65%). It can be classified as Silty Clay sediments with low plasticity. Engineering tests resulted in average Compression Strength of 206 kN/m2, Max. dry density 1.63 g/cm3 while consolidation coefficient 0.15 m2/year, consolidation index (0.28) with initial consolidation 35.5 kN/m2, and swelling index 0.071. These factors indicate a week sediment with low plasticity. Chemical tests results reveal high concentrations of sulfates chlorides, and organic matters. TDS were 30666 mg/l, CaCO3 41 mg/l, sulfate 2987 mg/l, Mg 600 mg/l, Ca 46.6 mg/l, and chlorides 1334.2 mg/l. while EC 44.5 mmhos/cm, pH 7.7.
 

Proteiniclasticum aestuarii sp. nov., isolated from tidal flat sediment, and emended descriptions of the genus Proteiniclasticum and Proteiniclasticum ruminis.

A novel bacterium, designated SCR006T, was isolated from tidal flat sediment from Suncheon Bay, Republic of Korea. Cells of strain SCR006T were strictly anaerobic, motile cocci, Gram-reaction-negative, and catalase- and oxidase-negative. Growth was observed at 4-41 °C (optimum, 34-37 °C), at pH 6.5-10.0 (optimum, pH 7.0-7.5) and in presence of 0-8 % NaCl (optimum, 0-2 %). Fermentation products of peptone-yeast-glucose medium were acetate and ethanol. Results of phylogenetic analyses based on 16S rRNA gene sequences indicated that strain SCR006T had high sequence similarity to Proteiniclasticum ruminis D3RC-2T (97.9 %), followed by Youngiibacter multivorans DSM 6139T (95.9 %) and Youngiibacter fragilis 232.1T (95.0 %). The average nucleotide identity value between strain SCR006T and P. ruminis DSM 24773T was 72.7 %, which strongly supported that strain SCR006T reresents a novel species within the genus Proteiniclasticum. The major cellular fatty acids are iso-C15 : 0 (27.2 %) and anteiso-C15 : 0 (16.9 %). The polar lipids were diphosphatidylglycerol, phosphatidylglycerol, two unidentified phospholipids, an unidentified aminolipid and five unidentified lipids. The genomic size was 3.2 Mb with genomic DNA G+C content of 45.6 mol%. The results of 16S rRNA-based and genome-based phylogenetic tree analyses indicated that SCR006T should be assigned to the genus Proteiniclasticum. Strain SCR006T could be distinguished from P. ruminis D3RC-2T by its growth conditions, cell morphology and genomic characteristics. Based on the phenotypic, phylogenetic, genomic and chemotaxonomic features, strain SCR006T represents a novel species, for which the name Proteiniclasticum aestuarii sp. nov. is proposed, with the type strain SCR006T (=KCTC 25245T= JCM 34531T).

Lost in the North Sea-Geophysical and geoarchaeological prospection of the Rungholt medieval dyke system (North Frisia, Germany).

We performed geophysical and geoarchaeological investigations in the Wadden Sea off North Frisia (Schleswig-Holstein, Germany) to map the remains and to determine the state of preservation of the medieval settlement of Rungholt, especially its southern dyke segment, called the Niedam dyke. Based on archaeological finds and historical maps, Rungholt is assumed to be located in the wadden sea area around the island Hallig Südfall. During medieval and early modern times, extreme storm events caused major land losses, turning cultivated marshland into tidal flats. Especially the 1st Grote Mandrenke (or St. Marcellus' flood), an extreme storm surge event in 1362 AD, is addressed as the major event that flooded and destroyed most of the Rungholt cultural landscape. Cultural traces like remains of dykes, drainage ditches, tidal gates, dwelling mounds or even plough marks were randomly surveyed and mapped in the tidal flats by several authors at the beginning of the 20th century. Due to the tidal flat dynamics with frequently shifting tidal creeks and sand bars, the distribution of cultural remains visible at the surface is rapidly changing, making it hard to create a comprehensive map of the cultural landscape by surveying. Today, the Niedam dyke area is fully covered by tidal flat sediments, depriving any remains from further archaeological investigation. Since little is known about the precise location or state of preservation of these remains, our investigation aimed at the rediscovery of the medieval dyke system and associated structure with modern and accurate geophysical, geodetical and geoarchaeological methods. Magnetic gradiometry revealed a large part of the medieval dyke, confirming two tidal gates and several terps connected inland with the dyke, providing a detailed example of a Frisian medieval dyke system. Based on our results, the so far inaccurate and incomplete maps of this part of Rungholt can now be specified and completed. Beyond that, seismic reflection profiles give a first depth resolving insight in the remains of the dyke system, revealing a severe threat to the medieval remains by erosion. The site is exemplary for the entire North Frisian coast, that was influenced by multiple flood events in the middle ages to modern times.

Integrated analysis of exoskeletal surface profile and chitin-related gene expression on Macrophthalmus japonicus mud crabs exposed to hexabromocyclododecane

Hexabromocyclododecanes (HBCDs), widely used brominated flame retardants, easily accumulate in aquatic organisms such as Macrophthalmus japonicus crabs, which inhabit tidal flat sediments. To analyze the effects of HBCD exposure in chitin-formed exoskeleton, we investigated molecular responses of chitin-related genes as well as physical changes of the exoskeletal surface form as a new biological end-point on M. japonicus. The expression patterns of chitin biosynthesis-, modification-, and degradation-related genes in the gills and hepatopancreases of M. japonicus were also analyzed. Additionally, the survivability and exoskeleton surface profiles of M. japonicus crabs were evaluated. M. japonicus chitin synthase expression was significantly downregulated, whereas that of the chitinase transcript was significantly upregulated upon exposure to all HBCD concentrations on day 7. Contrastingly, the gene expression of chitin deacetylase 1 significantly increased upon exposure to all HBCD concentrations on day 1, and this increase was significantly elevated on day 4. The expression of chitin deacetylase 1 was dose-dependent. Additionally, decreased survival and exoskeleton surface profile changes were observed in M. japonicus crabs exposed to all HBCD concentrations. These results suggest that exposure to HBCD induces changes in the synthesis, modification, and degradation of chitin, a pivotal component of the cuticular exoskeleton, and may disrupt the exoskeletal surface structure in M. japonicus crabs.

Identification of the sources and influencing factors of the spatial variation of heavy metals in surface sediments along the northern Jiangsu coast

Determining the sources and factors influencing the spatial variation of heavy metals in the surface sediments of tidal flats is important for controlling and reducing heavy metal pollution. We used principal component analysis and partial least square regression to analyse the distribution characteristics, sources, and factors influencing the spatial variation of nine heavy metals (As, Co, Cr, Cu, Mn, Ni, Pb, V, and Zn) in the surface sediments of tidal flats along four sites located on the northern Jiangsu coast. Our results indicate that the northern three sampling areas had a high heavy metal content, whereas the southern sampling area had a low heavy metal content. The heavy metals Mn and Pb are related to both natural and anthropogenic sources, whereas V and Cr are primarily derivatives of human activities, and As, Co, Cu, Ni, and Zn are primarily a result of natural processes. The spatial variation of Mn and Pb was primarily affected by the total inorganic carbon and clay content (positive affect) as well as the sand and silt content (negative affect). The spatial variation of V and Cr was primarily related to silt, clay, and total phosphorus content (positive influence) as well as sand (negative influence). In addition, the spatial variation of As, Co, Cu, Ni, and Zn was primarily influenced by the total organic carbon and clay content (positive effect) as well as sand and pH (negative effect). The grain size of sediments plays an important role in the spatial variation of heavy metals in the surface sediments of tidal flats, with fine-grained clay materials being related to the enrichment of heavy metals. The results of our study are important for the control and reduction of heavy metal pollution in coastal sediments, protecting both the ecological environment and human health.

Marinobacter arenosus sp. nov., a halotolerant bacterium isolated from a tidal flat.

A Gram-negative, rod-shaped, motile bacterium, designated strain CAU 1620T, was isolated from a tidal flat sediment in Incheon, Republic of Korea. Strain CAU 1620T grew optimally at 30°C and pH 8.0 in the presence of 6.0% (w/v) NaCl. The results of 16S rRNA gene sequence analysis revealed that strain CAU 1620T showed the highest similarity to Marinobacter adhaerens DSM 23420T (98.5%), followed by Marinobacter algicola DSM 16394T (98.3%) and Marinobacter maroccanus LMG 30465T (98.2%). The average nucleotide identity and digital DNA-DNA hybridisation values between strain CAU 1620T and related strains were estimated as 75.6-78.1% and 19.5-20.9%, respectively. The DNA G + C content based on the draft genome sequence was 59.2%, and the major respiratory quinone was ubiquinone-9. The predominant cellular fatty acids were C12:0, C16:0, C18:1 ω9c, and C12:0 3OH. The predominant polar lipids were diphosphatidylglycerol, phosphatidylethanolamine, and phosphatidylglycerol. According to phenotypic, genotypic, and chemotaxonomic analyses, strain CAU 1620T represents a novel species of the genus Marinobacter, for which the name Marinobacter arenosus sp. nov. is proposed. The type strain is CAU 1620T (= KCTC 82431T = MCCC 1K06079T).

16S rRNA sequences of Exiguobacterium spp. bacteria dominant in a biofloc pond cultured with whiteleg shrimp, Penaeus vannamei

Biofloc technology is being applied increasingly in shrimp aquaculture. Many countries have adopted this technology to increase shrimp aquaculture production. Owing to its major importance, this study was conducted to identify the bacterial population from biofloc aquaculture shrimp pond water of Singkir Laut, Kedah, Malaysia. Samples of mature biofloc were collected from the biofloc pond water at different shrimp ages (day of culture [DOC]): DOC30, DOC60 and DOC90. Overall, 43 sequences of bacterial species were blasted, which were identified as Exiguobacterium spp., Bacillus spp., Vibrio spp., Acinetobacter junii, Cobetia marina, Rheinheimera aquimaris and Pseudoalteromonas spp. These bacterial species were identified mostly from heterotrophic plate count agar. The bacterial species of Exiguobacterium aestuarii, Exiguobacterium profundum and Exiguobacterium aurantiacum were identified with 16S rRNA gene sequence similarities of 98.45–99.44%. Bacterial species of Bacillus pumilus, Bacillus velezensis, Bacillus cereus, Bacillus safensis and Bacillus subtilis were identified with 16S rRNA gene sequence similarities of 98.81–99.21%. Bacterial species of Vibrio diazotrophicus, Vibrio diabolicus, Vibrio natriegens and Vibrio harveyi were identified with 16S rRNA gene sequence similarities of 98.03–99.19%. Bacteria from Rheinheimera aquimaris were also identified with 16S rRNA gene sequence similarities of 98.69–99.26%; this bacterium is a novel bacterium identified from biofloc samples of the present study and has not been reported from biofloc samples in any previous study. Exiguobacterium spp. from the novel strains of E. aestuarii and E. profundum were identified as dominant, with 23 of 43 samples isolated from a shrimp pond at time points DOC30, DOC60 and DOC90; these bacteria are Gram-variable rod-shaped organisms that are capable of producing extracellular enzyme activity to break down chemical structures, thereby helping to remove organic compounds from aquaculture waste. Exiguobacterium spp. are usually identified in tidal flat sediments and on muddy sea coasts. This discovery is consistent with the site of the shrimp pond near to a muddy beach area, which might be the source of seawater leading to the predominance of this type of bacteria in the biofloc samples in the studied pond.

Evidence for Upper Cretaceous seismites in the Abu Tartur area, Western Desert, Egypt

Upper Cretaceous tidal-flat sediments of the Abu Tartur region, Western Desert of Egypt, contain a variety of soft-sediment deformation structures (SSDSs) in the Mut Member of the Quseir Formation and the overlying Duwi Formation. Here, we document recognition of a set of SSDSs characterized by complex morphology and large size. The SSDS include: 1) water-escape structures, 2) minor recumbent, chevron, and slump folds, 3) syn-sedimentary minor faults, 4) neptunian dykes, 5) regular ball-and-pillow structures, flattened pseudo-nodules, and load casts, 6) syn-sedimentary undulations, 7) fractures and joints, 8) sand injectites, and 9) autoclastic breccia and brecciated siderite clasts. The dimensions of the SSDSs range from a few centimeters to several decimeters. Both extensional and contractional forces appear to have been involved in development of these structures. A detailed analysis of facies relationships, combined with consistent orientations of SSDSs and the regional tectonics of the target area suggests earthquakes as the triggering mechanism for sediment deformation and large-scale mass failure. The deformed strata are consistent with most of the well-known criteria of typical seismites. Thus, syn-sedimentary liquefaction was identified as the primary driving force in most of the observed deformation horizons for these Upper Cretaceous SSDSs in the Abu Tartur area.

Croceicoccus gelatinilyticus sp. nov., isolated from a tidal flat sediment.

A novel Gram-staining-negative and short-rod-shaped bacterial strain designated as 1NDH52T was isolated from a tidal flat sediment and characterized using a polyphasic taxonomic approach. The predominant cellular fatty acids of strain 1NDH52T were summed feature 8 (C18:1 ω7c and/or C18:1 ω6c) and C14:0 2-OH; the major polar lipids were diphosphatidylglycerol, phosphatidylcholine, phosphatidylethanolamine, phosphatidylglycerol and sphingoglycolipid; the major respiratory quinone was Q-10. Phylogenetic analysis based on 16S rRNA gene sequences showed that strain 1NDH52T was closely related to type strains Croceicoccus sediminis S2-4-2T (98.9%), Croceicoccus bisphenolivorans H4T (98.9%) and Croceicoccus pelagius Ery9T (98.7%). Phylogenomic analysis indicated that strain 1NDH52T formed an independent branch distinct from all type strains of this genus. The overall genome related indices including the digital DNA-DNA hybridization values, average nucleotide identities and average amino acid identities between strain 1NDH52T and the three close relatives above indicated that strain 1NDH52T should represent a novel genospecies. The genomic DNA G + C content was 62.6%. Strain 1NDH52T could produce carotenoids and its genome contained the complete carotenoids biosynthetic gene cluster. Based on the phenotypic and genotypic characteristics, strain 1NDH52T is concluded to represent a novel species of the genus Croceicoccus, for which the name Croceicoccus gelatinilyticus sp. nov., is proposed. The type strain of the species is 1NDH52T (= GDMCC 1.2381T = KCTC 82668T).

Spatial Distributions of Nitrogen and Phosphorus in Surface Sediments in Intertidal Flats of the Yellow River Delta, China

The spatial distributions of nitrogen (N) and phosphorus (P) in surface sediments are of great significance in studying the ecological process of nutrient cycling in intertidal flats. However, little is known about N and P’s spatial distribution in intertidal flats of the Yellow River Delta (YRD). We analyzed the N and P contents in surface sediments and Suaeda glauca density at the low-tidal level to identify the spatial distributions of nutrients and their influencing factors in coastal tidal flat sediments. The results showed that the total nitrogen (TN) and total phosphorus (TP) concentrations in this study were both lower than the background values of China’s shallow sea sediments. The spatial distributions of N and P had significantly spatial heterogeneity, while those of the nutrients at different distances from the low-tidal level to the coastline showed no significant distance effects. The spatial distribution of S. glauca in coastal tidal flats had significant location characteristics and was closely related to the distribution of TN and pH. The TN in non-estuarine intertidal flats was less than that in estuaries; in contrast, the TP was higher in non-estuaries. There are some differences of N and P between estuary and non-estuary areas.

A sulfate-reducing bacterial genus, Desulfosediminicola gen. nov., comprising two novel species cultivated from tidal-flat sediments

Tidal-flat sediments harbor a diverse array of sulfate-reducing bacteria. To isolate novel sulfate-reducing bacteria and determine their abundance, a tidal-flat sediment sample collected off Ganghwa Island (Korea) was investigated using cultivation-based and culture-independent approaches. Two Gram-stain-negative, strictly anaerobic, rod-shaped, sulfate-reducing bacteria, designated IMCC35004T and IMCC35005T, were isolated from the sample. The two strains reduced sulfate, sulfite, elemental sulfur, thiosulfate, Fe(III) citrate, and Mn(IV) oxide by utilizing several carbon sources, including acetate. The 16S rRNA gene amplicon sequencing revealed that the tidal-flat sediment contained diverse members of the phylum Desulfobacterota, and the phylotypes related to IMCC35004T and IMCC35005T were < 1%. The two strains shared 97.6% similarity in 16S rRNA gene sequence and were closely related to Desulfopila aestuarii DSM 18488T (96.1–96.5%). The average nucleotide identity, level of digital DNA–DNA hybridization, average amino acid identity, and percentages of conserved proteins determined analyzing the whole-genome sequences, as well as the chemotaxonomic data showed that the two strains belong to two novel species of a novel genus. Additionally, genes related to dissimilatory sulfate reduction were detected in the genomes of the two strains. Unlike the genera Desulfopila and Desulfotalea, IMCC35004T and IMCC35005T contained menaquinone-5 as the major respiratory quinone. Collectively, IMCC35004T and IMCC35005T were concluded to represent two novel species of a novel genus within the family Desulfocapsaceae, for which the names Desulfosediminicola ganghwensis gen. nov., sp. nov. (IMCC35004T = KCTC 15826T = NBRC 114003T) and Desulfosediminicola flagellatus sp. nov. (IMCC35005T = KCTC 15827T = NBRC 114004T) are proposed.

Distribution and Sources of Organic Carbon in Surface Intertidal Sediments of the Rudong Coast, Jiangsu Province, China

In this study, total organic carbon (TOC), total nitrogen (TN), and stable carbon isotopes (δ13C) were measured in surface intertidal saltmarsh and bare tidal flat sediments along the Rudong coast. The distribution and sources of organic carbon were examined under different depositional environments based on C/N ratios and a two-terminal mixing model. The results showed that the average TOC content of the vegetated saltmarsh sediments, bare tidal flat areas near vegetation (BF1), and bare tidal flat areas far from vegetation (BF2) were 4.05, 2.72, and 1.22 mg/g, respectively. The mean δ13C value within the vegetated saltmarsh area was −22.37‰, and the C/N ratio was 9.3; the corresponding values in the BF1 area were −23.27‰ and 7.95, respectively; and in the BF2 area, the corresponding values were −21.91‰ and 5.36, respectively. These C/N ratios reflect an increasing marine contribution with distance from the vegetated zone. Combined with the two-terminal mixing model, the organic carbon in the vegetated saltmarsh sediments was dominated by terrestrial sources, while the bare tidal flat sediments were more influenced by marine sources, and the bare tidal flat sediments nearer to the vegetated zone (BF1) were influenced by a combination of vegetation, marine sources, and other terrestrial factors.

Indicator Function of Ragworm (Nereididae) on Sediment Microplastic in Haizhou Bay Intertidal Zone

Sediment samples were collected from nine sites of three sections, in the intertidal zone of Haizhou bay in July 2018. The abundance and characteristics of microplastics in the sediments (and ragworms within the sediments) were then determined to identify the source of microplastics in ragworms, and to explore the effects of ragworms on microplastics in sediment. The average abundance of microplastics in tidal flat sediments was (0.49±0.17) n·g-1, which was at a high level in domestic offshore environmental studies. Among all the microplastics detected, the most common form and color were fiber and black-gray, respectively, and the materials were mainly polyethylene (PE), polyester (PET), and polystyrene (PS). The detection rate of microplastics in ragworm was 77.78%-86.67%, with an average abundance of (6.68±2.21) n·ind-1; the abundance was significantly correlated with individual mass (r=0.42, P=0.002). The microplastic abundance was significantly higher in ragworms with individual mass over 1.5 g than in those with a mass of<0.5 g or 0.5-1 g (F3=141.029, P=0.000). In ragworms, microplastics were dominated by small black or blue fibers, and the main materials were PE and PET. By analyzing the various characteristics of microplastics with a particle size of 0-3 mm, it was found that the abundance of microplastics in sediments was strongly correlated with that in ragworms (r=0.79,P=0.01); the main form (r=0.90, P=0.035) and the material composition (r=0.73, P=0.024) also showed significant correlation between sediments and ragworms. This indicates that ragworms ingest microplastics in the sedimentary environment and exchange the microplastics with the sediments. Therefore, ragworms can be used as an indicator species of microplastic pollution in sediments.

Levels and ecological risk of heavy metals in the surface sediments of tidal flats along the North Jiangsu coast, China

We investigated the contamination levels of nine heavy metals (Mn, Pb, V, Cr, Co, Ni, Cu, Zn, and As) in 153 surface sediment samples collected along five tidal flats on the North Jiangsu coast, China. The spatial distributions of most heavy metals gradually decreased from the northern Sheyang region to the southern Jianggang region, while slightly increasing in the Rudong region. Principal component analysis indicated that Co, Ni, Cu, Zn, and As were mainly derived from the natural environment, V and Cr were mainly derived from human activities. Additionally, Mn and Pb influenced by both natural and human sources. The geo-accumulation index and the contamination factor indicated that heavy metal contamination in the sediments exhibited little to no pollution levels. The potential ecological risk index exhibiting low ecological risks. Meanwhile, the mean probable effect level quotient values indicating slight toxicity. Cr and Ni were the major contributors to toxicity.

Ammonium promoting methane oxidation by stimulating the Type Ia methane-oxidizing bacteria in tidal flat sediments of the Yangtze River estuary

Estuary and coastal environments have essential ecosystem functions in greenhouse gas sinks and removal of nitrogen pollution. Methane-oxidizing bacteria (MOB) and ammonia-oxidizing bacteria (AOB) communities play critical functions in the estuary's tidal flat sediments. Therefore, the effects of ammonium on MOB communities and methane on AOB communities need to be further explained. In this study, microcosm incubations with different contents of ammonium or methane were conducted for a relatively short (24 h) or long (28 days) period with tidal flat sediments from the Yangtze River estuary. Subsequently, the tagged highly degenerate primer PCR and DNA-based stable isotope probing method were employed to demonstrate the effects on MOB and AOB populations. The results indicated that the methane consumption was enhanced with ammonium supplements within 24 h of incubation. Supplement of 2 μmol/g d.w.s (μmol per gram dry weight soil) NH4+ increased the amount of MOB and its proportion to the total bacteria (p < 0.05) for 28 days incubation. The ammonium supplement increased the proportion of Methylomonas and Methylobacter based on the 16S rRNA gene. According to the functional gene analysis, the MOB primarily engaged in methane oxidation include Methylomonas, Methylobacter, Methylomicrobium, and Methylosarcina, which were associated with Type Ia MOB. It suggested that ammonium supplement may promote methane oxidation by stimulating the Type Ia MOB in tidal flat sediments of the Yangtze River estuary. The current research helps understand the effect of ammonium on methane consumption in the estuary and coastal environments.

Submarine groundwater discharge as a significant export of dissolved inorganic carbon from a mangrove tidal creek to Qinglan Bay (Hainan Island, China)

Submarine groundwater discharge (SGD) is an important pathway for the transport of dissolved chemical substances to the ocean. In this study, we performed a time-series measurement of 222Rn, the concentrations and isotopic compositions of the different carbon species isotopes (particulate organic carbon, POC, dissolved organic carbon, DOC, dissolved inorganic carbon, DIC), physico-chemical parameters during a tidal cycle in a mangrove tidal creek without upstream freshwater inputs in northeastern Hainan Island, China. Our results show mangrove detritus provide the major sources of POC and DOC for the mangrove tidal creek water. Organic matter degradation and terrestrial groundwater discharge are two main processes of providing DIC for the pore water of the mangrove tidal flat sediments. A quantitative evaluation indicates that the amount of DIC production from the organic matter degradation process via sulfate reduction accounts for 59.8% of the total pore water DIC addition, while the proportion of DIC derived from terrestrial groundwater discharge is 40.2%. Using 222Rn mass balance model, we quantify the rates of SGD and its associated dissolved carbon: the average SGD rate in the mangrove tidal creek is approximately 165 (σ=68.73) cm d−1, and the SGD-derived DIC and DOC are approximately 107 and 2.18 g C m−2 d−1, respectively. DIC is the dominant form of dissolved carbon export (~98%) from mangroves tidal creek to the adjacent Qinglan Bay. The high DIC loading via SGD potentially represents the mangrove missing carbon, and has significant implications for the coastal ocean carbon budget.

Litoribacterium kuwaitense gen. nov., sp. nov., isolated from a Kuwait tidal flat

A Gram-stain-positive, strictly aerobic, spore-forming, rod-shaped and non-motile bacterium designated strain SIJ1T was obtained from tidal flat sediment collected from the northern shore of Kuwait Bay, northwest of the Arabian Gulf. Strain SIJ1T grew optimally at 30 °C and pH 7–8 in the presence of 6 % (w/v) NaCl. The cell-wall peptidoglycan was based on meso-diaminopimelic acid and an unsaturated menaquinone with seven isoprene units (MK-7) was the predominant respiratory quinone. It contained anteiso-C15 : 0, iso-C16 : 0 and iso-C15 : 0 as the major fatty acids and ribose as the major whole-cell sugar. The polar lipids were diphosphatidylglycerol, phosphatidylglycerol, unidentified phospholipid, an unidentified glycolipid, phosphoglycolipid and an unidentified lipid. Phylogenetic analysis based on 16S rRNA genes revealed that SIJ1T showed a distinct evolutionary lineage within the Firmicutes. The DNA G+C content was 43.1 mol% and the full genome analysis for strain SIJ1T showed that it had a genome size of 3 989 945 bp and contained 4085 predicted protein-encoding genes. The SIJ1T annotated genome showed more stress resistance encoding genes in comparison to its closely related strains. The amino acid identity and average nucleotide identity data for the whole genome proved that strain SIJ1T does indeed represent a novel genus. The strain was distinguishable from the phylogenetically related genera through differences in several phenotypic properties. On the basis of the phenotypic, phylogenetic and genetic data, strain SIJ1T represents a novel genus and species in the family Bacillaceae, for which the name Litoribacterium kuwaitense gen. nov., sp. nov. is proposed. The type strain is SIJ1T (=DSM 28862T=LMG 28316T).