In this work, we present an innovative calibration technique leveraging differentiable programming to enhance energy resolution and reduce the energy scale systematic uncertainty in X-ray spectroscopic experiments. This approach is demonstrated using synthetic data and is applicable in general to various spectroscopic measurements. This method extends the scope of differentiable programming for calibration, employing Kernel Density Estimation (KDE) to achieve a target Probability Density Function (PDF) for a fully differentiable model of the calibration. To assess the effectiveness of the calibration, we conduct a toy simulation replicating the entire detector response chain and compare it with a standard calibration. This ensures a robust and reliable calibration methodology, holding promise for improving energy resolution and providing a more versatile and efficient approach without the need for extensive fine-tuning.