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Articles published on Substrate specificity

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  • New
  • Research Article
  • 10.1107/s2059798325010290
Structure, substrate recognition and therapeutic targeting of the human ADAMTS-5 spacer domain.
  • Jan 1, 2026
  • Acta crystallographica. Section D, Structural biology
  • Mario Milani + 8 more

The ADAMTS (a disintegrin-like and metalloproteinase domain with thrombospondin type 1 motifs) family of secreted metalloproteinases plays essential roles in extracellular matrix remodeling. ADAMTS-5 contributes to cartilage degradation, cleaving proteoglycans such as aggrecan and versican, and being involved in both physiological tissue turnover and pathological processes such as osteoarthritis and atherosclerosis. Although structural insights into its catalytic domain have informed inhibitor development, the role of ancillary domains, particularly the spacer domain, in substrate recognition and specificity remains underexplored. Here, we report the crystal structure of a segment of human ADAMTS-5 encompassing the C-terminal portion of the cysteine-rich domain and the spacer domain (residues 694-876). This structure reveals critical features of the spacer domain, including the hypervariable loops that function as exosites essential for the binding of aggrecan and versican. Our findings provide new structural insights into the molecular determinants of the substrate specificity of ADAMTS-5 and underscore the spacer domain as a promising target for the development of selective inhibitors.

  • New
  • Research Article
  • 10.1016/j.biotechadv.2025.108718
Microbial transport systems of organic sulfur compounds: Diversity and implications for biocatalysis, healthcare, and environmental biotechnology.
  • Jan 1, 2026
  • Biotechnology advances
  • Fakhra Liaqat + 2 more

Microbial transport systems of organic sulfur compounds: Diversity and implications for biocatalysis, healthcare, and environmental biotechnology.

  • New
  • Research Article
  • 10.1016/j.jbc.2025.110979
Phylogenetic and structural analyses reveal Cdc2-like kinases (CLKs) as ancient regulators of thermosensitive splicing.
  • Jan 1, 2026
  • The Journal of biological chemistry
  • Rachel A Ogle + 4 more

Phylogenetic and structural analyses reveal Cdc2-like kinases (CLKs) as ancient regulators of thermosensitive splicing.

  • New
  • Research Article
  • 10.1016/j.saa.2025.126762
A smartphone-assisted dual-mode sensor based on GN-CDs for sensitive and portable detection of α-glucosidase.
  • Jan 1, 2026
  • Spectrochimica acta. Part A, Molecular and biomolecular spectroscopy
  • Enqi Liu + 9 more

A smartphone-assisted dual-mode sensor based on GN-CDs for sensitive and portable detection of α-glucosidase.

  • New
  • Research Article
  • 10.1016/j.ijbiomac.2025.149508
Structural and functional analyses of Pcal_1233, a highly thermoactive glycerate 2-kinase from Pyrobaculum calidifontis.
  • Jan 1, 2026
  • International journal of biological macromolecules
  • Nisar Ahmed Shakir + 3 more

Structural and functional analyses of Pcal_1233, a highly thermoactive glycerate 2-kinase from Pyrobaculum calidifontis.

  • New
  • Research Article
  • 10.1039/d5sc07586f
Sulfur-ligated iron(iv)-imido and iron(iv)-oxo complexes, which one is more reactive?
  • Jan 1, 2026
  • Chemical science
  • Jagnyesh Kumar Satpathy + 6 more

Mononuclear iron(iv)-oxo, iron(iv)-imido and iron(iv)-nitrido complexes are common catalytic cycle intermediates in enzymes, where the metal is typically linked to the protein through cysteinate or histidine sidechains. Enzymatic high-valent iron(iv)-imido and -nitrido intermediates have never been trapped and characterized; hence, there is uncertainty regarding their structure and function. Using biomimetic models, we have synthesized a novel N4S ligated iron(iv)-imido species as a faithful mimic of a corresponding intermediate in nitrogenase. The complex was characterized with a range of techniques, including UV-vis absorption spectroscopy, electrospray ionization mass spectrometry, resonance Raman spectroscopy and XANES and EXAFS methodologies. A comprehensive investigation combining reactivity studies and computational analysis compares the oxidative reactivity and chemical properties of the iron(iv)-imido complex with those of its oxo-analogue. Although the iron(iv)-oxo species is, in general, more reactive than its iron(iv)-tosylimido counterpart, the reverse trend is observed for the oxidation of specific para-substituted thioanisole substrates. Furthermore, an equatorial sulfur group in the ligand framework is seen to enhance the reactivity of thioanisole sulfoxidation. These studies show that high-valent metal-imido groups can be as powerful oxidants as iron(iv)-oxo entities in atom/group transfer reactions.

  • New
  • Research Article
  • 10.1016/j.nbd.2025.107211
Microglial phagoptosis in development, health, and disease.
  • Jan 1, 2026
  • Neurobiology of disease
  • Yuxuan Li + 2 more

Microglial phagoptosis in development, health, and disease.

  • New
  • Research Article
  • 10.1002/bies.70087
Protein Kinase C Regulates Meiosis in Mammalian Oocytes.
  • Jan 1, 2026
  • BioEssays : news and reviews in molecular, cellular and developmental biology
  • Jaroslav Kalous + 2 more

The protein kinase C (PKC) family comprises enzyme kinases that regulate cell survival, metabolism, and proliferation. PKC isotypes (PKCs) phosphorylate specific downstream substrates, thereby controlling critical steps in both mitotic and meiotic cell division. Throughout the cell cycle, PKCs orchestrate essential processes, such as chromosome segregation, recombination, and cell cycle progression. In vertebrates, PKCs play essential roles in oogenesis and the early stages of embryo development. Disruption of PKC signaling in mammalian oocytes can lead to errors in chromosome segregation and induce meiotic arrest. Therefore, investigating PKC function in meiosis is crucial for advancing fundamental biological research and for developing new approaches to infertility treatment.

  • New
  • Research Article
  • 10.1016/j.bbamcr.2025.120056
NRAMP family in plants: Contribution to cadmium accumulation.
  • Jan 1, 2026
  • Biochimica et biophysica acta. Molecular cell research
  • Katarzyna Kozak + 1 more

NRAMP family in plants: Contribution to cadmium accumulation.

  • New
  • Research Article
  • 10.1107/s205979832501023x
The crystal structure of EpHTT, a hydroxycinnamoyl transferase from Echinacea purpurea.
  • Jan 1, 2026
  • Acta crystallographica. Section D, Structural biology
  • Hui Bao + 10 more

Echinacea purpurea hydroxycinnamoyl-CoA:tartaric acid hydroxycinnamoyl transferase (EpHTT) is a cytosolic BAHD acyltransferase that catalyzes the transfer of caffeoyl groups to tartaric acid, a key step in chicoric acid biosynthesis. Understanding the structure of EpHTT is essential to elucidate the molecular basis of substrate recognition and catalytic specificity. Here, we report the crystal structure of apo-form EpHTT at 2.38 Å resolution, revealing a compact, globular architecture typical of the BAHD superfamily. The enzyme adopts a two-domain fold with conserved HXXXD and DFGWG motifs, forming a V-shaped catalytic cleft characteristic of BAHD acyltransferases. Structural comparison with homologous hydroxycinnamoyl transferase enzymes shows high conservation of the overall fold, while EpHTT exhibits unique adaptations that confer specificity for tartaric acid. These results provide a molecular framework for understanding the function and substrate specificity of HTT, offering insights for the metabolic engineering of chicoric acid production.

  • New
  • Research Article
  • 10.1016/j.ijbiomac.2025.149399
Production of polyhydroxyalkanoates by Halomonas sp. HG01, a halophilic bacterium from northern Peru, using various carbon sources: metabolic and genomic analysis.
  • Jan 1, 2026
  • International journal of biological macromolecules
  • César W Guzmán-Moreno + 8 more

Production of polyhydroxyalkanoates by Halomonas sp. HG01, a halophilic bacterium from northern Peru, using various carbon sources: metabolic and genomic analysis.

  • New
  • Research Article
  • 10.1016/j.ijbiomac.2025.149057
Identification and functional characterization of a regioselective O-methyltransferase involved in physcion biosynthesis in Polygonum cuspidatum.
  • Jan 1, 2026
  • International journal of biological macromolecules
  • Tong Zhang + 8 more

Identification and functional characterization of a regioselective O-methyltransferase involved in physcion biosynthesis in Polygonum cuspidatum.

  • New
  • Research Article
  • 10.1016/j.bbalip.2025.159693
Decoding class II PI3K signaling: From membrane identity to human disease.
  • Jan 1, 2026
  • Biochimica et biophysica acta. Molecular and cell biology of lipids
  • Roberta Rubino + 7 more

Decoding class II PI3K signaling: From membrane identity to human disease.

  • New
  • Research Article
  • 10.1016/j.enzmictec.2025.110760
Anti-biofilm efficiency and substrate specificity of recombinantly produced human paraoxonases.
  • Jan 1, 2026
  • Enzyme and microbial technology
  • Manik Goel + 4 more

Anti-biofilm efficiency and substrate specificity of recombinantly produced human paraoxonases.

  • New
  • Research Article
  • 10.1016/j.enzmictec.2025.110755
Identification of a thermostable GH6 family cellulase from chaetomium thermophilum exhibiting high cellobiose and ionic liquid tolerance.
  • Jan 1, 2026
  • Enzyme and microbial technology
  • Pooja + 2 more

Identification of a thermostable GH6 family cellulase from chaetomium thermophilum exhibiting high cellobiose and ionic liquid tolerance.

  • New
  • Research Article
  • 10.1016/j.foodchem.2025.147404
Biochemical characterization of recombinant Aspergillus niger GZUF36 acetylcholinesterase for pesticide monitoring.
  • Jan 1, 2026
  • Food chemistry
  • Shuqi Xing + 7 more

Biochemical characterization of recombinant Aspergillus niger GZUF36 acetylcholinesterase for pesticide monitoring.

  • New
  • Research Article
  • 10.1016/j.biortech.2025.133307
Engineering chimeric polyhydroxyalkanoate synthases for enhanced copolymerization of poly(3-hydroxybutyrate-co-3-hydroxyhexanoate): A promising biotechnological approach.
  • Jan 1, 2026
  • Bioresource technology
  • Hua Tiang Tan + 9 more

Engineering chimeric polyhydroxyalkanoate synthases for enhanced copolymerization of poly(3-hydroxybutyrate-co-3-hydroxyhexanoate): A promising biotechnological approach.

  • New
  • Research Article
  • 10.1016/j.etap.2025.104909
Organic anion transporter 1 (OAT1) is a mechanism for uptake of mercuric-cyanide complexes into proximal tubular cells.
  • Jan 1, 2026
  • Environmental toxicology and pharmacology
  • Ryan Brownlee + 5 more

Organic anion transporter 1 (OAT1) is a mechanism for uptake of mercuric-cyanide complexes into proximal tubular cells.

  • New
  • Research Article
  • 10.1016/j.jinorgbio.2025.113105
How evolution shaped the structure of steroidogenic cytochrome P450 11A.
  • Jan 1, 2026
  • Journal of inorganic biochemistry
  • Brisa Caroline Alves Chagas + 8 more

How evolution shaped the structure of steroidogenic cytochrome P450 11A.

  • New
  • Research Article
  • 10.1016/j.carres.2025.109739
Impact of 6-purine modifications on the ribose substrate selectivity of pyrimidine nucleoside phosphorylase (PyNP) in base exchange reactions.
  • Jan 1, 2026
  • Carbohydrate research
  • Akihiko Hatano + 7 more

Impact of 6-purine modifications on the ribose substrate selectivity of pyrimidine nucleoside phosphorylase (PyNP) in base exchange reactions.

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