In evaluating the impacts of drought and flooding disasters on crop yields, accurately calculating meteorological yield (i.e., detrended yield) is an important procedure. The present work aimed to compare various yield-detrending methods in terms of characterizing the regression relationships between meteorological yield and the intensities of drought and flooding. Taking the middle-and-lower reach of the Yangtze River (MLRYR) as the study region, the intensities of drought and flooding during the growing seasons of four study crops (cotton, oilseed rape, wheat, and maize) were quantified using the standardized precipitation evapotranspiration index. Nine popular yield-detrending methods and the first-difference method were employed to determine meteorological yields. The results indicated that the examined methods consistently identified the cases with very significant yield-reducing impacts of drought and flooding. The first-difference method identified 58 significant regression relationships, outperforming the yield-detrending methods (identifying 39–44 significant regression relationships). The 20-yr moving average and the linear fitting methods performed best at the provincial level, while the cubic smoothing spline and the quadratic polynomial fitting methods performed best at the district level. Based on these best-performing methods, the average method was proposed and exhibited wider applicability and better performance than the individual methods. In terms of meteorological yield losses, cotton was the most affected crop (35% of all districts experienced severe cotton yield loss) and Anhui was the most affected region (with an average crop yield loss of 14.06%). The yield-reducing impact of flooding was significant in 41 districts; in comparison, the impact of drought was significant only in 7 districts. Additionally, oilseed rape was the crop most affected by drought and flooding. These results can provide guidance for assessing agricultural drought and flooding disasters under climate change.
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