Soil Microbial Parameters Research Articles

Effects of sand burial caused by ant nests on soil microbial biomass, basal respiration, and enzyme activity in/under biocrusts in vegetated areas of the Tennger Desert

AbstractSand burial of crusts, caused by ant burrowing, is a common phenomenon in desert landscapes, yet the potential impacts on soil processes are unknown. Three sand burial depths, 3.0–5.0 mm (deep burial), 1.0–1.5 mm (shallow burial), and 0 mm (control) affecting two dominant biocrusts (viz., cyanobacteria‐lichen crusts and moss crusts) sampled in the moist and dry seasons were selected to explore this issue in two vegetation areas of the Tennger Desert. We collected 180 samples from biocrust layers and topsoil to assess soil physicochemical properties, microbial biomass, basal respiration, and enzymes activities. The results showed that sand burial of crusts reduced soil microbial biomass, basal respiration, and enzyme activities, while deep burial caused a substantial decline in these parameters. Sand burial interfered with the biocrusts structure (e.g., rupture and flaking) and properties, subsequently causing soil‐nutrient deprivation and soil microclimate deterioration. These are major mechanisms for decreasing soil microbial biomass, basal respiration, and enzyme activities. Moss crusts had significantly higher levels of the microbial parameters than cyanobacteria‐lichen crusts following sand burial, indicating that biocrusts' tolerance to sand burial was synchronized with their progressive succession. In addition, soil microbial parameters were higher in natural vegetation areas than artificial vegetation areas following sand burial. Such observations suggest that high soil fertility could mitigate the negative effects of sand burial on soil processes. In conclusion, sand burial induces biocrust degradation and further disturbs surface soil processes in arid desert ecosystems.

Switchgrass cropping systems affect soil carbon and nitrogen and microbial diversity and activity on marginal lands

AbstractSwitchgrass (Panicum virgatum L.), as a dedicated bioenergy crop, can provide cellulosic feedstock for biofuel production while improving or maintaining soil quality. However, comprehensive evaluations of how switchgrass cultivation and nitrogen (N) management impact soil and plant parameters remain incomplete. We conducted field trials in three years (2016–2018) at six locations in the North Central Great Lakes Region to evaluate the effects of cropping systems (switchgrass, restored prairie, undisturbed control) and N rates (0, 56 kg N ha−1 year−1) on biomass yield and soil physicochemical, microbial, and enzymatic parameters. Switchgrass cropping system yielded an aboveground biomass 2.9–3.3 times higher than the other two systems (Jayawardena et al., unpublished data) but our study found that this biomass accumulation did not reduce soil dissolved organic C, total dissolved N (TDN), or bacterial diversity. The annual aboveground biomass removal for bioenergy feedstock, however, reduced soil microbial biomass C (MBC) and microbial biomass N (MBN) and bacterial richness in the second and third years; despite this, continuous monocropping of switchgrass improved soil TDN, inorganic N, bacterial diversity, and shoot biomass in the second and/or third years compared with the first year. N fertilization increased aboveground biomass yield by 1.2 times and significantly increased soil TDN, MBN, and the shoot biomass of switchgrass compared with the unfertilized control. Locations with higher C and N contents and lower C:N ratio had higher aboveground biomass, MBC, MBN, and the activity of BG, CBH, and UREA enzymes; by contrast, locations with higher pH had higher soil TDN and activity of NAG and LAP enzymes. Our research demonstrates that switchgrass cultivation could improve or maintain soil N content and N fertilization can increase plant biomass yield. The comprehensive data also can inform future biogeochemical models to successfully implement switchgrass for bioenergy production.

Response of soil microbial community parameters to plastic film mulch: A meta-analysis

Plastic film mulch alters the soil environment and improves crop production. Although the response of aboveground parts of agroecosystems to plastic film mulch has been extensively studied, no studies have investigated the response of the soil microbiome to plastic film mulch and its effect on crop yield. Here, we performed a meta-analysis of 536 observations to elucidate the response of the soil microbial community to plastic film mulch. Plastic film mulch significantly increased soil microbial alpha-diversity (Shannon: +0.043, 95% CI: +0.022 to + 0.064; richness: +0.037, 95% CI: +0.007 to + 0.067), abundance (+0.104, 95% CI: +0.070 to + 0.139), and eco-functionality (+0.129, 95% CI: +0.087 to + 0.170). In neutral pH soil and field combined plastic film mulch with ridge–furrow tillage, plastic film mulch had a significant impact on microbial richness. Microbial abundance increased significantly when chemical fertilizer was used, but not when organic fertilizer was used. The effect of low-level nitrogen on N acquisition enzyme actives is greater than that of medium and high nitrogen input. Thick film mulch produced a larger positive response in microbial abundance, C acquisition, and oxidative enzyme activities than thin film mulch. Changes in microbial functionality were decoupled with diversity, while in tandem with its abundance and community structure. The increases in microbial C acquisition, N acquisition, and oxidative enzyme activities were significantly linked to yield. Our findings highlight the beneficial effects of plastic film mulch on the soil microbial community and have further implications for the development of soil health-friendly agricultural management.

Perennial cereal grain cultivation: Implication on soil organic matter and related soil microbial parameters

Novel perennial grains in agriculture have the potential of providing soil ecosystem services and boosting plant-soil microbial relationships via increasing soil organic matter (SOM). Hence, we evaluated the implication of perennial intermediate wheatgrass agroecosystems (+/− alfalfa intercrop) in contrast to organic and conventional rotation systems on SOM and related soil microbial parameters. Soil samples were obtained from perennial intermediate wheatgrass (IWG), sole (IWG-SC) or intercropped with alfalfa (IWG-IC), as well as organic (ORG-A) and conventional (CON-A) rotation systems of annual wheat. Soil samples were taken in two depths (0–30 cm and 30–60 cm) and analyzed for total and fractionated soil organic C (SOC), microbial biomass C and N (MBC and MBN), basal microbial respiration (Rb), potential enzyme activities related to C and N cycling (Cellobiohydrolase (CBH), Leucine-aminopeptidase (LAP)), and abundance of functional genes related to N cycling (amoA, nifH) and 16S rRNA genes. Despite the lack of fertilization in the IWG systems, SOC concentration and the amount of C in the particulate organic matter were higher in the 30–60 cm depth of IWG systems than ORG-A and CON-A. Higher MBN and LAP activities were observed in the 0–30 cm depth of ORG-A than both IWG and CON-A. Mass specific CBH activities and metabolic quotient qCO2 were lower in the 30–60 cm depth of IWG systems, implying reduced C losses and high C use efficiency in these systems. Similarly, we observed higher amounts of 16S rRNA in the 30–60 cm depth of IWGs than ORG-A and CON-A. Hence, IWG systems increased SOC and microbial biomass and activities in the 30–60 cm depth than ORG-A and CON-A. However, the more diverse IWG (+ alfalfa intercrop) did not increase microbial biomass and activities than IWG monoculture. Our study provides a reflection of how perennial grain agroecosystems, in conjunction with organic rotation systems, induce a positive influence on SOC and microbial activities than CON-A. It further suggested that perennial grain cultivation goes beyond the reach of organic farming dominated by annual crops to induce SOC and support relevant soil microbial functions in subsoils.

Comparison of soil characteristics related to C and N processes in Eastern Hungarian and Central Japanese soils under different land use and nutrient supply

ABSTRACT This comparative investigation aimed to evaluate controlling factors for the changes of chemical and microbial properties in soils taken from chemical fertilizer experiments carried out mainly in Chernozem and Andosol in Hungary and Japan, respectively. The plant available nutrient content of the soil, the stock of C and N and the soil microbial parameters of the carbon and nitrogen cycles were examined under different land-use and vegetation. In the Japanese soils, there was about 2–3 times higher organic C content than in Hungarian soils. The average CO2-production was about 1.5 times higher in Hungary soils than Japanese soils, and significantly increased (9–37%) in the fertilized treatments compared to control in all Hungarian long-term experiments. Regarding the Hungarian soils, the NPK-fertilization especially increased the nitrate and phosphorus content of soils, among the microbial parameters of the CO2-production, MBC, MBN, net nitrification, saccharase and urease activities – in most cases significantly increased – among the six microbial examined parameters. With reference to Japanese soils, the nitrogen fertilization especially increased the nitrate and phosphorus content of soils and had the highest effect on the microbiological parameters in the forest soil, where the MBC, MBN, net nitrification, saccharase and urease activities increased significantly. Only the net nitrification increased significantly in the fertilized treatments in the all Numata experiments, and generally 10–100 times higher values were found in the Japanese soils than in the Hungarian ones. The microbial activity decreased according to land use in the following order: maize>forest>grassland in Hungary soils, and forest>grassland>apple orchards in Japanese soils. These results confirm that climate conditions and human activity have important impacts on the C and N cycles of the soil–plant–atmosphere system. Based on our results, it appears that land-use and chemical fertilization resulted in a larger change in the stock of organic matter and soil microbiological processes in the Hungarian long-term experiments compared to the Japanese experiments.

Plant genotype controls wetland soil microbial functioning in response to sea-level rise

Abstract. Climate change can strongly alter soil microbial functioning via plant–microbe interactions, often with important consequences for ecosystem carbon and nutrient cycling. Given the high degree of intraspecific trait variability in plants, it has been hypothesized that genetic shifts within plant species yield a large potential to control the response of plant–microbe interactions to climate change. Here we examined if sea-level rise and plant genotype interact to affect soil microbial communities in an experimental coastal wetland system, using two known genotypes of the dominant salt-marsh grass Elymus athericus characterized by differences in their sensitivity to flooding stress – i.e., a tolerant genotype from low-marsh environments and an intolerant genotype from high-marsh environments. Plants were exposed to a large range of flooding frequencies in a factorial mesocosm experiment, and soil microbial activity parameters (exo-enzyme activity and litter breakdown) and microbial community structure were assessed. Plant genotype mediated the effect of flooding on soil microbial community structure and determined the presence of flooding effects on exo-enzyme activities and belowground litter breakdown. Larger variability in microbial community structure, enzyme activities, and litter breakdown in soils planted with the intolerant plant genotype supported our general hypothesis that effects of climate change on soil microbial activity and community structure can depend on plant intraspecific genetic variation. In conclusion, our data suggest that adaptive genetic variation in plants could suppress or facilitate the effects of sea-level rise on soil microbial communities. If this finding applies more generally to coastal wetlands, it yields important implications for our understanding of ecosystem–climate feedbacks in the coastal zone.

BIORECLAMATORY STUDIES ON SALT AFFECTED SOIL BY USING CYANOBACTERIAL BIOFERTILIZERS

In the present investigation, three strains of cyanobacteria isolated from agricultural fields near to salt mine were used as biofertilizer individually and in consortia. Farm yard manure was also used along with cyanobacterial biofertilizers to see the ameliorative effect on soil physical, chemical and biological properties. The algalization experiment was conducted in pots in the glass house of the department for 240 days. There was an improvement in carbon, nitrogen, phosphate, potassium, magnesium, calcium, zinc, iron, copper and manganese with biofertilizers treatment whereas sodium ion, EC and pH were found to be decreased. Soil microbial activities and plant growth parameters were found to be improved. Thus, the cyanobacterial species show promise in effective exploitation for phytoremediation and improved productivity of saline soils.

Contrasting Effects of Forest Type and Stand Age on Soil Microbial Activities: An Analysis of Local Scale Variability.

Simple SummaryThe potentially important role of forests in climate change mitigation suggests a strong need for a more detailed understanding of these ecosystems. Besides climatic conditions, diverse forest vegetation creates varied conditions for the activity of soil microorganisms, and particular attention should be focused on a comprehensive study on the influence of different forest types on microbial activities. We conducted an experiment on six different forest soils (two coniferous, two deciduous, and two mixed sites comprising trees of different ages) collected from the same region (Lublin Upland, Poland) to assess the relationship between forest type and seasonal changes in microbial parameters. The annual mean values of the soil microbial indicators suggest that the mature deciduous stand was the most sustainable in microbial activities among the forest soils investigated. The diversity of the forest environment and the multifactorial dependence of the microbiological activity of forest soils necessitates further research in this field, especially using the same soil types. An understanding of forest ecosystem functioning can also be useful for forest management.Understanding the functioning of different forest ecosystems is important due to their key role in strategies for climate change mitigation, especially through soil C sequestration. In controlled laboratory conditions, we conducted a preliminary study on six different forest soils (two coniferous, two deciduous, and two mixed sites comprising trees of different ages) collected from the same region. The aim was to explore any differences and assess seasonal changes in soil microbial parameters (basal respiration BR, microbial biomass Cmic, metabolic quotient qCO2, dehydrogenase activity DHA, and Cmic:Corg ratio). Indicator- and forest-specific seasonality was assessed. In addition to litter input, soil parameters (pH, nutrient content, texture and moisture) strongly regulated the analyzed microbial indicators. PCA analysis indicated similarity between mature mixed and deciduous forests. Among annual mean values, high Cmic and DHA with simultaneously low qCO2 suggest that the mature deciduous stand was the most sustainable in microbial activities among the investigated forest soils. Research on the interrelationship between soil parameters and forest types with different tree ages needs to be continued and extended to analyze a greater number of forest and soil types.

Gone and forgotten: facilitative effects of intercropping combinations did not carry over to affect barley performance in a follow-up crop rotation

AimIntercropping often leads to improved productivity of individual species compared to monocultures. We have practically little knowledge of facilitation effects in different intercropping systems and their importance in creating soil legacies that can indirectly affect the succeeding crop in a crop rotation through plant-soil feedback (PSF) effects.MethodsTo test this, we used a two-phased field experiment where we combined intercropping and crop rotation. During intercropping, we grew maize, faba bean, and lupine in monocultures or two-species crop combinations. The following season, we grew winter barley on the soil previously used for intercropping to test PSF effects under field conditions.ResultsWe found evidence for facilitative effects on aboveground biomass production that were species-specific with faba bean and maize biomass benefitting when intercropped compared to their expected biomasses in monocultures. Lupine, in contrast, performed best in monocultures. After the intercropping phase, total soil mineral nitrogen was higher in legume monocultures creating soil legacies but this did not affect soil microbial parameters and barley biomass production in the follow-up rotation phase.ConclusionsWe found support for species-specific positive and negative interactions in intercropping. Our results also demonstrated that soil legacies play no significant role under moderately high nutrient environments.

Tree species mixing affects soil microbial functioning indirectly via root and litter traits and soil parameters in European forests

Abstract Plant community composition influences soil microbial communities through plant trait variations that lead to changes in nutrient and organic carbon inputs into the soil by root exudates and plant litter. Although plant litter and living roots are known to influence microbial functioning independently, their relative effects are rarely measured simultaneously in naturally occurring plant communities. Here, we sought to evaluate how forest floor litter and absorptive roots affect broad functions of soil microbial communities, and how this may be influenced by tree species mixing. To do so, forest floor litter, absorptive roots and soil were sampled from mono‐specific and three‐species mixed stands in four mature, natural forest ecosystems across Europe. The direct effects of tree species mixing, its indirect effects via litter and root traits, and the effects of soil parameters on microbial biomass, catabolic activity and diversity, and denitrification were analysed. Results did not show direct tree mixture effects on the soil microbial parameters we measured but did suggest indirect influences via tree mixture effects on traits of above‐ground litter and absorptive roots and soil parameters. Mixed forests composed of any three tree species modified soil microbial functioning by influencing nutrient availability in forest floor litter and root resource acquisition. Tree mixing also modified soil microbial functioning and catabolic diversity by influencing soil fertility and physicochemical properties. Our findings suggest an indirect but present influence of tree species mixing on the activity of heterotrophic soil microbial communities across four different forest ecosystems ranging from Mediterranean to boreal forests. Our study contributes to a better mechanistic understanding of mixed tree species effects on soil microbial functioning via the modification of forest floor litter properties and traits of absorptive roots represented by the tree community beyond simple species number consideration, and potentially via soil properties. A free Plain Language Summary can be found within the Supporting Information of this article.

Analyses of genetic variability and genotype x cyanobacteria interactions in biofortified maize (Zea mays L.) for their responses to plant growth and physiological attributes

Microbe-mediated enrichment of crops has emerged as an environment-friendly intervention to tackle the problems of eroding soil fertility and malnutrition globally. The responses of a set of ten biofortified maize genotypes to three cyanobacterial inoculants (cyanobacterial consortium BF1-4, Anabaena sp.–Trichoderma sp. biofilm-An-Tr and Anabaena sp.+ Providencia sp. -CR1 + PR3) were evaluated over a period of two years. Significant genetic variation existed among the maize inbreds for all soil microbial parameters, soil macronutrients (N and P) and micronutrients (Mn and Zn), besides physiological and nutritional quality traits. Genotype x Inoculants interaction was more significant for soil glomalin (32 %), organic carbon (26 %), soil polysaccharides (20 %) and soil available N (18 %). Genotype x inoculants x environment (years) interactions significantly influenced available Zn (36 %), organic carbon (31 %), glomalin (30 %), available N (20 %) and polysaccharides (20 %). Promising genotype-inoculant combinations of PMI-Q2+ BF1-4 or An-Tr, PMI-PV2+BF1-4 or CR1 + PR3, HP-467-13 + BF 1-4 or An-Tr were identified, which can be evaluated across agro-ecologies. It was concluded that cyanobacterial inoculation can lead to N savings, improved soil fertility and enhanced crop vigor in maize.

Is sewage sludge a valuable fertilizer? A soil microbiome and resistome study under field conditions

PurposeSewage sludge land application is strongly recommended to improve soil quality and fertility despite the presence of pollutants, pathogens and antibiotic resistance genes. This study aimed to assess the fertilization value of low and recommended by law sewage sludge dose (15 t ha−1).Materials and methodsIn a 540-day field study, the effect of sewage sludge on the soil physicochemical and microbial parameters, emphasising antibiotic and metal resistance spread, was investigated.ResultsIn contrast to expectations, sewage sludge did not improve the organic matter, nutrient content and microbial activity in the soil; therefore, the fertilization effect was not achieved. Moreover, an increase in the bioavailable Cd, Ni and Cu content was observed. Canonical correspondence analysis revealed that these increases mainly explain the changes in the soil microbial community. Sixteen resistance genes and four integron classes were detected in both the total DNA and on plasmids isolated from sewage sludge. Obtained plasmids confer β-lactam resistance or extreme resistance to tetracycline (> 256 μg mL−1). Two antibiotic resistance genes (blaNPS-2, tetA) were transferred into the fertilized soil and detected up to 6 months after the fertilization.ConclusionOur results provide evidence that the regulated dose of sewage sludge, even when characterized by low total metal content, may affect soil microbial microbiome and resistome. Therefore, these findings provide critical data that have public health implications, which may raise concerns about the suitability of applying sewage sludge to the soil even at the low regulated dose.

Flood Pulse Irrigation of Meadows Shapes Soil Chemical and Microbial Parameters More Than Mineral Fertilization

While mineral fertilization increases agricultural yields, it also bears the risk of contaminating non-target ecosystems and negatively affecting soil chemical parameters and microbial communities. This calls for alternative and more sustainable agricultural practices that reduce the use of fertilizers. Flood pulse irrigation could be an alternative to mineral fertilization of hay meadows, since it increases the yield with little or no application of fertilizer. However, the positive and negative implications of flood pulse irrigation on soil chemical parameters and particularly soil microbial communities are still largely unknown. In this study, we assessed shifts in soil microbial communities (SMC) as a response to changes in soil chemical parameters after flood pulse irrigation and/or fertilization of meadows. We determined soil chemical (Corg, Ntot, water extractable N, P, K, pH) and microbial (phospholipid-derived fatty acids, PLFA) parameters of 12 meadows in a 2 × 2 factorial design, comprising flood pulse irrigation and fertilization. Corg, Ntot, and water content as well as microbial biomass were higher in flood-irrigated than in non-flooded soils. Soil microbial biomass positively correlated with Corg, Ntot, and water extractable N. Gram-negative bacteria significantly increased, whereas the fungi/bacteria ratio significantly decreased in flood-irrigated soils compared to non-flooded soils. Arbuscular mycorrhizal fungi were positively correlated with soil pH. Flood pulse irrigation seemed to promote the build-up of a larger soil carbon and nitrogen pool as well as higher water content and microbial biomass. By this, it potentially mitigated negative mineral fertilization effects such as changed soil pH and reduced carbon use efficiency. We conclude that flood pulse irrigation may represent a sustainable alternative to mineral fertilization.

Soil microbial biomass and enzyme kinetics for the assessment of temporal diversification in agroecosystems

In agroecosystems, temporal diversification creates a sequence of short-lived habitats through time. Crop species as well as the diversity of crops grown in sequence might affect soil biodiversity and nutrient cycling processes. In the present study, we focused on a long-term crop rotation established in 2006 in Lower Saxony, Germany on a Luvisol. Winter wheat (WW) and silage maize (SM) were grown in continuous cultivation as well as in rotations. WW rotations span up to six years (including silage maize, sugar beet, winter rape and/or grain pea). Over two years, microbial biomass carbon (MBC) as well as kinetics (Michaelis-Menten Vmax and Km) of extracellular hydrolytic enzymes (β-glucosidase (BG), N-acetyl-β-glucosaminidase (NAG) and acid phosphomonoesterase (AP)) were measured in topsoil (0–10 cm depth) three times during the growing season. Continuous wheat increased soil microbial parameters compared to continuous maize as indicated by the higher microbial biomass to soil organic carbon ratio and higher potential enzymes activities involved in the C- and N-cycles (Vmax of BG and NAG). The efficiency of these enzymes was lowest in continuous maize (highest Km of BG and NAG). Maize and sugar beet as preceding crop of WW significantly decreased MBC in the 1st year but not in the 2nd year WW. Sugar beet decreased BG activity as well as its substrate affinity (increased Km). The effect of sugar beet on MBC and enzyme kinetics depended on the preceding crop and lessened with grain pea as the preceding crop. Soil microorganisms in the wheat phase benefited from winter rape as the preceding crop, shown by an increased biomass and efficiency to turn over chitin and peptidoglycan (decreased Km of NAG). Differences between cultivated crops, cropping history and fluctuations within the year in soil microbial biomass and enzyme kinetics are shown.

Assessment of soil microbial and enzyme activity in the rhizosphere zone under different land use/cover of a semiarid region, India

BackgroundLand use/cover and management practices are widely known to influence soil organic matter (SOM) quality and quantity. The present study investigated the effect of different land use, i.e., forests viz. mixed forest cover (MFC), Prosopis juliflora (Sw.) DC-dominated forest cover (PFC), and cultivated sites viz. agriculture field (AF), vegetable field (VF), respectively, on soil parameter, microbial activity, and enzymes involved in soil nutrient cycle in a semiarid region of India.ResultsThe results showed a significant reduction (P < 0.05) in soil carbon (SC), soil nitrogen (SN) content (~ 30–80%) and consequently the soil microbial biomass carbon (SMBC) (~ 70–80%), soil basal respiration (SBR), soil substrate-induced respiration (SSIR), and soil enzyme activities (β-glucosidase, acid phosphatase, and dehydrogenase) under cultivated sites in comparison with forest sites. Pearson’s correlation showed that a positive correlation of SC with SMBC, SBR, SSIR (P < 0.01), and enzymatic activities (i.e., β-glucosidase, dehydrogenase) (P < 0.05) may imply the critical role of SC in regulating microbial and enzymatic activity. Also, a positive correlation of soil moisture with urease activity (P < 0.01) was found suggesting it as a significant abiotic factor for soil biological functions. Additionally, based on the PCA analysis, we observed the clustering of SMBC/SC ratio and qCO2 nearby AF.ConclusionOur study suggests that soil microbial parameters (SMBC, SBR, SSIR, SMBC/SC, qCO2) and enzyme activity are key indicators of soil health and fertility. Land use/cover alters the SOM content and soil microbial functions. The management strategies focusing on the conservation of natural forest and minimizing the land disturbances will be effective in preventing soil carbon flux as CO2 and maintaining the SC stock.

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Large-scale importance of microbial carbon use efficiency and necromass to soil organic carbon.

Optimal methods for incorporating soil microbial mechanisms of carbon (C) cycling into Earth system models (ESMs) are still under debate. Specifically, whether soil microbial physiology parameters and residual materials are important to soil organic C (SOC) content is still unclear. Here, we explored the effects of biotic and abiotic factors on SOC content based on a survey of soils from 16 locations along a ~4000km forest transect in eastern China, spanning a wide range of climate, soil conditions, and microbial communities. We found that SOC was highly correlated with soil microbial biomass C (MBC) and amino sugar (AS) concentration, an index of microbial necromass. Microbial C use efficiency (CUE) was significantly related to the variations in SOC along this national-scale transect. Furthermore, the effect of climatic and edaphic factors on SOC was mainly via their regulation on microbial physiological properties (CUE and MBC). We also found that regression models on explanation of SOC variations with microbial physiological parameters and AS performed better than the models without them. Our results provide the empirical linkages among climate, microbial characteristics, and SOC content at large scale and confirm the necessity of incorporating microbial biomass and necromass pools in ESMs under global change scenarios.

A two-year field study of nickel-agromining using Odontarrhena chalcidica co-cropped with a legume on an ultramafic soil: temporal variation in plant biomass, nickel yields and taxonomic and bacterial functional diversity

Agromining aims to improve the fertility of naturally metal-rich soils by extracting metals, such as nickel (Ni), using hyperaccumulator plants. Ultramafic soils are characterized by low fertility levels, limiting hyperaccumulator yields. Here, we characterize the potential benefits for phytoextraction efficiency of co-cropping a Ni-hyperaccumulator (Odontarrhena chalcidica) and a legume (Vicia sativa), following a two-year field experiment. A two-year field experiment was set up in an ultramafic zone in North-West Spain. Three treatments were tested: co-cropping, fertilized control with ammonium nitrate and non-fertilized control. Over the 2 years, co-cropping increased O. chalcidica’s biomass by 24% and 403% compared to fertilized and non-fertilized controls, respectively. Moreover, co-cropping had higher Ni-yields for both years, while fertilization had a negative effect on soil parameters. A non-metric multidimensional scaling analysis of the operational taxonomic units showed that the soil bacterial diversity changed over time. Soil exchangeable Ni and organic carbon influenced the phyla’s relative abundance. Metabolic genes were dominant and their relative abundances increased over time with co-cropping. Pluriannual co-cropping of a hyperaccumulator with a legume improved both hyperaccumulator and Ni yields. In contrast, mineral fertilization was shown to be detrimental to some soil microbial parameters. Thus, ameliorating agromining by replacing mineral fertilizers would combine an eco-efficient strategy with sustainable metal recovery.

Invasive plant Reynoutria japonica produces large amounts of phenolic compounds and reduces the biomass but not activity of soil microbial communities

Reynoutria japonica is one of the most invasive plant species. Its success in new habitats may be associated with the release of secondary metabolites. The aim of this study was to compare phenolic concentrations in plant biomass and soils between plots with R. japonica and resident plants (control), and determine the effects of these compounds on soil microbial communities. Samples of plant shoots and rhizomes/roots, and soil were collected from 25 paired plots in fallow and riparian habitats in Poland. We measured concentrations of total phenolics, condensed tannins, catechin, chlorogenic acid, emodin, epicatechin, hyperoside, physcion, piceatannol, polydatin, procyanidin B3, quercetin, resveratrol, and resveratroloside. Soil microbial parameters were represented by acid and alkaline phosphomonoesterases, β-glucosidase, phenoloxidase, and peroxidase activity, culturable bacteria activity and functional diversity measured with Biolog Ecoplates, and microbial biomass and community structure measured with phospholipid fatty acid (PLFA) analysis. We found that concentrations of total phenolics and condensed tannins were very high in R. japonica leaves and rhizomes/roots, and concentrations of most phenolic compounds were very high in R. japonica rhizomes/roots when compared to resident plant species. Concentrations of most phenolics in mineral soil did not differ between R. japonica and control plots; the only exceptions were catechin and resveratrol which were higher and lower, respectively, under the invader. Total microbial and bacterial (G+, G–) biomass was decreased by approx. 30% and fungal biomass by approx. 25% in invaded soils in comparison to control. Among soil functional microbial parameters, only peroxidase activity and functional diversity differed between R. japonica and resident plant plots; peroxidase activity was higher, while functional diversity was lower in soil under R. japonica. The negative effects of R. japonica on microbial biomass may be related to catechin or its polymers (proanthocyanidins) or to other phenolics contained in high concentrations in R. japonica rhizomes.

Differences in phenolics produced by invasive Quercus rubra and native plant communities induced changes in soil microbial properties and enzymatic activity

Invasive trees can alter soil properties and ecosystem functioning by producing phenolic compounds. Phenolics can influence carbon and nitrogen availability as well as enzymatic activity or act as signaling molecules. In plant-microorganism interactions, species-specific phenolics can be the source of food or toxicity. They may have antimicrobial, stimulatory or both (ambiguous) properties and thus affect soil microbial properties, enzymatic activity, and plant-soil feedbacks differently. We hypothesized that phenolic compounds with antimicrobial properties produced by invasive Quercus rubra would reduce soil microbial biomass and enzymatic activity, and alter microbial community structure. We expected these changes to be most pronounced in the soil organic horizon as they are driven by litter chemistry. We tested changes, potentially associated with the concentrations of 12 phenolic compounds in Q. rubra litter and soil, in microbial properties (respiration rate, bacterial and fungal biomass), enzymatic activity, and microbial community structure in organic and mineral soil horizons as well as in arbuscular mycorrhizal fungi (AMF) spore number and species richness in mineral soil horizon. We found that Q. rubra reduced several soil parameters, namely respiration rate, phosphatase activity, total microbial biomass, bacterial (both G + and G–) biomass, and 16:1ω5 NLFA AMF storage lipid marker as well as changed microbial community structure, which supports our hypothesis that the phenolics produced by Q. rubra have mostly toxic effect on native soil communities. However, Q. rubra did not affect arylsulfatase and urease activity, saprotrophic fungi population, and the number of AMF spores and species. The changes in soil microbial properties and enzymatic activity may be related to high amounts of ellagic acid, ferulic acid, phloridzin, and syringic acid provided with newly shed Q. rubra litter to the soil surface. Some phenolics found in soil, i.e., phloridzin and (–)-epicatechin, correlated negatively, while others, i.e., quercetin and chlorogenic acid, correlated positively with soil microbial parameters and/or enzymatic activity, which suggest either antimicrobial or stimulatory properties of these compounds. Our study demonstrated that invasive Q. rubra has multiple potential effects on soil microbial communities, which can mediate plant-soil feedbacks. Future research should address the long-term consequences of these changes for forest ecosystems and the fitness of native flora.