Size Of Soil Microbial Community Research Articles

Organic farming enhances soil microbial abundance and activity-A meta-analysis and meta-regression.

Population growth and climate change challenge our food and farming systems and provide arguments for an increased intensification of agriculture. A promising option is eco-functional intensification through organic farming, an approach based on using and enhancing internal natural resources and processes to secure and improve agricultural productivity, while minimizing negative environmental impacts. In this concept an active soil microbiota plays an important role for various soil based ecosystem services such as nutrient cycling, erosion control and pest and disease regulation. Several studies have reported a positive effect of organic farming on soil health and quality including microbial community traits. However, so far no systematic quantification of whether organic farming systems comprise larger and more active soil microbial communities compared to conventional farming systems was performed on a global scale. Therefore, we conducted a meta-analysis on current literature to quantify possible differences in key indicators for soil microbial abundance and activity in organic and conventional cropping systems. All together we integrated data from 56 mainly peer-reviewed papers into our analysis, including 149 pairwise comparisons originating from different climatic zones and experimental duration ranging from 3 to more than 100 years. Overall, we found that organic systems had 32% to 84% greater microbial biomass carbon, microbial biomass nitrogen, total phospholipid fatty-acids, and dehydrogenase, urease and protease activities than conventional systems. Exclusively the metabolic quotient as an indicator for stresses on microbial communities remained unaffected by the farming systems. Categorical subgroup analysis revealed that crop rotation, the inclusion of legumes in the crop rotation and organic inputs are important farming practices affecting soil microbial community size and activity. Furthermore, we show that differences in microbial size and activity between organic and conventional farming systems vary as a function of land use (arable, orchards, and grassland), plant life cycle (annual and perennial) and climatic zone. In summary, this study shows that overall organic farming enhances total microbial abundance and activity in agricultural soils on a global scale.

Soil biochemical responses to nitrogen addition in a secondary evergreen broad-leaved forest ecosystem

In order to investigate the effects of N deposition on soil biochemistry in secondary forests, one N addition experiment was conducted in a secondary evergreen broad-leaved forest in the western edge of Sichuan Basin, with the highest level of background N deposition (about 95 kg N ha−1 yr−1) in China. Three N treatment levels (+0, +50, +150 kg N ha−1 yr−1) were monthly added to soil surface in this forest beginning in April 2013. Soil biochemistry and root biomass of the 0–10 cm soil horizon were measured from May 2014 to April 2015. Soil respiration was measured for two years (September 2013 to August 2015). It was showed that N additions were correlated to significantly lower soil pH, microbial biomass C (MBC) concentration, MBC/microbial biomass N (MBN) ratio, root biomass, and soil respiration rate, and significantly higher concentrations of ammonium (NH4+) and nitrate (NO3−). These results indicate that N additions had a significant effect on the size of soil microbial community. In addition, soil C storage may potentially increase due to the dropped soil C release under N addition.

Cover cropping frequency is the main driver of soil microbial changes during six years of organic vegetable production

Soil microbes play a key role in soil health, and understanding the functional role of this living component of soil organic matter is critical to developing sustainable systems in major vegetable production regions like Salinas, California. Soil microbial community size and composition was evaluated after six years of commercial-scale production in five organic vegetable systems in a long-term systems experiment. All systems produced lettuce, and spinach or broccoli annually, and differed in yard-waste compost inputs (none or 15.2 Mg ha−1 year−1), winter cover crop frequency (annually or every 4th year), and cover crop type (legume-rye, mustard, or rye). The same levels of irrigation, and supplemental fertilizer were applied to all systems. Cumulative organic matter inputs from compost and cover crop shoots over the six years ranged from 7.4 to 136.8 Mg ha−1 and caused differences in microbial biomass C (MBC) and N (MBN), and soil organic C (SOC). MBC increased by 40 mg C kg−1 soil with compost and infrequent cover cropping, and to levels that were relatively high (200–250 mg C kg−1 soil) for a loamy sand soil in systems with annual cover cropping. Changes in SOC between systems were caused primarily by compost while changes in MBC and MBN were more related to cover cropping frequency. Fatty acid methyl ester (FAME) analysis revealed differences in microbial community structure that were consistent with differences between systems in MBC and MBN. Across systems, the ratio of fungal: bacterial FAME indicators decreased over time while indicators of invertebrates, and gram positive bacteria increased. High-throughput sequencing revealed relatively few differences in bacterial phyla between systems, but the increase in cropping intensity across all systems changed the relative abundance of some bacterial phyla (Bacteroidetes, Deinococcus-Thermus) and genera (Flavobacterium, Nocardioidetes). Cover crop type and frequency also influenced the abundance of two bacterial genera (Pseudomonas, Agromyces). These results provide evidence that carbon (C) inputs from frequent cover cropping are the primary driver of changes in the soil food web and soil health in high-input, tillage-intensive organic vegetable production systems.

Microbial composition and diversity are associated with plant performance: a case study on long-term fertilization effect on wheat growth in an Ultisol.

The association between microbial communities and plant growth in long-term fertilization system has not been fully studied. In the present study, impacts of long-term fertilization have been determined on the size and activity of soil microbial communities and wheat performance in a red soil (Ultisol) collected from Qiyang Experimental Station, China. For this, different microbial communities originating from long-term fertilized pig manure (M), mineral fertilizer (NPK), pig manure plus mineral fertilizer (MNPK), and no fertilizer (CK) were used as inocula for the Ultisol tested. Changes in total bacterial and fungal community composition and structures using Ion Torrent sequencing were determined. The results show that the biomass of wheat was significantly higher in both sterilized soil inoculated with NPK (SNPK) and sterilized soil inoculated with MNPK (SMNPK) treatments than in other treatments (P<0.05). The activities of β-1,4-N-acetylglucosaminidase (NAG) and cellobiohydrolase (CBH) were significantly correlated with wheat biomass. Among the microbial communities, the largest Ascomycota phylum in soils was negatively correlated with β-1,4-glucosidase (βG) (P<0.05). The phylum Basidiomycota was negatively correlated with plant biomass (PB) and tillers per plant (TI) (P<0.05). Nonmetric multidimensional scaling analysis shows that fungal community was strongly correlated with long-term fertilization strategy, while the bacterial community was strongly correlated with β-1,4-N-acetylglucosaminidase activity. According to the Mantel test, the growth of wheat was affected by fungal community. Taken together, microbial composition and diversity in soils could be a good player in predicting soil fertility and consequently plant growth.

Soil microbial community responses to long-term land use intensification in subtropical grazing lands

Land use intensification often results in modification in plant cover and nutrient inputs with subsequent potential effects on composition and structure of soil microbial community and fractions. The objective of this study was to understand the long-term (>22yr) impacts of land use intensification (introduction of productive vegetation type, greater N fertilizer input and stocking rate) on soil microbial community composition and activity in Florida grazing lands. Experimental sites consisted of a gradient of management intensities ranging from native rangeland (lowest), silvopasture (intermediate), to sown pasture (highest). Increasing management intensity from native rangeland to sown promoted microbial biomass and activity. At the 0–10cm, soil microbial biomass carbon (MBC) concentration was greater in sown pasture (334mgkg−1) compared to silvopasture and native rangeland (193 and 232mgkg−1, respectively). Similarly, potentially mineralizable C (PMC) increased in response to grazing land intensification (1.2mg CO2-C kg−1d−1 for sown pastures vs. 0.5 and 0.6mg CO2-C kg−1d−1 for native rangeland and silvopasture, respectively). Sown pastures exhibited the greatest levels of β-glucosidase activity (203nmolg−1 soil h.−1) and phospholipid fatty acid (PLFA) biomass (222μmolkg−1 soil) compared to native rangeland and silvopasture. Results also demonstrated greater relative abundance of bacteria and less fungi as land use intensification increased from native rangeland to silvopasture or sown pasture. Our study indicated that long-term land use intensification affected the size, activity, and composition of soil microbial community in subtropical grazing lands.

Biochar stimulates the decomposition of simple organic matter and suppresses the decomposition of complex organic matter in a sandy loam soil

AbstractIncorporating crop residues and biochar has received increasing attention as tools to mitigate atmospheric carbon dioxide (CO2) emissions and promote soil carbon (C) sequestration. However, direct comparisons between biochar, torrefied biomass, and straw on both labile and recalcitrant soil organic matter (SOM) remain poorly understood. In this study, we explored the impact of biochars produced at different temperatures and torrefied biomass on the simple C substrates (glucose, amino acids), plant residues (Lolium perenne L.), and native SOM breakdown in soil using a 14C labeling approach. Torrefied biomass and biochars produced from wheat straw at four contrasting pyrolysis temperatures (250, 350, 450, and 550 °C) were incorporated into a sandy loam soil and their impact on C turnover compared to an unamended soil or one amended with unprocessed straw. Biochar, torrefied biomass, and straw application induced a shift in the soil microbial community size, activity, and structure with the greatest effects in the straw‐amended soil. In addition, they also resulted in changes in microbial carbon use efficiency (CUE) leading to more substrate C being partitioned into catabolic processes. While overall the biochar, torrefied biomass, and straw addition increased soil respiration, it reduced the turnover rate of the simple C substrates, plant residues, and native SOM and had no appreciable effect on the turnover rate of the microbial biomass. The negative SOM priming was positively correlated with biochar production temperature. We therefore ascribe the increase in soil CO2 efflux to biochar‐derived C rather than that originating from SOM. In conclusion, the SOM priming magnitude is strongly influenced by both the soil organic C quality and the biochar properties. In comparison with straw, biochar has the greatest potential to promote soil C storage. However, straw and torrefied biomass may have other cobenefits which may make them more suitable as a CO2 abatement strategy.

The effect of biochar and its interaction with the earthworm Pontoscolex corethrurus on soil microbial community structure in tropical soils.

Biochar effects on soil microbial abundance and community structure are keys for understanding the biogeochemical cycling of nutrients and organic matter turnover, but are poorly understood, in particular in tropical areas. We conducted a greenhouse experiment in which we added biochars produced from four different feedstocks [sewage sludge (B1), deinking sewage sludge (B2), Miscanthus (B3) and pine wood (B4)] at a rate of 3% (w/w) to two tropical soils (an Acrisol and a Ferralsol) planted with proso millet (Panicum milliaceum L.). The interactive effect of the addition of earthworms was also addressed. For this purpose we utilized soil samples from pots with or without the earthworm Pontoscolex corethrurus, which is a ubiquitous earthworm in tropical soils. Phospholipid fatty acid (PLFA) measurements showed that biochar type, soil type and the presence of earthworms significantly affected soil microbial community size and structure. In general, biochar addition affected fungal but not bacterial populations. Overall, biochars rich in ash (B1 and B2) resulted in a marked increase in the fungi to bacteria ratio, while this ratio was unaltered after addition of biochars with a high fixed carbon content (B3 and B4). Our study remarked the contrasting effect that both, biochar prepared from different materials and macrofauna, can have on soil microbial community. Such changes might end up with ecosystem-level effects.

Microbiological indicators of soil quality and degradation following conversion of native forests to continuous croplands

Deforestation resulting from forest conversion to agricultural land use is an important issue worldwide. This phenomenon is known to influence the activity and size of soil microbial community due to changes in environmental conditions with subsequent losses of soil organic matter (SOM) and soil quality degradation. The objective of this study was to investigate the relationship between soil organic carbon (SOC) losses and enzyme activities following land use conversion from native forests to continuous croplands. The amount of soil microbial biomass carbon (SMBC) and the activity of five soil enzymes (i.e., urease, invertase, alkaline phosphatase, acid phosphatase and arylsulfatase) were measured in croplands derived from forests and adjacent natural forests all on similar soil type at Gorgan site located in Northeast Iran. The content of SMBC decreased (47–83%) with deforestation at both soil sampling depths (0–20 and 20–40cm). With the exception of phosphatases, the absolute activities of soil enzymes (activity on a soil mass basis) tended to decrease significantly (15–35%) with continuous cultivation. However, the specific enzyme activities expressed either per unit of SOC or SMBC tended to increase (about 1.5–5.5 times) with conversion of forestlands to croplands. The significant positive correlation between enzyme activity per SMBC and C turnover rate may imply that a faster C cycle and loss due to deforestation is related to a greater enzymatic activity by a smaller size of microbial biomass in cropland soils. In brief, the specific activities of soil enzymes could be used to reveal SOM losses and soil degradation in natural forest ecosystems, and to identify changes in soil quality and fertility following deforestation. Changes or improvements in soil management such as cessation of cultivation or implementing agricultural practices that stop or minimize soil disturbance are most likely needed to stop further soil degradation, restore soil quality and rebuild SOC stocks to offset CO2 emissions in these ecosystems.

Soil volatile analysis by proton transfer reaction-time of flight mass spectrometry (PTR-TOF-MS)

We analyzed the volatile organic compounds (VOCs) emitted from different soils by using the PTR-MS-TOF technique under laboratory conditions and compared them with soil chemical biochemical activities. The emitted VOCs were related to soil microbial biomass, soil respiration and some soil enzyme activities so as to evaluate if size and activity of soil microbial communities influenced the soil VOCs profiles. Our results showed that the emitted VOCs discriminated between soils with different properties and management, and differences in the VOCs emission profiles were likely related to the active metabolic pathways in the microbial communities of the three studied soil. Our results also showed that some soil enzyme activities such as β-glucosidase and arylsulfatase were possibly involved in the release of compounds fueling microbial metabolic pathways leading to the production of specific VOCs. It was concluded that the PTR-MS-TOF technique is suitable for analyze VOCs emission from soil and that studies comparing soil enzyme activities and soil volatile profiles can reveal the origin of VOCs and give further insights on microbial activity and soil functionality.

Soil microbial community structure and function responses to successive planting of Eucalyptus

Many studies have shown soil degradation after the conversion of native forests to exotic Eucalyptus plantations. However, few studies have investigated the long-term impacts of short-rotation forestry practices on soil microorganisms. The impacts of Eucalyptus successive rotations on soil microbial communities were evaluated by comparing phospholipid fatty acid (PLFA) abundances, compositions, and enzyme activities of native Pinus massoniana plantations and adjacent 1st, 2nd, 3rd, 4th generation Eucalyptus plantations. The conversion from P. massoniana to Eucalyptus plantations significantly decreased soil microbial community size and enzyme activities, and increased microbial physiological stress. However, the PLFA abundances formed “∪” shaped quadratic functions with Eucalyptus plantation age. Alternatively, physiological stress biomarkers, the ratios of monounsaturated to saturated fatty acid and Gram+ to Gram-bacteria, formed “∩” shaped quadratic functions, and the ratio of cy17:0 to 16:1?7c decreased with plantation age. The activities of phenol oxidase, peroxidase, and acid phosphatase increased with Eucalyptus plantation age, while the cellobiohydrolase activity formed “∪” shaped quadratic functions. Soil N:P, alkaline hydrolytic nitrogen, soil organic carbon, and understory cover largely explained the variation in PLFA profiles while soil N:P, alkaline hydrolytic nitrogen, and understory cover explained most of the variability in enzyme activity. In conclusion, soil microbial structure and function under Eucalyptus plantations were strongly impacted by plantation age. Most of the changes could be explained by altered soil resource availability and understory cover associated with successive planting of Eucalyptus. Our results highlight the importance of plantation age for assessing the impacts of plantation conversion as well as the importance of reducing disturbance for plantation management.

Soil Microbial Biomass, Basal Respiration and Enzyme Activity of Main Forest Types in the Qinling Mountains

Different forest types exert essential impacts on soil physical-chemical characteristics by dominant tree species producing diverse litters and root exudates, thereby further regulating size and activity of soil microbial communities. However, the study accuracy is usually restricted by differences in climate, soil type and forest age. Our objective is to precisely quantify soil microbial biomass, basal respiration and enzyme activity of five natural secondary forest (NSF) types with the same stand age and soil type in a small climate region and to evaluate relationship between soil microbial and physical-chemical characters. We determined soil physical-chemical indices and used the chloroform fumigation-extraction method, alkali absorption method and titration or colorimetry to obtain the microbial data. Our results showed that soil physical-chemical characters remarkably differed among the NSFs. Microbial biomass carbon (Cmic) was the highest in wilson spruce soils, while microbial biomass nitrogen (Nmic) was the highest in sharptooth oak soils. Moreover, the highest basal respiration was found in the spruce soils, but mixed, Chinese pine and spruce stands exhibited a higher soil qCO2. The spruce soils had the highest Cmic/Nmic ratio, the greatest Nmic/TN and Cmic/Corg ratios were found in the oak soils. Additionally, the spruce soils had the maximum invertase activity and the minimum urease and catalase activities, but the maximum urease and catalase activities were found in the mixed stand. The Pearson correlation and principle component analyses revealed that the soils of spruce and oak stands obviously discriminated from other NSFs, whereas the others were similar. This suggested that the forest types affected soil microbial properties significantly due to differences in soil physical-chemical features.

CARD-FISH analysis of prokaryotic community composition and abundance along small-scale vegetation gradients in a dry arctic tundra ecosystem

The size and composition of soil microbial communities have important influences on terrestrial ecosystem processes such as soil decomposition. However, compared with studies of aboveground plant communities, there are relatively few studies on belowground microbial communities and their interactions with aboveground vegetations in the arctic region. In this study, we conducted the first investigation of the abundance and composition of prokaryotic communities along small-scale vegetation gradients (ca. 1–3 m) in a dry arctic tundra ecosystem in Northern Sweden using fluorescent in situ hybridization (FISH) coupled with catalyzed reporter deposition (CARD). The number of prokaryotic cells increased with increasing vegetation cover along vegetation gradients, mainly as a function of increased amounts of soil carbon and moisture. Eubacteria and Archaea constituted approximately 59.7% and 33.4% of DAPI-positive cells, respectively. Among the analyzed bacterial phyla and sub-phyla, Acidobacteria and α-proteobacteria were the most dominant groups, constituting approximately 13.5% and 10.7% of DAPI-positive cells, respectively. Interestingly, the soil prokaryotic community composition was relatively unaffected by the dramatic changes in the aboveground vegetation community. Multivariate analyses suggested that the prokaryotic community composition depended on soil pH rather than on aboveground vegetation. Surface plants are weak predictors of the composition of the soil microbial community in the studied soil system and the size of the community is constrained by carbon and water availability. In addition, our study demonstrated that CARD-FISH, which is still a rarely-used technique in soil ecology, is effective for quantifying soil microbes.

Multivariate analysis of soils: microbial biomass, metabolic activity, and bacterial‐community structure and their relationships with soil depth and type

AbstractA multivariate statistical approach based on a large data set of abiotic and biotic variables was used to classify four contrasting‐land‐use soils. Soil samples were collected at increasing depth from a calcareous agricultural soil, a temperate upland grassland soil, a moderately acidic agricultural soil, and an acidic pine forest soil. Analytical investigations were carried out by using a combination of conventional physical, chemical, and biochemical methods coupled with denaturing gradient gel electrophoresis (DGGE) community fingerprinting of PCR‐amplified 16S rRNA gene‐coding fragments from soil‐extracted total‐community DNA. The data set of soil physical, chemical, and biochemical variables was reduced in dimensionality by means of a principal‐component‐analysis (PCA) procedure. Compositional shifts in soil bacterial‐community structure were analyzed through a clustering algorithm that allowed identifying six main bacterial‐community clusters. DGGE fingerprinting clusters were further analyzed by discriminant analysis (DA) using extracted PCA components as explanatory variables. Soil organic matter–related pools (TOC, TN) and functionally related active pools (microbial biomass C and N, K2SO4‐extractable C) significantly decreased with soil depth, and resulted statistically linked to one other and positively related to enzymatic activities (acid phosphatase, arylsulfatase, β‐glucosidase, dehydrogenase, hydrolysis of fluorescein diacetate) and silt content. Besides organic‐C gradients, pedogenetic‐driven physico‐chemical properties, and possibly soil thermal and moisture regimes seemed to play a key role in regulating size and energetic ecophysiological status of soil microbial communities. DGGE analysis showed that contrasting horizons were conducive to the dominance of particular bacterial ribotypes. DA revealed that the bacterial‐community structure was mainly influenced by organic matter–related variables (TOC, TN, CEC, Cflush, Nflush, Extr‐C), chemical properties such as pH, CaCO3, and EC, together with textural properties. Results indicate that, beyond land use or plant cover, pedogenetic‐driven physico‐chemical conditions changing with soil type and depth are the key factors regulating microbial size and activity, and determining the genetic structure of bacterial community.

Microbial 13C utilization patterns via stable isotope probing of phospholipid biomarkers in Mojave Desert soils exposed to ambient and elevated atmospheric CO2

AbstractChanges in plant inputs under changing atmospheric CO2 can be expected to alter the size and/or functional characteristics of soil microbial communities which can determine whether soils are a C sink or source. Stable isotope probing was used to trace autotrophically fixed 13C into phospholipid fatty acid (PLFA) biomarkers in Mojave Desert soils planted with the desert shrub, Larrea tridentata. Seedlings were pulse‐labeled with 13CO2 under ambient and elevated CO2 in controlled environmental growth chambers. The label was chased into the soil by extracting soil PLFAs after labeling at Days 0, 2, 10, 24, and 49. Eighteen of 29 PLFAs identified showed 13C enrichment relative to nonlabeled control soils. Patterns of PLFA enrichment varied temporally and were similar for various PLFAs found within a microbial functional group. Enrichment of PLFA 13C generally occurred within the first 2 days in general and fungal biomarkers, followed by increasingly greater enrichment in bacterial biomarkers as the study progressed (Gram‐negative, Gram‐positive, actinobacteria). While treatment CO2 level did not affect total PLFA‐C concentrations, microbial functional group abundances and distribution responded to treatment CO2 level and these shifts persisted throughout the study. Specifically, ratios of bacterial‐to‐total PLFA‐C decreased and fungal‐to‐bacterial PLFA‐C increased under elevated CO2 compared with ambient conditions. Differences in the timing of 13C incorporation into lipid biomarkers coupled with changes in microbial functional groups indicate that microbial community characteristics in Mojave Desert soils have shifted in response to long‐term exposure to increased atmospheric CO2.

Effect of decabromodiphenyl ether (BDE 209) on soil microbial activity and bacterial community composition

In many areas of the world, polybrominated diphenyl ethers are ubiquitous due to their use as fire retardants. It is known that the hydrophobic characteristics of PBDEs cause them to sink in soil and sediment, yet their effect on microbes within the soil is not well understood. In this study, soil was treated with 1, 10, and 100 mg kg−1 BDE 209 for up to 45 days. Treatment effects on soil enzymatic activities for urease and catalase were evaluated. The impact on the microbe community structure was estimated using denaturing gradient gel electrophoresis after polymerase chain reaction amplification of total genomic DNA, using bacterial variable V3 region targeted primers. The effects on the soil microbial community size and major bacterial groups were evaluated using fluorescence in situ hybridization analysis. Forty-five days after the addition of BDE 209, urease activity was suppressed by BDE 209, even at a concentration of 1 mg kg−1. Catalase activity increased in the samples containing lower concentrations of BDE 209, but was suppressed in samples containing higher concentrations. The bacterial community also varied in response to the addition of BDE 209, and the variation of community composition differed among treatments. In addition, α, β and γ subclass proteobacteria decreased in the group of 100 mg kg−1 BDE 209 spiked soil after 45 days of treatment. Throughout the experiment, no BDE 209 degradation was detected under darkness. These observations demonstrated that BDE 209 in soil, although of low bioavailability, had an adverse impact on the structure and function of the soil microbial community and microbial processes.

Size and phenotypic structure of microbial communities within soil profiles in relation to play surfaces on a UK golf course

Amenity turf accounts for up to 4% of land-use in urban areas, providing key refuges for both above- and below-ground biodiversity. Golf courses occupy the largest surface area of all sports facilities; however, only a limited amount of microbial ecology research has been carried out to investigate differences in the size and structure of microbial communities of the soil. The soil microbial community is a key agent in nutrient cycling and delivery of other ecosystem goods and services; however, there has been little work focused on amenity turf ecosystems of the UK. A study of soil microbial community size and structure on the range of surfaces maintained for the game of golf at a single golf course in relation to depth through the soil profile was carried out. Soil from different play surfaces showed significant differences in the size (measured using chloroform fumigation extraction) of the microbial community (P < 0.01), with a greater concentration of microbial biomass at 0-75 mm from the surface, compared with deeper zones (P < 0.01). Principal component analysis of phospholipid fatty acids (PLFA) biomarkers indicated that the community structure was significantly different in the 0-75 mm from the surface on all areas of the golf course investigated (P < 0.05, in all cases). The PLFA biomarkers consistently associated with such discrimination were 16:0 and 18:1ω9 c. These findings suggest that there is a consistently larger and similarly structured microbial community associated with the surface thatch layer, commonly found in amenity turf.

Size and phenotypic structure of microbial communities within soil profiles in relation to different playing areas on a UK golf course

SummaryAmenity turf accounts for up to 4% of land‐use in urban areas, providing key refuges for both above‐ and below‐ground biodiversity. Golf courses occupy the largest surface area of all sports facilities; however, only a limited amount of microbial ecology has been carried out to investigate differences in the size and structure of microbial communities of the soil. The soil microbial community is a key agent in nutrient cycling and delivery of other ecosystem goods and services; however, there has been little work focused on amenity turf ecosystems in the UK. A study of soil microbial community size and structure, on the range of playing areas maintained for the game of golf at a single golf course in relation to depth through the soil profile, was carried out. Soil from different playing areas showed significant differences in the size (measured using chloroform fumigation extraction) of the microbial community (P &lt; 0.01), with a greater concentration of microbial biomass at 0–75 mm from the surface, compared with deeper zones (P &lt; 0.01). Principal component analysis of phospholipid fatty acid (PLFA) biomarkers indicated that the community structure was significantly different at 0–75 mm from the surface on all areas of the golf course investigated (P &lt; 0.05, in all cases). The PLFA biomarkers consistently associated with such discrimination were 16:0 and 18:1ω9 c. These findings suggest that there is a consistently larger and similarly structured microbial community associated with the surface thatch layer, commonly found in amenity turf.

Changes in microbial community structure in soil as a result of different amounts of nitrogen fertilization

The changes in size, activity and structure of soil microbial community caused by N fertilization were studied in a laboratory incubation experiment. The rates of N fertiliser applied (KNO3) were 0 (control), 100 and 2,000 μg N g−1 soil. Despite no extra C sources added, a high percentage of N was immobilized. Whereas no significant increase of microbial C was revealed during incubation period, microbial growth kinetics as determined by the substrate-induced growth-response method demonstrated a significant decrease in the specific growth rate of microbial community in soil treated with 2,000 μg N g−1 soil. Additionally, a shift in microbial community structure resulting in an increase in fungal biomarkers, mainly in the treatment with 2,000 μg N g−1 soil was visible.

Application of fresh and composted organic wastes modifies structure, size and activity of soil microbial community under semiarid climate

Although the application of organic amendments is considered a suitable tool for improving soil fertility, few studies have been conducted in semiarid climates to evaluate the joint effect of such practice on the structure and function of the soil's microbial community. The aim of this work therefore was to make a comparative study of the effect of organic materials of differing degrees of stabilization (a sewage sludge and a compost made from the same) on the size, activity and structure of the microbial community in a semiarid soil. In samples taken in spring, summer and autumn over a 2-year period we analysed parameters that indicate the size of the microbial community [microbial biomass C (MBC)], its general activity (ATP and respiration) and specific activity related to the N, P and C cycles in the soil (urease, phosphatase and β-glucosidase, respectively). Two years after the organic amendment, the structure of the microbial community was studied by analysing phospholipid fatty acids (PLFAs). At the end of the experiment, the MBC of the compost and sludge-treated soils was 489 and 463 mg C mic kg −1, respectively, while the MBC of the control soils was 247 mg C mic kg −1. Over the 2-year period, the higher β-glucosidase, urease and alkaline phosphatase activities of compost and sludge-treated soils reflected higher substrate availability in these plots compared to the control plots. Indeed, plant abundance increased by about 25% with organic amendments. Whereas the bacterial to fungal ratio of signature PLFAs did not change, the ratio of monounsaturated/saturated and the ratio of Gram +/Gram − of the different treatments indicated that a different bacterial community developed 2 years after amendment with compost and sludge. Thus, factor analysis via PLFAs showed a change in microbial community structure in amended soils versus control soil. It can be concluded that microbial biomass and activity of degraded semiarid soils can be improved by the addition of organic materials of differing degrees of stabilization (compost and sewage sludge). Compost-amended soils showed the highest carbon contents, while in general no differences in activity or microbial biomass where found between compost or sludge treatments. Although phytotoxic substances in sewage sludge might negatively affect plant development, the similar density of plant cover developed in sludge and compost-treated soils suggests that any phytotoxic substances had been degraded.

Exploring soil microbial communities and soil organic matter: Variability and interactions in arable soils under minimum tillage practice

This study describes an integrated approach (1) to monitor the quantity and quality of water extractable organic matter (WEOM) and size, structure and function of microbial communities in space (depth) and time, and (2) to explore the relationships among the measured properties. The study site was an arable field in Southern Germany under integrated farming management including reduced tillage. Samples of this Eutric Cambisol soil were taken in July 2001, October 2001, April 2002 and July 2002 and separated into three depths according to the soil profile (0–10 cm, 10–28 cm and 28–40 cm). For each sample, the quantity and quality (humification index, HIX) of water extractable organic matter (WEOM) were measured concomitantly with soil enzyme activities (alkaline phosphatase, β-glucosidase, protease) and microbial community size ( C mic). Furthermore, microbial community structure was characterised based on the fingerprints of nucleic acids (DNA) as well as phospholipid fatty acids (PLFA). We observed strong influences of sampling date and depth on the measured parameters, with depth accounting for more of the observed variability than date. Increasing depth resulted in decreases in all parameters, while seasonal effects differed among variants. Principal component (PC) analysis revealed that both DNA and PLFA fingerprints differentiated among microbial communities from different depths, and to a smaller extent, sampling dates. The majority of the 10 PLFAs contributing most to PC 1 were specific for anaerobes. Enzyme activities were strongly related to C mic, which was depending on water extractable organic carbon and nitrogen (WEOC and WEON) but not to HIX. HIX and WEOM interact with the microbial community, illustrated by (1) the correlation with the number of PLFA peaks (community richness), and (2) the correlations with community PC analysis scores.