Small Diamondoids Research Articles

A Playground for Heavy Atom Tunnelling: Neutral Substitutional Defect Rearrangement from Diamondoids to Diamonds.

Many diamond properties are defined by substitutional defects (i. e., a carbon atom replaced by another element), which may involve the formation of structural isomers that can interconvert. Herein, we analysed by computational means the structure, thermodynamics, and kinetics of substitutional nitrogen, boron, and oxygen from small diamondoids up to the diamond bulk, focusing on the possibility of heavy atom quantum tunnelling rearrangement between the isomers. The large range of threshold energies and bond lengths lead to a variety of intriguing behaviours, including cage size dependent thermally activated tunnelling of nitrogen, and quantum delocalization of boron. In addition, we predict that applying an external electric field makes it possible to control the rearrangement thermodynamics and kinetics through tunnelling, which lets us hypothesize that these systems can potentially be used as atomic memory devices.

Determination of the phonon sidebands in the photoluminescence spectrum of semiconductor nanoclusters from ab initio calculations

We propose a theoretical approach based on (constrained) density functional theory and the Franck-Condon approximation for the calculation of the temperature dependent photoluminescence of nanostructures. The method is computationally advantageous and only slightly more demanding than a standard density functional theory calculation and includes transitions into multiphonon final states (higher class transitions). We use the approach for Si and CdSe colloidal nanoclusters with up to 693 atoms and obtain very good agreement with experiment which allows us to identify specific peaks and explain their origin. Generally, breathing type modes are shown to dominate the phonon replicas, while optical modes have significant contributions for CdSe nanoclusters (NCs) and play a lesser role in Si NCs. We obtain significant anti-Stokes peak starting at 140 K for Si NC explaining the broadening observed in the corresponding experiment. We also apply the method to small molecular-like carbon structures (diamondoids), where electron-phonon coupling is typically large, and find that multiphonon processes (up to class 4) are very relevant and necessary to compare favorably with experiment. While it is crucial to include these multiphonon states in the small diamondoids with few tens of atoms, neglecting them in only marginally larger ${\mathrm{Si}}_{87}{\mathrm{H}}_{76}$ and ${\mathrm{Cd}}_{43}{\mathrm{Se}}_{44}{\mathrm{H}}_{76}^{*}$ (and larger) quantum dots represents a good approximation.

A hybrid molecular peapod of sp2- and sp3-nanocarbons enabling ultrafast terahertz rotations

The internal hollow space of carbon nanotubes provides a unique nanometre-sized space to capture various molecular entities. The inner space circumfused by sp2-carbon networks can also encapsulate diamondoid molecules to afford sp2/sp3-hybrid nanocarbon peapods that have recently emerged as unique nanostructures. In this study, the sp2/sp3-hybrid peapods have been mimicked by adopting a cylindrical molecule and the smallest diamondoid, i.e., adamantane, to demonstrate the existence of ultrafast rotational motion. The solid-state rotational frequency is measured by NMR spectroscopy to record 1.06 THz that is, to the best of our knowledge, the largest value recorded for solid-state rotations of molecules. Theoretical calculations reveal that multivalent CH-π hydrogen bonds anchored the diamondoid guest on the π-wall of the cylindrical host. The weak hydrogen bonds are prone not only to cleave but also to regenerate at the interfaces, which give freedom to the guest for ultrafast isotropic rotations in the inertial regime.

X-ray spectroscopic identification of strain and structure-based resonances in a series of saturated carbon-cage molecules: Adamantane, twistane, octahedrane, and cubane

Novel nanocarbons such as fullerenes, nanotubes, graphene, and nanodiamond reside at the cutting edge of nanoscience and technology. Along with chemical functionalization, geometric constraints (such as extreme curvature in nanotubes or defects within or at the surfaces of diamond nanoparticles) significantly alter the electronic states of the nanocarbon material. Understanding the effects of steric strain on the electronic structure is critical to developing nanoelectronic applications based on these materials. This paper presents a fundamental study of how strain affects the electronic structure in a benchmark series of some fundamental saturated carbon cage compounds. Adamantane, C10H16, the smallest diamondoid and arguably the smallest nanodiamond crystallite, has carbon atoms essentially commensurate with diamond lattice positions and possesses by far the least molecular strain of this series. Twistane also is a C10H16 isomer but the fixed cyclohexane twist conformation of the central ring introduces additional strain into the cage. Octahedrane [(CH)12] and cubane [(CH)8] are considerably more strained, culminating in cubane where carbon–carbon bonds lie either parallel or orthogonal to one another. Using gas-phase near-edge x-ray absorption fine structure spectroscopy to probe the unoccupied electronic states, we observe two major progressions across this series. First, a broad C–C σ* resonance in the absorption splits into two more narrow and intense resonances with increasing strain. Second, the first manifold of states previously associated with tertiary C–H σ* in the diamondoid series appears to broaden and shift to lower energy. This feature is more than twice as intense in cubane than in octahedrane, even though these two molecules have only tertiary carbons, with the chemical formula (CH)x. The spectral differences are entirely due to the shape of the molecules; in particular, in cubane, the features arise from a high degree of p-p interaction between parallel C–C bonds. In contrast to the conventional wisdom that near-edge x-ray absorption is primarily an atomically localized spectroscopy, molecular shape and associated strain lead to the dominant features in spectra acquired from this fundamental series of carbon cage structures.

Group‐IV‐based selective CH bond activation of a diamondoid—A density functional theory study

AbstractSelective synthetic modifications on diamondoids (well‐defined molecular nano‐diamonds) are difficult. Group IV organometallic complexes are promising systems for CH bond activation. We study the CH bond activation of the hard‐to‐activate CH2 positions of the adamantyl group (the smallest diamondoid) using density functional theory. As a platform for activation, we tether the adamantyl group to the cyclopentadienyl in a substituted bis‐cyclopentadienyl group IV metal diphenyl complex. The mechanism proposed in the experimental paper reporting the activation of C(Me)2‐Ph or t‐Bu groups using Zr(IV) involves an η2‐benzyne complex intermediate. Our computational work confirms the two‐step mechanism proposed for activation of C(Me)2‐Ph or t‐Bu using Zr(IV) and further extends it to Ti(IV) and Hf(IV). The first step forms the benzyne complex. In the second step, the cyclopentadienyl‐bound group is activated through a mechanism that closely resembles a σ‐bond metathesis when the benzyne complex is described as a metallacyclopropene We demonstrate through computations that the two‐step reaction can be successfully applied to the adamantyl group. CH bond activation of adamantyl is found to be thermodynamically and kinetically feasible. The important question of regioselectivity is addressed. We predict that α‐CH bond activation will be achievable with Ti (thermodynamic control), and selective γ‐CH bond activation with Zr (kinetic or thermodynamic control).

Nuclear dynamic effects on electronic properties of functionalized diamondoids

By combining time-dependent density functional theory (TD-DFT) and Franck-Condon (FC) approximation, the effects of nuclear dynamic on the optical gap (OG) of the smallest diamondoids (adamantane and diamantane) when functionalized with three different chemical groups or atom (hydroxyl, amino, fluorine) are studied. The effects of structural relaxation and quantum zero-point on excitation energy are considered. We found that vibrationally-resolved electronic spectra and the amount of the OG renormalizations are modified in small diamondoids by the chemistry of the surface. The lowest unoccupied molecular orbitals (LUMO) do not show significant couplings to vibrations. Functional groups (–OH or NH2) and the fluorine atom show different coupling features. For small diamondoids, HOMO orbitals are dominantly characterized by nonbonding pairs of OH or NH2 groups, which suppress the influence of coupling the cage electrons to nuclear motion through the electronic transition. Destroying the coupling of electrons to nuclear motion is more significant in functionalization with OH group. In contrast, at least for low fluorine coverage, the HOMO orbital is localized inside the cages. Consequently, nuclear dynamics follows the same feature as for pristine diamondoids in fluorinated diamondoids.

Optical Properties of Single- and Double-Functionalized Small Diamondoids.

The rational control of the electronic and optical properties of small functionalized diamond-like molecules, the diamondoids, is the focus of this work. Specifically, we investigate the single- and double- functionalization of the lower diamondoids, adamantane, diamantane, and triamantane with -NH2 and -SH groups and extend the study to N-heterocyclic carbene (NHC) functionalization. On the basis of electronic structure calculations, we predict a significant change in the optical properties of these functionalized diamondoids. Our computations reveal that -NH2 functionalized diamondoids show UV photoluminescence similar to ideal diamondoids while -SH substituted diamondoids hinder the UV photoluminescence due to the labile nature of the S-H bond in the first excited state. This study also unveils that the UV photoluminescence nature of -NH2 diamondoids is quenched upon additional functionalization with the -SH group. The double-functionalized derivative can, thus, serve as a sensitive probe for biomolecule binding and sensing environmental changes. The preserved intrinsic properties of the NHC and the ideal diamondoid in NHC-functionalized-diamondoids suggests its utilization in diamondoid-based self-assembled monolayers (SAM), whose UV-photoluminescent signal would be determined entirely by the functionalized diamondoids. Our study aims to pave the path for tuning the properties of diamondoids through a selective choice of the type and number of functional groups. This will aid the realization of optoelectronic devices involving, for example, large-area SAM layers or diamondoid-functionalized electrodes.

Tuning the HOMO-LUMO Energy Gap of Small Diamondoids Using Inverse Molecular Design.

Functionalized diamondoids show great potential as building blocks for various new optoelectronic applications. However, until now, only simple mono and double substitutions were investigated. In this work, we considered up to 10 and 6 sites for functionalization of the two smallest diamondoids, adamantane and diamantane, respectively, in search for diamondoid derivatives with a minimal and maximal HOMO-LUMO energy gap. To this end, the energy gap was optimized systematically using an inverse molecular design methodology based on the best-first search algorithm combined with a Monte Carlo component to escape local optima. Adamantane derivatives were found with HOMO-LUMO gaps ranging from 2.42 to 10.63 eV, with 9.45 eV being the energy gap of pure adamantane. For diamantane, similar values were obtained. The structures with the lowest HOMO-LUMO gaps showed apparent push-pull character. The push character is mainly formed by sulfur or nitrogen dopants and thiol groups, whereas the pull character is predominantly determined by the presence of electron-withdrawing nitro or carbonyl groups assisted by amino and hydroxyl groups via the formation of intramolecular hydrogen bonds. In contrast, maximal HOMO-LUMO gaps were obtained by introducing numerous electronegative groups.

Superstructures with diverse morphologies and highly ordered fullerene C60 arrays from 1 : 1 and 2 : 1 adamantane-C60 hybrid molecules.

Superstructures from fullerene C60-containing compounds, especially those tethered to rigid functional groups with defined shapes, remain largely unexplored. Being the smallest diamondoid, adamantane (Ad) can be viewed as a promising building block for the construction of well-defined superstructures. Here, we report the syntheses of 1 : 1 (4a) and 2 : 1 (4b) Ad-C60 hybrid molecules, which were then used to construct superstructures in binary solvent mixtures via a modified liquid/liquid interfacial precipitation (LLIP) method using CHCl3 as a good solvent. Typically in the combination of DMSO/CHCl3 with a final concentration (cf) of 1.0 mmol L-1, 4a successively forms spheres, plates, nanoflowers and plicated particles with increasing content of DMSO while 4b forms cuboid blocks and microparticles with hierarchically organized surfaces. Changing from DMSO to other poor solvents including acetone, MeOH and EtOAc leads to variations of the morphology of the superstructures for both 4a and 4b. At the nanometer length scale, 4a and 4b adopt different organizations within the superstructures. While 4a tends to self-organize into lamellae with highly ordered C60 layers, the hexagonal phase is dominant in the superstructures formed by 4b. Wettability tests indicate that films formed by the superstructures of 4a and 4b show anti-wetting properties. Besides the solvent effect, the morphology of the superstructures can be also tuned by concentration. For example, when cf is lowered to 0.5 mmol L-1, a new form of superstructure, i.e., fibers, was detected for 4a. Our results also indicate that besides the solvent-induced aggregate transition, gravity-induced sedimentation and subsequent structure ripening can have a significant influence on the final morphology of the superstructures and the aggregate transition pathways.

Towards double-functionalized small diamondoids: selective electronic band-gap tuning

Diamondoids are nanoscale diamond-like cage structures with hydrogen terminations, which can occur in various sizes and with a diverse type of modifications. In this work, we focus on the structural alterations and the effect of doping and functionalization on the electronic properties of diamondoids, from the smallest adamantane to heptamantane. The results are based on quantum mechanical calculations. We perform a self-consistent study, starting with doping the smallest diamondoid, adamantane. Boron, nitrogen, silicon, oxygen, and phosphorus are chosen as dopants at sites which have been previously optimized and are also consistent with the literature. At a next step, an amine- and a thiol- group are separately used to functionalize the adamantane molecule. We mainly focus on a double functionalization of diamondoids up to heptamantane using both these atomic groups. The effect of isomeration in the case of tetramantane is also studied. We discuss the higher efficiency of a double-functionalization compared to doping or a single-functionalization of diamondoids in tuning the electronic properties, such as the electronic band-gap, of modified small diamondoids in view of their novel nanotechnological applications.

Nanosecond Pulsed Electric Discharge Synthesis of Carbon Nanomaterials in Helium at Atmospheric Pressure from Adamantane

Nanosecond pulsed discharges in a helium-adamantane mixture at atmospheric pressure were used for the synthesis of carbon nanomaterials, using the smallest diamondoid, adamantane, as a precursor. The discharges were generated using a point-to-plane electrode with a gap distance of 1–2 mm, at room temperature, 373 and 473 K. Scanning electron microscopy of the electrodes showed the formation of carbonaceous deposits with different morphologies, while micro-Raman spectra of the deposits covering the electrodes contained features characteristic of carbon structures of varying order. To study the effect of the temperature conditions on the plasma characteristics, time-resolved optical emission spectroscopy measurements were carried out at room temperature and 456 K. The optical emission spectra showed that at room temperature the afterglow has a duration of about several microseconds, whereas at 456 K, the plasma decay is on the order of only 1 \({\mu }\) s. This may be an indication that the carbon nanomaterials are predominantly formed in the afterglow of the nanosecond pulsed discharge, with the presence of hydrogen radicals facilitating the formation of carbonaceous materials.

Chemically modified diamondoids as biosensors for DNA

Understanding the interaction of biological molecules with materials is essential in view of the novel potential applications arising when these two are combined. To this end, we investigate the interaction of DNA with diamondoids, a broad family of tiny hydrogen-terminated diamond clusters with high technological potential. We model this interaction through quantum-mechanical computer simulations and focus on the hydrogen bonding possibilities of the different DNA nucleobases to the lower amine-modified diamondoids with respect to their relative distance and orientation. Our aim is to promote the binding between these two units, and probe this through the association energy, the electronic structure of the nucleobase-diamondoid system, and the specific role of their frontier orbitals. We discuss the relevance of our results in view of biosensing applications and specifically nanopore sequencing of DNA.

Prediction of the Hydration Properties of Diamondoids from Free Energy and Potential of Mean Force Calculations

Molecular dynamics simulations were used to predict the thermodynamical properties of the hydration process of the adamantane, diamantane, and trimantane, the first three members of the series of diamondoids. Free-energy results suggest that the water solubility of these molecules is low. The hydration free energy increases with size of the diamondoid. As for the alkane hydrocarbons, hydration free energy correlates linearly with the surface accessible solvent area; however, here it has been shown that small diamondoids present hydration free energy significantly lower than the n-alkanes of similar molecular weights. The decomposition of the hydration free energy in enthalpic and entropic terms revealed that the hydration process of the small diamondoids is entropic driven. The potential of mean-force calculations indicates that the aggregation of these species in the aqueous medium should occur spontaneously and that the contribution of the solvent is greater the larger the diamondoid.

Comparison of quantum Monte Carlo with time-dependent and static density-functional theory calculations of diamondoid excitation energies and Stokes shifts

We compute the absorption and emission energies and hence Stokes shifts of small diamondoids as a function of size using different theoretical approaches, including density-functional theory (DFT) and quantum Monte Carlo (QMC) calculations. The absorption spectra of these molecules are also investigated by time-dependent DFT and compared with experiment. We analyze the structural distortion and formation of a self-trapped exciton in the excited state, and we study the effects of these on the Stokes shift as a function of size. Compared to recent experiments, QMC overestimates the excitation energies by about 0.8(1) eV on average. Benefiting from a cancellation of errors, the optical gaps obtained in DFT calculations with the B3LYP functional are in better agreement with experiment. It is also shown that time-dependent B3LYP calculations can reproduce most of the features found in the experimental spectra. According to our calculations, the structures of diamondoids in the excited state show a distortion which is hardly noticeable compared to that found for methane. As the number of diamond cages is increased, the distortion mechanism abruptly changes character. We have shown that the Stokes shift is size dependent and decreases with the number of diamond cages. If we neglect orbital symmetry effects on the optical excitations, the rate of decrease in the Stokes shift is, on average, 0.1 eV per cage for small diamondoids.

ELECTRONIC SPECTROSCOPY OF FUV-IRRADIATED DIAMONDOIDS: A COMBINED EXPERIMENTAL AND THEORETICAL STUDY

Irradiation with high energy photons (10.2 - 11.8 eV) was applied to small diamondoids isolated in solid rare gas matrices at low temperature. The photoproducts were traced via UV absorption spectroscopy. We found that upon ionization the smallest of these species lose a peripheral H atom to form a stable closed-shell cation. This process is also likely to occur under astrophysical conditions for gas phase diamondoids and it opens the possibility to detect diamond-like molecules using their rotational spectrum since the dehydrogenated cations possess strong permanent dipole moments. The lowest-energy electronic features of these species in the UV were found to be rather broad, shifting to longer wavelengths with increasing molecular size. Calculations using time-dependent density functional theory support our experimental findings and extend the absorption curves further into the vacuum ultraviolet. The complete sigma - sigma* spectrum displays surprisingly strong similarities to meteoritic nanodiamonds containing 50 times more C atoms.

Infrared Spectroscopy of Diamondoid Molecules: New Insights into the Presence of Nanodiamonds in the Interstellar Medium

Although they are relatively different in band shape, infrared features around 3.4-3.5 μm in the emission spectra of HD 97048 and Elias 1 and in the absorption spectra of various dense clouds have both been attributed to diamondoid molecules/particles. This assignment is based mainly on infrared spectra of hydrogenated diamond thin films and of diamond nanocrystals of known average size. Here we present an analysis of the astrophysical implications of recently reported solid-state 2.5-12.5 μm spectra of individual diamondoid molecules, up to the size of hexamantane (C26H30). These spectra provide the first experimental measurements of the infrared frequencies of this class of molecules. In addition, laboratory gas-phase infrared emission spectra of the three smallest members of the diamondoid family are reported, as well as theoretical spectra for some larger species. The present data set allows us to relate spectral signatures to the molecular size and structure. The spectra of tetrahedral diamondoids are found to be qualitatively different from those of lower symmetry species, which possibly explains the differences between the astrophysical emission and absorption spectra. Interestingly, the 3.53 μm band is clearly observed in the spectra of these small molecular diamondoids, whereas previous studies on nanodiamond particles found this band only for species larger than ≈50 nm. Our results support the assignment of the 3.43 and 3.53 μm emission features in HD 97048 and Elias 1 to diamondoids of a few nanometers in size as well as the suggestion that smaller diamondoid molecules contribute to the 3.47 μm interstellar absorption band.

Electronic and vibrational properties of diamondlike hydrocarbons

The electronic and vibrational properties of small diamondoids are systematically investigated using an ab initio molecular orbital method. The obtained formation energies, ionization potentials, and affinity energies as well as the HOMO-LUMO gaps of the concerned diamondoids all exhibit the polymantane-order-dependent feature. We also propose the fragmentation channels with the lowest dissociation energies of cationic and neutral products, based on our calculated dissociation energies of the neutrals and positively charged diamondoids. It is, furthermore, revealed that the products arising from the dissociation of a diamondoid preferably contain some tiny hydrocarbons. In addition, the vibrational frequencies of the diamondoids are predicted, which may serve as a reference in identifying the hydrocarbon systems in the experiment.