Slow Growth Rate Research Articles

A test of island plant syndromes using resource‐use traits

AbstractDespite representing a fraction of the global terrestrial surface area, oceanic islands are disproportionately diverse in species, resulting from high rates of endemicity. Island plants are thought to share a unique phenotype—referred to as an island syndrome—which is thought to be driven by convergent evolution in response to selection by shared abiotic and biotic factors. One aspect of the island plant syndrome that has received relatively little research focus is that island plants are expected to have converged on conservative resource use associated with slow growth rates and weak competitive abilities. Here we tested whether native, woody Hawaiian plant species are phenotypically distinct—with more resource‐conservative leaf traits—compared to a globally distributed sample of continental species. Using an archipelago‐wide trait data set, we detected that on average, native Hawaiian species had lower leaf nutrient concentrations overall, and lower nutrient concentrations at high leaf mass per area, but no other phenotypic differences compared with continental plants. There was also considerable overlap in the trait spaces of native Hawaiian species and continental species. Our findings indicate that an island plant syndrome for leaf traits is not present in the Hawaiian flora, and that island species can demonstrate extensive variation in their resource‐use strategies, on a scale that is comparable with that of continental species worldwide.

Successful establishment of Anammox by cultivating residual sludge and its response to elevated nitrogen loading

Anaerobic ammonia oxidation (Anammox) process was one of the most economical nitrogen removal technology, however, the slow growth rate and the shortage of sufficient seed sludge limit its application. In this study, Anammox was successfully established using residual sludge as seed sludge, and the variation in its nitrogen removal, stability, and microbial characteristics in response to the elevated ammonia and nitrite were explored. The sludge exhibited Anammox activity on day 34, and the system was successfully established on day 67, while the hzo gene expression increased from 1.1 * 104 to 9.4 * 105 copies/mL. The established Anammox system showed good resistance to the high nitrogen shock (200–1000 mg/L), and the relative abundance of Candidatus_Kuenenia notably increased. However, when the total nitrogen in influent reached 1200 mg/L, the nitrogen removal of the Anammox system was suppressed. And Candidatus_Kuenenia abundance significantly decreased while Arenimonas increased. Residual sludge could be adopted for establishing Anammox system, and the system could be used for efficiently treating wastewater with nitrogen lower than 1000 mg/L. The result in the present study has significance to the application of Anammox process and deeply save the economic cost of seed sludge since residual sludge was widely available.

Determining SCC resistance of stainless steel claddings in high- temperature water by constant load crack growth tests and slow strain rate tests

Stress corrosion cracking (SCC) behaviors of 309 L and 308 L weld overlays are characterized in oxygen-free and oxygen-bearing high-temperature water using slow strain rate tests (SSRTs) and crack growth rate (CGR) tests with compact tension specimens. There is no apparent SCC indication on 308 L, while local SCC is observed on 309 L after SSRT in oxygen-free water. The SCC sensitivities of 308 L and 309 L increase with the increase of dissolved oxygen (DO) content, while 308 L shows relatively higher SCC resistance than 309 L in water with 200 ppb and 8000 ppb DO. SSRT and CGR test results show a similar effect of DO concentration on SCC of 309 L and 308 L. The fracture surface of 309 L exhibits extensive intergranular SCC, while 308 L shows only local interdendritic SCC after CGR tests. The crack tip blunting decreased the CGR in the low alloy steel. The highly island-shaped δ-ferrites and moderate strain hardening in 308 L contribute to its SCC resistance over 309 L.

Comparison of muscle structure and transcriptome analysis reveals the mechanism of growth variation in Yangtze sturgeon (Acipenser dabryanus)

Sturgeons display a slow growth rate and delayed initial sexual maturity, which extends the captive breeding and conservation processes. To date, few studies have revealed the molecular mechanism underlying the growth difference of sturgeons. In the present study, juvenile Yangtze sturgeons (Acipenser dabryanus) with different growth rates were selected from the same cultured pool for muscle structure, enzyme activity and comparative transcriptome analysis. Histological assays showed that the fiber diameter of the fast-growing group was significantly larger than that of the slow-growing group. The activities of four glycometabolism related enzymes, including two key rate-limiting enzymes hexokinase and pyruvate kinase, were significantly higher in fast-growing group. RNA-Seq of muscle tissues identified 7408 differentially expressed genes (DEGs), which consisted of 3637 upregulated genes and 3771 downregulated genes, in the fast-growing group vs. the slow-growing group. In the brain, a total of 12,213 unigenes were differentially expressed (6050 upregulated unigenes and 6163 downregulated unigenes) between the two groups. The expression levels of IGF1 and IGF1-binding proteins (IGFBPs) in muscle were significantly higher in the fast-growing group and might be promising candidate biomarkers for measuring growth performance in Yangtze sturgeon. Two myogenic regulatory factors (myog and myf6) were significantly upregulated, which indicated that the growth variation in juvenile Yangtze sturgeon might be partly due to the difference in the differentiation of muscle cells. In addition, pathway enrichment analysis revealed that the glycolysis and cell cycle pathways were significantly enhanced in the fast-growing groups, suggesting that they might also play important roles in the improved growth performance of A. dabryanus. Furthermore, the WGCNA as well as hub gene network analyses supported that cell cycle and gluconeogenesis might be involved in the differential growth performance of A. dabryanus. The results of this study may contribute to our understanding of the underlying molecular mechanism of growth variation in fish.

New insights into peroxide toxicology: sporulenes help Bacillus subtilis endospores from hydrogen peroxide.

The purpose of the present study was to understand the possible events involved in the toxicity of H2O2 to wild and sporulene-deficient spores of Bacillus subtilis, as H2O2 was previously shown to have deleterious effects. The investigation utilized two strains of B. subtilis, namely the wild-type PY79 (WT) and the sporulene-deficient TB10 (ΔsqhC mutant). Following treatment with 0.05% H2O2 (v/v), spore viability was assessed using a plate count assay, which revealed a significant decrease in cultivability of 80% for the ΔsqhC mutant spores. Possible reasons for the loss of spore viability were investigated with microscopic analysis, dipicholinic acid (DPA) quantification, and propidium iodide (PI) staining. Microscopic examinations revealed the presence of withered and deflated morphologies in spores of ΔsqhC mutants treated with H2O2, indicating a compromised membrane permeability. This was further substantiated by the absence of DPA and a high frequency (50-75%) of PI infiltration. The results of FAME analysis and protein profiling indicated that the potentiation of H2O2-induced cellular responses was manifested in the form of altered spore composition in ΔsqhC B. subtilis. The slowed growth rates of the ΔsqhC mutant and the heightened sporulene biosynthesis pathways in the wild-type strain, both upon exposure to H2O2, suggested a protective function for sporulenes in vegetative cells. Sporulenes serve as a protective layer for the inner membrane of spores, thus assuming a significant role in mitigating the adverse effects of H2O2 in WT B. subtilis. The toxic effects of H2O2 were even more pronounced in the spores of the ΔsqhC mutant, which lacks this protective barrier of sporulenes.

Performance of Various Chemicals Weed Management in Chickpea an Irrigated Environment

Chickpea is additional sensitive to weed competition than other crops. During early stages of crop growth competition is more severe because of slow growth rate and leaf area development. Weeds have been blamed for losses in India that range from 40 to 90 percent. Thus, adopting an effective weed management strategy is the only way to significantly increase chickpea yield. The experiment was conducted during Rabi season of 2011-12 at Agronomy Research Farm of NDUA&T, Kumarganj, Ayodhya, Uttar Pradesh. The experiment was laid out in randomized block design with fourteen weed management treatments and replicated in thrice. According to the findings, weed management methods significantly affect the number of nodules, nutrient (N, P, K) uptake, yields, and economics of chickpea over weedy check at growth stage. Maximum yield (1.72 t ha-1) and nutrient uptake (N- 63.60, P- 9.09 and K- 74.39 kg ha -1) by chickpea were recorded in weed free treatment but maximum nitrogen, phosphorous and potassium (23.22, 2.68 and 50.42 kg ha -1) uptake by weed were obtained in weedy check treatment and lowest in weed free treatment.

Small cyst size and slow growth rate are soothing features in individuals with pancreatic cysts undergoing surveillance

Small cyst size and slow growth rate are soothing features in individuals with pancreatic cysts undergoing surveillance

Food and light availability induce plastic responses in fire salamander larvae from contrasting environments.

Phenotypic plasticity has been proposed as a mechanism facilitating the colonisation and adaptation to novel environments, such as caves. However, phenotypic plasticity in subterranean environments remains largely unexplored. Here, we test for plasticity in growth and development of fire salamander larvae (Salamandra salamandra) from subterranean and surface habitats, in response to contrasting food availability and light conditions. We hypothesized that: (i) low food availability and absence of light decrease larval growth and delay metamorphosis, (ii) light conditions mediate the effects of food availability on growth and time to metamorphosis, and (iii) larval response to contrasting light and food conditions is shaped by the habitat of origin. Our study showed that reduced food availability significantly delayed metamorphosis and slowed total length and body mass growth rates, while exposure to constant darkness slowed body mass growth rate. However, larvae slowed growth rates and increased time to metamorphosis without compromising size at metamorphosis. The effect of food availability on growth and time to metamorphosis did not change under different light conditions. Fire salamanders from subterranean and surface habitats responded differently only in relation to contrasting food availability conditions. Specifically, larvae from the surface habitat grew faster in high food conditions, while growth in larvae from the subterranean habitat was not influenced by food availability. Initial size also appeared to be an influential factor, since larger and heavier larvae grew slower, metamorphosed faster, and the size advantage was maintained in newly-metamorphosed juveniles. Overall, the results of our experiment suggest that plasticity and local adaptation favor the exploitation of aquatic subterranean habitats for breeding by fire salamanders, allowing successful development even under food shortage and day-length constraints, without compromising metamorphic size. Our findings have implications for conservation because they confirm that phenotypic plasticity plays a critical role in allowing fire salamanders to overcome altered environmental conditions.

Kinetic characterization of gas mixture separation by hydrate method with 1,3-dioxolane and multi-walled carbon nanotubes complex synergistic system

In the transition to cleaner energy sources, low-carbon energy gases are expected to dominate fuel consumption. Hydrate-based gas separation technology is poised to play a key role in the decarbonization pathway for energy gases with high CO2 content. However, the current hydrate gas separation method faces challenges, including a long induction period, slow growth rate, and low separation efficiency. In light of these challenges, this paper investigates the kinetics of CH4/CO2 gas mixture hydrate formation and its separation efficiency in 1,3-dioxolane (DIOX) and multi-walled carbon nanotubes (MWCNTs). The experimental results showed that both DIOX and MWCNTs, when used in low concentrations, had a certain thermodynamic promotion effect, with DIOX showing a superior performance. DIOX outperforms MWCNTs in terms of gas consumption and induction time. whereas MWCNTs was superior to DIOX in terms of growth rate, and the purification rate at the same concentration could be increased by 32.66 %∼234.43 % compared with the DIOX system. Subsequently, this paper further investigated the effect of 300 ppm DIOX complexed with different concentrations of MWCNTs on hydrate formation and separation efficiency. DIOX was found to occupy the main promotional role in this complex system, retaining the growth acceleration stage in the DIOX system. When compounded with 200 ppm MWCNTs, the T90 time was shortened by 28.78 %∼59.29 %, and the purification rate could be increased by 86.4 % compared with a single 300 ppm DIOX system. This work provides guidance on the use and compounding of thermodynamic and kinetic promoters and aids hydrate technology where faster hydrate growth rates and more efficient gas mixture separation are required.

Effect of Working Capital, Debt Maturity, Sales, and Tangibility on Investment Efficiency

The research objective is to analyze variables such as working capital, debt maturity, sales and tangibility that affect investment efficiency. Investment is the activity of placing funds in one or more types of assets for a certain period to earn income. Factors that reflect company performance are the financial statements presented in the annual report. Underinvestment occurs when an investment company requires the use of large amounts of debt. Companies with overinvestment are companies that are in the mature stage with slow growth rates, and high cash flow. In this study the approach used is using quantitative methods. Then analyzed partial and multiple regression. The data used is secondary data. The independent variables used are working capital, debt maturity, sales, and tangibility. The dependent variable used is investment efficiency. The targeted output is to analyze whether the variables of working capital, debt maturity, sales and tangibility affect investment efficiency, so that with this research it is hoped that investment can be efficient.

Vicinity Vision Transformer.

Vision transformers have shown great success on numerous computer vision tasks. However, their central component, softmax attention, prohibits vision transformers from scaling up to high-resolution images, due to both the computational complexity and memory footprint being quadratic. Linear attention was introduced in natural language processing (NLP) which reorders the self-attention mechanism to mitigate a similar issue, but directly applying existing linear attention to vision may not lead to satisfactory results. We investigate this problem and point out that existing linear attention methods ignore an inductive bias in vision tasks, i.e., 2D locality. In this paper, we propose Vicinity Attention, which is a type of linear attention that integrates 2D locality. Specifically, for each image patch, we adjust its attention weight based on its 2D Manhattan distance from its neighbouring patches. In this case, we achieve 2D locality in a linear complexity where the neighbouring image patches receive stronger attention than far away patches. In addition, we propose a novel Vicinity Attention Block that is comprised of Feature Reduction Attention (FRA) and Feature Preserving Connection (FPC) in order to address the computational bottleneck of linear attention approaches, including our Vicinity Attention, whose complexity grows quadratically with respect to the feature dimension. The Vicinity Attention Block computes attention in a compressed feature space with an extra skip connection to retrieve the original feature distribution. We experimentally validate that the block further reduces computation without degenerating the accuracy. Finally, to validate the proposed methods, we build a linear vision transformer backbone named Vicinity Vision Transformer (VVT). Targeting general vision tasks, we build VVT in a pyramid structure with progressively reduced sequence length. We perform extensive experiments on CIFAR-100, ImageNet-1k, and ADE20K datasets to validate the effectiveness of our method. Our method has a slower growth rate in terms of computational overhead than previous transformer-based and convolution-based networks when the input resolution increases. In particular, our approach achieves state-of-the-art image classification accuracy with 50% fewer parameters than previous approaches.

Lake Evaporation and Its Effects on Basin Evapotranspiration and Lake Water Storage on the Inner Tibetan Plateau

AbstractEffects of lake evaporation (EW) on basin evapotranspiration (ETB) and lake water storage change (LWSC) at lake‐basin scale have never been reported for most basins on the inner Tibetan Plateau (IB). In this study, EW of 118 large lakes in 95 closed lake‐basins were estimated, and its effects on ETB and LWSC over 2001–2018 were examined using a derivative‐guided framework from the aspects of EW amount, rate, trend slope and inter‐annual variability. We found that EW amount has a high effect (17%) on regional ETB amount compared to the average lake area ratio (α) (∼5%), and the effect has increased significantly (2%/10 a). The spatial pattern of the effect is mainly controlled by α, and the increasing trend of α (0.6%/10 a) also dominated the increasing trend in regional ETB rate (0.30 mm/a) though with large spatial heterogeneity. Variance in α and EW rate have a minor effect (∼3%) on ETB variance, especially for the basins with lower α. The combination of quasi lake inflow (RL, 41%) and lake surface precipitation (PW, 16%) offset the depletion of EW (−43%), resulting in the surplus of regional lake water (LWSC > 0). The increase in EW mount, which is mainly from lake area expansion (90%), caused a decreasing trend in LWSC (i.e., slower growth rate) with a contribution of −59%. This suggests a negative feedback between lake area expansion and EW amount in the IB, and the feedback may continue with the predicted area increases.

Oyster reefs' control of carbonate chemistry-Implications for oyster reef restoration in estuaries subject to coastal ocean acidification.

Globally, oyster reef restoration is one of the most widely applied coastal restoration interventions. While reefs are focal points of processes tightly linked to the carbonate system such as shell formation and respiration, how these processes alter reef carbonate chemistry relative to the surrounding seawater is unclear. Moreover, coastal systems are increasingly impacted by coastal acidification, which may affect reef carbonate chemistry. Here, we characterized the growth of multiple constructed reefs as well as summer variations in pH and carbonate chemistry of reef-influenced seawater (in the middle of reefs) and ambient seawater (at locations ~50 m outside of reefs) to determine how reef chemistry was altered by the reef community and, in turn, impacts resident oysters. High frequency monitoring across three subtidal constructed reefs revealed reductions of daily mean and minimum pH (by 0.05-0.07 and 0.07-0.12 units, respectively) in seawater overlying reefs relative to ambient seawater (p < .0001). The proportion of pH measurements below 7.5, a threshold shown to negatively impact post-larval oysters, were 1.8×-5.2× higher in reef seawater relative to ambient seawater. Most reef seawater samples (83%) were reduced in total alkalinity relative to ambient seawater samples, suggesting community calcification was a key driver of modified carbonate chemistry. The net metabolic influence of the reef community resulted in reductions of CaCO3 saturation state in 78% of discrete samples, and juvenile oysters placed on reefs exhibited slower shell growth (p < .05) compared to oysters placed outside of reefs. While differences in survival were not detected, reef oysters may benefit from enhanced survival or recruitment at the cost of slowed growth rates. Nevertheless, subtidal restored reef communities modified seawater carbonate chemistry in ways that likely increased oyster vulnerability to acidification, suggesting that carbonate chemistry dynamics warrant consideration when determining site suitability for oyster restoration, particularly under continued climate change.

Overexpression of BAPT and DBTNBT genes in Taxus baccatain vitro cultures to enhance the biotechnological production of paclitaxel.

Paclitaxel is one of the most effective anticancer drugs ever developed. Although the most sustainable approach to its production is provided by plant cell cultures, the yield is limited by bottleneck enzymes in the taxane biosynthetic pathway: baccatin-aminophenylpropanoyl-13-O-transferase (BAPT) and 3'-N-debenzoyltaxol N-benzoyltransferase (DBTNBT). With the aim of enhancing paclitaxel production by overcoming this bottleneck, we obtained distinct lines of Taxus baccata in vitro roots, each independently overexpressing either of the two flux-limiting genes, BAPT or DBTNBT, through a Rhizobium rhizogenes A4-mediated transformation. Due to the slow growth rate of the transgenic Taxus roots, they were dedifferentiated to obtain callus lines and establish cell suspensions. The transgenic cells were cultured in a two-stage system and stimulated for taxane production by a dual elicitation treatment with 1 μm coronatine plus 50 mm of randomly methylated-β-cyclodextrins. A high overexpression of BAPT (59.72-fold higher at 48 h) and DBTNBT (61.93-fold higher at 72 h) genes was observed in the transgenic cell cultures, as well as an improved taxane production. Compared to the wild type line (71.01 mg/L), the DBTNBT line produced more than four times higher amounts of paclitaxel (310 mg/L), while the content of this taxane was almost doubled in the BAPT line (135 mg/L). A transcriptional profiling of taxane biosynthetic genes revealed that GGPPS, TXS and DBAT genes were the most reactive to DBTNBT overexpression and the dual elicitation, their expression increasing gradually and constantly. The same genes exhibited a pattern of isolated peaks of expression in the elicited BAPT-overexpressing line.

Aberrant Right Subclavian Artery: Demographics, Morphological Features and Follow up CT Scans Dynamics.

Introduction: Aberrant right subclavian artery (ARSA) is the most common of the aortic arch anomalies, occurring in .5% to 1% of the population. There is no standardized follow up protocol, especially in the asymptomatic cases. The purpose of the present study was to evaluate the natural history of ARSA and the role of serial CT scans. Methods: This is a single-center retrospective study of patients with ARSA depicted on chest computed tomography (CT) scans between February 2013 and July 2022. Data were collected from their medical records. Measurements of the aorta at different segments including the aortic diameter at the orifice of ARSA, and ARSA at ostium followed by 1cm intervals were collected, as well as for follow-up CT scans. Results: 65 patients were diagnosed with ARSA, 70.8% of whom were women. The average age for the cohort was 58.569 ± 16.99years. The median follow up time was 4years (range 0-10years), KM estimated survival after ARSA diagnosis at 1 and 5years as 97% and 93%, respectively. Nineteen patients had a second CT scan and were included in the morphological CT dynamic analysis, on average of 29 ± 27months apart (range 7-108). The mean ARSA diameter at origin was larger in the second scan 16.91 ± 4.31mm compared to the initial scan 16.31 ± 4.96mm, (P = .04).The mean aortic arch diameter in the first and second CT were 28.54 ± 4.24 and 29.64 ± 5.14 (P = .10), respectively. All other measurements did not disclose any significant enlargement over time. Conclusions: Our cohort demonstrate a benign natural history of ARSA with slow growth rates. However, due to our small sample size we can't draw a clinically sound recommendation on the need for imaging follow up, and further larger cohort with longer follow up interval are required.

Phytomediated selenium nanoparticles and light regimes elicited in vitro callus cultures for biomass accumulation and secondary metabolite production in Caralluma tuberculata.

Caralluma tuberculata holds significant importance as a medicinal plant due to its abundance of bioactive metabolites, which offer a wide range of therapeutic potentials. However, the sustainable production of this plant is challenged by overexploitation, changes in natural conditions, slow growth rate, and inadequate biosynthesis of bioactive compounds in wild populations. Therefore, the current study was conducted to establish an in vitro based elicitation strategy (nano elicitors and light regimes) for the enhancement of biomass and production of secondary metabolites. Garlic clove extract was employed as a stabilizing, reducing, or capping agent in the green formulation of Selenium nanoparticles (SeNPs) and various physicochemical characterization analyses such as UV visible spectroscopy, scanning electron microscopy (SEM), energy dispersive X-Ray (EDX) Spectroscopy, fourier transform infrared (FTIR) spectroscopy and X-ray diffraction (XRD) were performed. Furthermore, the effects of phytosynthesized SeNPs at various concentrations (0, 50, 100, 200, and 400 µg/L on callus proliferation and biosynthesis of medicinal metabolites under different light regimes were investigated. Cultures grown on Murashige and Skoog (MS) media containing SeNPs (100 µg/L), in a dark environment for two weeks, and then transferred into normal light, accumulated maximum fresh weight (4,750 mg/L FW), phenolic contents (TPC: 3.91 mg/g DW), flavonoid content (TFC: 2.04 mg/g DW) and 2,2-Diphenyl-1-picrylhydrazyl (DPPH) antioxidant activity (85%). Maximum superoxide dismutase (SOD: 4.36 U/mg) and peroxide dismutase activity (POD: 3.85 U/mg) were determined in those cultures exposed to SeNPs (100 µg/L) under complete dark conditions. While the callus cultures proliferate on media augmented with SeNPs (200 µg/L) and kept under dark conditions for two weeks and then shifted to normal light conditions exhibited the highest catalase (CAT: 3.25 U/mg) and ascorbate peroxidase (APx: 1.93 U/mg) activities. Furthermore, LC-ESI-MS/MS analysis confirmed the effects of SeNPs and light conditions that elicited the antidiabetic metabolites (cumarins, gallic acid, caffeic acid, ferulic acid, catechin, querctin and rutin). This protocol can be scaled up for the industrial production of plant biomass and pharmacologically potent metabolites using in vitro callus cultures of C. tuberculata.

Genetic Variations Among Families of Selectively Bred &lt;i&gt;Macrobrachium rosenbergii&lt;/i&gt; (De Man) By RAPD-PCR Analysis

Giant freshwater prawn, Macrobrachium rosenbergii is an important freshwater crustacean widely cultured in several countries including India. Of late, its production has come down due to slow growth rate and disease occurrences. The ICAR-Central Institute of Freshwater Aquaculture (ICAR-CIFA), Bhubaneswar in collaboration with the WorldFish, Malaysia has initiated a selective breeding programme for growth improvement of this species. In the present study, two groups of families (I. six numbers of families for growth and II. six numbers of families for disease resistance) were selected for experimentation from the families produced in the fourth generation of selection programme. Each group consisted of two extreme sub-groups of three families in each with higher and lower growth (based on weight) under group I and, susceptible and resistant families (based on larval survival following challenge with Vibrio harveyi) under group II. RAPD- PCR was used to evaluate the genetic variations between and within groups separately. Twelve selected decamer primers were used to amplify DNA fragments of three individuals of each family and data were analyzed by POPGENE version 1.31 software. In group I, a total of 102 bands were scored by the primers out of which 41 bands (40.19%) found to be polymorphic. Genetic diversity within the group varied from 0.0272  0.0965 to 0.0463  0.1316. UPGMA dendrogram of this group based on Nei’s genetic distance showed that families 5 (low growth family 2) and 6 (low growth family 3) are distantly related to high growth families. In the second group of disease resistance, 35 bands (36.46%) were found to be polymorphic out of 96 bands scored. Genetic diversity varied between 0.0301 ± 0.0957 to 0.0438 ± 0.1381 within this group. UPGMA dendrogram showed that families 1 (susceptible group 1) and 2 (susceptible group 2) are distantly related to three resistant families. Thus, the present results showed the existence of genetic variations in both growth and disease resistance traits that could be utilized in the selective breeding programme in M. rosenbergii.

Extra-urogenital infection by Mycoplasma hominis in transplant patients: two case reports and literature review

BackgroundMycoplasma hominis is a facultative anaerobic bacterium commonly present in the urogenital tract. In recent years, M. hominis has increasingly been associated with extra-urogenital tract infections, particularly in immunosuppressed patients. Detecting M. hominis in a diagnostic laboratory can be challenging due to its slow growth rate, absence of a cell wall, and the requirements of specialized media and conditions for optimal growth. Consequently, it is necessary to establish guidelines for the detection of this microorganism and to request the appropriate microbiological work-up of immunosuppressed patients.Case PresentationWe hereby present two cases of solid organ transplant patients who developed M. hominis infection. Microscopic examination of the bronchial lavage and pleural fluid showed no microorganisms. However, upon inoculating the specimens onto routine microbiology media, the organism was successfully identified and confirmation was performed using 16S rDNA sequencing. Both patients received appropriate treatment resulting in the resolution of M. hominis infection.ConclusionsThe prompt detection of M. hominis in a clinical specimen can have a significant impact on patient care by allowing for early intervention and ultimately resulting in more favorable clinical outcomes, especially in transplant patients.

Origins of slow growth on the crocodilian stem lineage

Crocodilians grow slowly and have low metabolic rates similar to other living reptiles, but palaeohistology indicates that they evolved from an ancestor with higher growth rates.1,2,3,4,5 It remains unclear when slow growth appeared in the clade due to the sparse data on key divergences among early Mesozoic members of their stem lineage. We present new osteohistological data from a broad sample of early crocodylomorphs, evaluated in a phylogenetic context alongside other pseudosuchians. We find that the transition to slow-growing bone types during mid-late ontogeny occurred around the origin of Crocodylomorpha during the Late Triassic. Earlier-diverging pseudosuchians had high maximum growth rates, as indicated by the presence of woven bone during middle and (sometimes) late ontogeny.6,7,8,9 Large-bodied pseudosuchians in particular exhibit some of the fastest-growing bone types, giving evidence for prolonged, rapid growth. By contrast, early-branching crocodylomorphs, including a new large-bodied taxon, had slow maximum rates of bone deposition, as evidenced by the presence of predominantly parallel-fibered or lamellar bone tissue during middle-late ontogeny. Late Triassic crocodylomorphs show skeletal anatomy consistent with "active" terrestrial habits,10,11,12 and their slow growth rates reject hypotheses linking this transition with sedentary, semiaquatic lifestyles or sprawling posture. Faster-growing pseudosuchian lineages go extinct in the Triassic, whereas slow-growing crocodylomorphs do not. This contrasts with the Jurassic radiation of fast-growing dinosaurs on the bird-stem lineage,13 suggesting that the End-Triassic mass extinction initiated a divergent distribution of growth strategies that persist in present-day archosaurs.

"Candidatus Subterrananammoxibiaceae," a New Anammox Bacterial Family in Globally Distributed Marine and Terrestrial Subsurfaces.

Bacteria specialized in anaerobic ammonium oxidation (anammox) are widespread in many anoxic habitats and form an important functional guild in the global nitrogen cycle by consuming bio-available nitrogen for energy rather than biomass production. Due to their slow growth rates, cultivation-independent approaches have been used to decipher their diversity across environments. However, their full diversity has not been well recognized. Here, we report a new family of putative anammox bacteria, "Candidatus Subterrananammoxibiaceae," existing in the globally distributed terrestrial and marine subsurface (groundwater and sediments of estuary, deep-sea, and hadal trenches). We recovered a high-quality metagenome-assembled genome of this family, tentatively named "Candidatus Subterrananammoxibius californiae," from a California groundwater site. The "Ca. Subterrananammoxibius californiae" genome not only contains genes for all essential components of anammox metabolism (e.g., hydrazine synthase, hydrazine oxidoreductase, nitrite reductase, and nitrite oxidoreductase) but also has the capacity for urea hydrolysis. In an Arctic ridge sediment core where redox zonation is well resolved, "Ca. Subterrananammoxibiaceae" is confined within the nitrate-ammonium transition zone where the anammox rate maximum occurs, providing environmental proof of the anammox activity of this new family. Phylogenetic analysis of nitrite oxidoreductase suggests that a horizontal transfer facilitated the spreading of the nitrite oxidation capacity between anammox bacteria (in the Planctomycetota phylum) and nitrite-oxidizing bacteria from Nitrospirota and Nitrospinota. By recognizing this new anammox family, we propose that all lineages within the "Ca. Brocadiales" order have anammox capacity. IMPORTANCE Microorganisms called anammox bacteria are efficient in removing bioavailable nitrogen from many natural and human-made environments. They exist in almost every anoxic habitat where both ammonium and nitrate/nitrite are present. However, only a few anammox bacteria have been cultured in laboratory settings, and their full phylogenetic diversity has not been recognized. Here, we present a new bacterial family whose members are present across both the terrestrial and marine subsurface. By reconstructing a high-quality genome from the groundwater environment, we demonstrate that this family has all critical enzymes of anammox metabolism and, notably, also urea utilization. This bacterium family in marine sediments is also preferably present in the niche where the anammox process occurs. These findings suggest that this novel family, named "Candidatus Subterrananammoxibiaceae," is an overlooked group of anammox bacteria, which should have impacts on nitrogen cycling in a range of environments.