We study the transmission and reflection properties of a single-photon pulse in a one-dimensional waveguide side coupled with a Jaynes-Cummings system, namely, a multi-cavity with an embedded Rydberg atom. A Single-photon pulse is applied to tune the atoms energy spectrum, and varying it can bring the atomic qubit transition on or off-resonance for the cavity. The transmission and reflection behavior are systematically explored by a real-space model Hamiltonian and we find that the coupling strength between the waveguide and the side optical cavity exerts a tremendous impact on it. The influence of cavity and atomic dissipations and the incident pulse width on the transport properties of the single-photon is also investigated simultaneously. Based on these phenomena, we point out the possibility of utilizing this system as a single-photon transport in practice and has potential applications in quantum information.
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