Significant Differences In Diversity Research Articles

Field Fungal Diversity in Freshly Harvested Japonica Rice

Rice is a major food crop in China and Japonica rice production in Heilongjiang Province ranks No.1 in total annual rice production in the country. Rice is prone to invasion by fungi and mycotoxins produced by the fungi are proven to be serious threats to human health. The objective of the present study was to investigate fungal diversity of freshly harvested rice in the four main cultivation regions of Heilongjiang Province in order to find the difference of dominant fungi among the four regions. Through high throughput sequencing we detected Ascomycota accounts for absolute dominant phylum; Dothideomycetes, Sordariomycetes, Tremellomycetes, Microbotryomycetes, and Eurotiomycetes were dominant classes; Capnodiales, Hypocreales, and Pleosporales were the main orders; Cladosporiaceae, Pleosporaceae, Nectriaceae, Clavicipitaceae, Tremellaceae, Phaeosphaeriaceae, Trimorphomycetaceae, Sporidiobolaceae, Bionectriaceae, and Trichocomaceae were major family; Cladosporium, Epicoccum, Fusarium, and Alternaria were the most abundant phylotypes at genus level; Epicoccum nigrum, Gibberella zeae, and Fusarium proliferatum were the dominant fungal species. Great fungal diversity was observed in the rice samples harvested in the four major Japonica rice-growing regions in Heilongjiang province. However, no significant difference in diversity was observed among the four regions, likely due to the relatively close geographical proximity leading to very similar climatic conditions. Since some of the fungal species produce mycotoxins, it is necessary to take precautions to ensure the rice is stored under safe conditions to prevent the production of mycotoxins. This is the first report on investigation of field fungal diversity in freshly harvested Japonica rice in Heilongjiang Province in China.

The Rice Leaf Microbiome Has a Conserved Community Structure Controlled by Complex Host-Microbe Interactions

The composition, structure and functional profile of crop microbial communities are shaped by interactions between the host, microbes and the environment, however, their relative contribution is mostly unknown. Here, we define the role of each factor in the leaf microbial community across 3,024 rice accessions from field trials in China and the Philippines using metagenomics. Despite significant differences in diversity between environments, the structure and metabolic profiles of the microbiome appear to be conserved, suggesting that microbiomes converge onto core functions. Furthermore, we identified microbial hubs that regulate the network structure of the microbiome. We detected rice genomic regions controlling the abundance of these hubs, enriched for processes involved in stress responses and carbohydrate metabolism. We functionally validated the importance of these processes in plants with different accumulation of cellulose and salicylate. By identifying key factors that govern microbiome composition, our study opens the door to designing future cropping systems.

How many came home? Evaluating ex situ conservation of green turtles in the Cayman Islands.

Ex situ management is an important conservation tool that allows the preservation of biological diversity outside natural habitats while supporting survival in the wild. Captive breeding followed by re-introduction is a possible approach for endangered species conservation and preservation of genetic variability. The Cayman Turtle Centre Ltd was established in 1968 to market green turtle (Chelonia mydas) meat and other products and replenish wild populations, thought to be locally extirpated, through captive breeding. We evaluated the effects of this re-introduction programmme using molecular markers (13 microsatellites, 800-bp D-loop and simple tandem repeat mitochondrial DNA sequences) from captive breeders (N=257) and wild nesting females (N=57) (sampling period: 2013-2015). We divided the captive breeders into three groups: founders (from the original stock), and then two subdivisions of F1 individuals corresponding to two different management strategies, cohort 1995 ("C1995") and multicohort F1 ("MCF1"). Loss of genetic variability and increased relatedness was observed in the captive stock over time. We found no significant differences in diversity among captive and wild groups, and similar or higher levels of haplotype variability when compared to other natural populations. Using parentage and sibship assignment, we determined that 90% of the wild individuals were related to the captive stock. Our results suggest a strong impact of the re-introduction programmme on the present recovery of the wild green turtle population nesting in the Cayman Islands. Moreover, genetic relatedness analyses of captive populations are necessary to improve future management actions to maintain genetic diversity in the long term and avoid inbreeding depression.

The differential responses of woody and herbaceous climbers to selective logging and supporter structure in a temperate forest of Xiaolong Mountain, China

Knowledge of the responses of climbing plants to disturbance is important in understanding the ecology of climber but still lacking a general agreement. The present study quantified the diversity and abundance of climbing plants and self-supporting woody plants in 15 selectively logged and 11 unlogged forest stands in Xiaolong Mountain of Qinling Mountains, and further compared the difference of lianas and vines in response to selective logging and the structure of self-supporting woody plants. A total of 315 liana individuals belonging to 14 species, 11 genera and 9 families and 232 vine individuals belonging to 13 species, 12 genera, and 9 families were identified in the investigated stands. There were significant differences in diversity and abundance of lianas between the logged and unlogged stands, whereas vines had no apparent differences. Twining was the most common climbing mechanism used both by lianas and vines. Liana diversity showed positive relationship with tree abundance, but vine diversity was positively related with shrub diversity. The results suggest that lianas and vines respond differently to forest abiotic and biotic environments.

Gut microbiota analysis and its significance in vasovagal syncope in children.

Background:Vasovagal syncope (VVS) is common in children and greatly affect both physical and mental health. But the mechanisms have not been completely explained. This study was designed to analyze the gut microbiota in children with VVS and explore its clinical significance.Methods:Fecal samples from 20 VVS children and 20 matched controls were collected, and the microbiota were analyzed by 16S rRNA gene sequencing. The diversity and microbiota compositions of the VVS cases and controls were compared with the independent sample t test or Mann-Whitney U test. The correlation between the predominant bacteria and clinical symptoms was analyzed using Pearson or Spearman correlation test.Results:No significant differences in diversity were evident between VVS and controls (P > 0.05). At the family level, the relative abundance of Ruminococcaceae was significantly higher in VVS children than in controls (median [Q1, Q3]: 22.10% [16.89%, 27.36%] vs. 13.92% [10.31%, 20.18%], Z = −2.40, P < 0.05), and LEfSe analysis revealed Ruminococcaceae as a discriminative feature (linear discriminant analysis [LDA] score > 4, P < 0.05). The relative abundance of Ruminococcaceae in VVS patients was positively correlated with the frequency of syncope (r = 0.616, P < 0.01). In terms of its correlation with hemodynamics, we showed that relative abundance of Ruminococcaceae was negatively correlated with the systolic and diastolic pressure reduction at the positive response in head-up tilt test (HUTT; r = −0.489 and −0.448, all P < 0.05), but was positively correlated with the mean pressure drop and decline rate (r = 0.489 and 0.467, all P < 0.05) as well as diastolic pressure drop and decline rate at the HUTT positive response (r = 0.579 and 0.589, all P < 0.01) in VVS patients.Conclusion:Ruminococcaceae was the predominant gut bacteria and was associated with the clinical symptoms and hemodynamics of VVS, suggesting that gut microbiota might be involved in the development of VVS.

Diversity analysis of the rhizospheric and endophytic bacterial communities of Senecio vulgaris L. (Asteraceae) in an invasive range.

Increasing evidence has confirmed the importance of plant-associated bacteria for plant growth and productivity, and thus it is hypothesized that interactions between bacteria and alien plants might play an important role in plant invasions. However, the diversity of the bacterial communities associated with invasive plants is poorly understood. We therefore investigated the diversity of rhizospheric and endophytic bacteria associated with the invasive annual plant Senecio vulgaris L. (Asteraceae) based on 16S rRNA gene data obtained from 57 samples of four Senecio vulgaris populations in a subtropical mountainous area in central China. Significant differences in diversity were observed between plant compartments. Specifically, the rhizosphere harbored many more bacterial operational taxonomic units and showed higher alpha diversity than the leaf and root endospheres. The relative abundance profiles of the bacterial community composition differed substantially between the compartments and populations, especially at the phylum and family levels. However, the top five phyla (Proteobacteria, Firmicutes, Bacteroidetes, Actinobacteria, and Acidobacteria) accounted for more than 90% of all the bacterial communities. Moreover, similar endophytic communities with a shared core set of bacteria were observed from different Senecio vulgaris populations. Heavy-metal-resistant, phosphate-solubilizing bacteria (Brevundimonas diminuta), nitrogen-fixing bacteria (Rhizobium leguminosarum), and cold-resistant bacteria (Exiguobacterium sibiricum) were present in the endosphere at relatively high abundance. This study, which reveals the structure of bacterial communities and their putative function in invasive Senecio vulgaris plants, is the first step in investigating the role of plant–bacteria interactions in the invasion of this species in China.

Composition and maternal origin of the neonatal oral cavity microbiota

ABSTRACTBackground: The origin of the initial oral microbiota in neonates still remains poorly understood.Objective: The aim of this study was to understand how the maternal microbiota contributes to the initial neonatal oral microbiota.Design: Twelve mother-neonate pairs with samples from the maternal oral mucosa, uterine cervix and placenta and the neonatal oral cavity immediately after birth were studied. The microbiota composition and diversity were characterized by 16S rRNA gene sequencing (V3-V4 region). The microbiota analyses and comparisons were carried out with Calypso software version 8.1 and with SourceTracker 1.0.1.Results: Samples from the neonatal oral cavity showed moderately high bacterial diversity and low richness. The neonatal oral cavity microbiota seems to share features mainly with the microbes detected in the placenta, followed by the cervical microbiota and the maternal oral microbiota. No statistically significant differences in diversity (Shannon index, p = 0.14), richness (Chao1, p = 0.53) or in microbial composition were observed according to delivery mode.Conclusion: The neonatal oral cavity microbiota is not significantly modulated by the birth canal or maternal oral microbiota but displays clear associations with microbes in the placenta. These results suggest that the neonatal oral microbiota may have a prenatal origin.

Genome-wide Scan Using DArT Markers for Selection Footprints in Six-rowed Naked Barley from the Tibetan Plateau

As one of the world’s earliest domesticated crops, barley is a model species for the study of evolution and domestication. Domestication is an evolutionary process whereby a population adapts, through selection; to new environments created by human cultivation. We describe the genome-scanning of molecular diversity to assess the evolution of barley in the Tibetan Plateau. We used 667 Diversity Arrays Technology (DArT) markers to genotype 185 barley landraces and wild barley accessions from the Tibetan Plateau. Genetic diversity in wild barley was greater than in landraces at both genome and chromosome levels, except for chromosome 3H. Landraces and wild barley accessions were clearly differentiated genetically, but a limited degree of introgression was still evident. Significant differences in diversity between barley subspecies at the chromosome level were observed for genes known to be related to physiological and phenotypical traits, disease resistance, abiotic stress tolerance, malting quality and agronomic traits. Selection on the genome of six-rowed naked barley has shown clear multiple targets related to both its specific end-use and the extreme environment in Tibet. Our data provide a platform to identify the genes and genetic mechanisms that underlie phenotypic changes, and provide lists of candidate domestication genes for modified breeding strategies.

Changes in the Microbial Community Structure and Soil Chemical Properties of Vertisols Under Different Cropping Systems in Northern China

The cropping system changes the soil physical and chemical properties and directly influences the microbiome composition and diversity. Microflora are important drivers of the nutrient cycling process and can affect soil fertility, plant productivity and environmental sustainability. Here, the soil fertility and microbial community changes in four soybean-containing plant systems were studied for 12 years. Amplification sub-sequencing techniques were used to assess the differences in the soil community structure under different cropping systems and identified significant positive and negative fertility factors. The lowest effective P, Cu and Mn contents were obtained with the fallow-soybean planting mode. The soybean continuous cropping pattern yielded significantly increased effective organic matter (OM), significantly higher N, K, Mn and Fe contents and a lower effective P content. The wheat-soybean rotation cropping pattern produced the highest effective P and Cu contents and significantly lower OM and effective N and Fe contents, whereas the corn-soybean rotation planting system yielded the highest pH and significantly lower K and Zn contents (P<0.05). Different cropping systems yielded microbial communities with significant differences in diversity and relative abundances. Significantly higher microbial diversity was observed with the fallow-soybean planting mode, which showed significantly higher relative abundances of Chloroflexi, Verrucomicrobia, Nitrospirae and Bacteroidetes and a significantly lower relative abundance of Actinobacteria. The soybean continuous cropping pattern yielded significantly higher relative abundances of Proteobacteria, Bacteroidetes, and Actinobacteria and significantly lower relative abundances of Acidobacteria and Planctomycetes, whereas the wheat-soybean rotation cropping pattern generated significantly higher relative abundances of Planctomycetes, Gemmatimonadetes, candidate division WPS-1 and Armatimonadetes compared with the other planting systems. The fungi in all the samples were mainly distributed in Ascomycota, Basidiomycota and Zygomycota, and these groups reached relative abundances as high as 90%. The wheat-soybean rotation cropping pattern produced a significantly higher relative abundance of Ascomycota, and the fallow-soybean planting mode yielded a significantly higher relative abundance of Zygomycota. An extremely low soil fertility index greatly affects the microbial community structure, and the effective P, Cu, Mn, and K contents of black soil are environmental factors closely related to microbial diversity. These findings are of great significance for protecting the ecological environment.

Changes in the Microbial Community of Pinus arizonica Saplings After Being Colonized by the Bark Beetle Dendroctonus rhizophagus (Curculionidae: Scolytinae)

The death of trees is an ecological process that promotes regeneration, organic matter recycling, and the structure of communities. However, diverse biotic and abiotic factors can disturb this process. Dendroctonus bark beetles (Curculionidae: Scolytinae) are natural inhabitants of pine forests, some of which produce periodic outbreaks, killing thousands of trees in the process. These insects spend almost their entire life cycle under tree bark, where they reproduce and feed on phloem. Tunneling and feeding of the beetles result in the death of the tree and an alteration of the resident microbiota as well as the introduction of microbes that the beetles vector. To understand how microbial communities in subcortical tissues of pines change after they are colonized by the bark beetle Dendroctonus rhizophagus, we compare both the bacterial and fungal community structures in two colonization stages of Pinus arizonica (Arizona pine) employing Illumina MiSeq. Our findings showed significant differences in diversity and the dominance of bacterial community in the two colonization stages with Shannon (P = 0.004) and Simpson (P = 0.0006) indices, respectively, but not in species richness with Chao1 (P = 0.19). In contrast, fungal communities in both stages showed significant differences in species richness with Chao1 (P = 0.0003) and a diversity with Shannon index (P = 0.038), but not in the dominance with the Simpson index (P = 0.12). The β-diversity also showed significant changes in the structure of bacterial and fungal communities along the colonization stages, maintaining the dominant members in both cases. Our results suggest that microbial communities present in the Arizona pine at the tree early colonization stage by bark beetle change predictably over time.

The influence of cultivation frequency on weed species composition and diversity in flood recession farming in the Okavango Delta, Botswana

IntroductionFlood recession farming, locally known as molapo farming, is an important livelihood activity for the subsistence farming community around the Okavango Delta. The study was aimed at investigating the influence of cultivation frequency on non-crop species composition. It was carried out in the peripheral settlements of Shorobe, Makalamabedi and Lake Ngami.MethodsVegetation sampling was conducted from March to April 2016 in 36 fields of varying historical cultivation frequencies. The cultivation frequencies were 5, 10 and 15 years with an uncropped control site. Sampling was done in 1-m2 quadrats placed 10 m apart along a line transect. Shannon’s diversity and equitability indices were used to compare diversity for each cultivation frequency within and across the study sites. The Kruskal–Wallis test was used to investigate significant differences in diversity between cultivation frequencies. Rank of abundance was used to determine the association of weeds with the cultivation frequencies.ResultsCultivation frequency did not influence species diversity (p > 0.05) at either Lake Ngami or Shorobe. Species evenness was significantly different (p < 0.05) between the cultivation frequencies at Shorobe, but not at either Makalamabedi or Lake Ngami. There was a significant difference (p < 0.05) in diversity indexes across the four cultivation frequencies. The 5-year frequency recorded the highest median score (Md = 1.352) while the 15-year frequency recorded the lowest median score (Md = 1.035). Corchorus tridens was the most abundant non-crop species at the 5- and 15-year frequencies. Cynodon dactylon was most abundant in the 10-year frequency while Cyperus esculentus was most abundant in uncropped fields.ConclusionsCultivation frequency influenced weed species diversity and composition in flood recession farming. Flood recession farming fields were dominated by common weed species which are also troublesome in dryland arable farming. Uncropped sites were composed of wetland species that tolerate some dry periods or seasonal flood plains.

Paired analysis of the microbiota between surface tissue swabs and biopsies from pediatric patients undergoing adenotonsillectomy

IntroductionCulture-independent methods, based on bacterial 16 S rRNA gene sequencing, have been used previously to investigate the adenotonsillar microbiota. However, these studies have focused on a single sampling site (usually a surface swab). We aimed to investigate potential differences in adenotonsillar microbiota according to sampling location, both on and within the adenoids and palatine tonsils. MethodsPediatric patients (n = 28, mean age five years) undergoing adenotonsillectomy were recruited for this study. At the time of surgery, a mucosal adenoid surface swab and an adenoid tissue biopsy was collected. Immediately following surgery, the crypts of the right and left tonsils were swabbed, and a surface and core tissue sample from the right tonsil were also collected. Bacterial 16 S rRNA gene-targeted amplicon sequencing was used to determine the bacterial composition of the collected samples. ResultsThere was no significant difference in diversity or composition of the adenoid microbiota based on sampling site. However, the Shannon–Wiener and Inverse-Simpson diversity indices differed significantly (p < 0.05) between the microbial communities of the three different tonsil sampling sites. There was a higher average relative abundance of members from the genera Streptococcus, Actinobacillus, and Neisseria in the tonsil crypts when compared with surface and core tonsil tissue samples. ConclusionOur results indicate that there is variation in bacterial diversity and composition based on sampling sites in the tonsils but not the adenoids. The difference in microbiota between the surface and the tissue may have implications for our understanding of the pathogenesis of recurrent tonsillitis and have treatment implications.

Taxonomic and phylogenetic diversity of vascular plants at Ma'anling volcano urban park in tropical Haikou, China: Reponses to soil properties.

Anthropogenic processes and socio-economic factors play important roles in shaping plant diversity in urban parks. To investigate how plant diversity of Ma’ anling urban volcano park in Hainan Province, China respond to these factors, we carried out a field investigation on the taxonomic and phylogenetic diversity of vascular plants and soil properties in this area. We found 284 species of vascular plants belonging to 88 families and 241 genera, which included 194 native species, 23 invasive species, 31 naturalized species, 40 cultivars, and 4 rare / endangered plant species. Tree composition and richness significantly varied between different vegetation formations (plantation, secondary forest, and abandoned land). Plant species richness and community composition were significantly affected by elevation (El), soil water content (WC), total soil nitrogen (TN) and soil organic matter (SOM). There were significant diversity differences between plantations and abandoned lands, but not between the plantations and secondary forests. The flora in the study site was tropical in nature, characterized by pantropic distributions. Compared to adjacent areas, floristic composition in the study site was most similar to that of Guangdong, followed by that of Vietnam. Our study revealed the diversity patterns of volcanic plants and provided the basis for future planning of plant conservation, such as preserving plant species, maintaining plant habitats, and coordinating plant management in this region.

Indicator species and community structure of gasteroid fungi (Agaricomycetes, Basidiomycota) in ecosystems of the Atlantic Forest in southern Brazil

Fungi are import organisms in tropical ecosystems. However, there is little information about their community structure and dynamics in these environments. This study aimed to evaluate the structure and presence of indicator species of epigeous Gasteromycetes in distinct ecosystems (lowland rain forest, Araucaria forest, and semideciduous forest) of the Atlantic Forest in southern Brazil. Samplings were carried out during the summer and autumn of 2014 and 2015 involving ten transects (50 × 4 m). Forty-seven species were identified, of which 48% belong to Geastrum. An ANOVA showed a significant difference in diversity of gasteroid fungi among the forest types and the two evaluated seasons. An ordination nonparametric analysis to assess the composition of species of the forest types revealed a stress value of 0.12. In total, 13 species were classified as indicator species by an IndVal analysis. Our results reject our hypothesis, which we infer, that a greater diversity of gasteroid fungi would be in areas of lowland rain forest.In this sense, leading us to rethinking techniques and new approaches for ecological studies of gasteroid fungi in Brazil. However, the study underscores the importance of understanding the relationships of fungal communities in forest environments.

Changes in alpine vegetation over 50 years in the Western Tatras (Slovakia)

Abstract This paper examines changes in alpine vegetation over 50 years in the Western Tatras part of the Western Carpathians Mountains in Slovakia. We focus on the following most widespread vegetation types: subalpine to subnival grasslands (alliance Juncion trifidi Krajina 1933), snowbed vegetation (alliance Festucion picturatae Krajina 1933) and dwarf-shrub vegetation (alliances Loiseleurio-Vaccinion Br.-Bl. in Br.-Bl. et Jenny 1926 and Vaccinion myrtilli Krajina 1933). The historical 1971–1977 sampling dataset was re-sampled in 2016–2017 and our research is based on a comparison of 40 pairs of these relevés. Herein, we studied (i) changes in species frequencies; (ii) changes in phytodiversity and site conditions using estimates of Ellenberg’s eco-indices and (iii) comparison of historical and current relevés over time using the nonmetric multidimensional scaling gradient analysis (NMDS) ordination method. The frequency curves reveal differences; especially in the most frequent species at 37.5−80%, which reach higher values in the current data. The higher 7.5−25% value of medium-frequent species in the historical relevés indicates progressive homogenisation of the examined vegetation. In addition, the Shannon-Wiener index of individual vegetation types revealed no significant differences in diversity or average number of species. The historical relevés included 75 species while 74 were confirmed in the current data. Statistically significant differences were determined in light factor for all three vegetation groups. This was due to the retreat of some light-demanding species. While NMDS indicated changes in Festucion and Vaccinion relevés over time, the Juncion group relevés did not follow this trend, thus confirming their high stability. The observed changes between current and historical data are attributed to changes in climate and altered land use with the cessation of grazing.

Effect of the natural arsenic gradient on the diversity and arsenic resistance of bacterial communities of the sediments of Camarones River (Atacama Desert, Chile).

Arsenic (As), a highly toxic metalloid, naturally present in Camarones River (Atacama Desert, Chile) is a great health concern for the local population and authorities. In this study, the taxonomic and functional characterization of bacterial communities associated to metal-rich sediments from three sites of the river (sites M1, M2 and M3), showing different arsenic concentrations, were evaluated using a combination of approaches. Diversity of bacterial communities was evaluated by Illumina sequencing. Strains resistant to arsenic concentrations varying from 0.5 to 100 mM arsenite or arsenate were isolated and the presence of genes coding for enzymes involved in arsenic oxidation (aio) or reduction (arsC) investigated. Bacterial communities showed a moderate diversity which increased as arsenic concentrations decreased along the river. Sequences of the dominant taxonomic groups (abundances ≥1%) present in all three sites were affiliated to Proteobacteria (range 40.3–47.2%), Firmicutes (8.4–24.8%), Acidobacteria (10.4–17.1%), Actinobacteria (5.4–8.1%), Chloroflexi (3.9–7.5%), Planctomycetes (1.2–5.3%), Gemmatimonadetes (1.2–1.5%), and Nitrospirae (1.1–1.2%). Bacterial communities from sites M2 and M3 showed no significant differences in diversity between each other (p = 0.9753) but they were significantly more diverse than M1 (p<0.001 and p<0.001, respectively). Sequences affiliated with Proteobacteria, Firmicutes, Acidobacteria, Chloroflexi and Actinobacteria at M1 accounted for more than 89% of the total classified bacterial sequences present but these phyla were present in lesser proportions in M2 and M3 sites. Strains isolated from the sediment of sample M1, having the greatest arsenic concentration (498 mg kg-1), showed the largest percentages of arsenic oxidation and reduction. Genes aio were more frequently detected in isolates from M1 (54%), whereas arsC genes were present in almost all isolates from all three sediments, suggesting that bacterial communities play an important role in the arsenic biogeochemical cycle and detoxification of arsenical compounds. Overall, results provide further knowledge on the microbial diversity of arsenic contaminated fresh-water sediments.

Effects of germplasm and host tree trunk on endophytic fungal communities in epiphytic Dendrobium catenatum

In order to investigate the effects of germplasm and host tree trunk on endophytic fungal communities in epiphytic Dendrobium catenatum, a total of 3 835 isolates were recovered from roots, stems and leaves of four D. catenatum germplasms attached to one kind of host tree trunk and one germplasm attached to four kinds of epiphyte-host tree trunks. A total of 152 taxa were identified and classified based on the fungal cultural characteristics and phylogenetic analyses of ITS sequences. The taxa were assigned to 60 genera, 35 families, 21 orders and 5 classes of 2 phyla. The results indicated that D. catenatum cultivated in stereo cultivation harbor variety of fungi. The dominant fungal groups were different between Lin'an and Yiwu. Moreover, several groups showed geographical specificity, such as Arthrinium, Coniochaeta, Fusarium, Neofusicoccum and Zopfiella only dominating in Panshan of Lin'an, while Alternaria, Bjerkandera, Cercophora, Nigrospora and Trichoderma only dominating in Shangxi of Yiwu. There was no significant difference in diversity or species richness of endophytic fungi neither among germplasm nor host tree trunk. However, the richness and diversity indices exhibited a strong dependence on tissue type (P<0.05). The germplasm and host tree trunk impact the distribution patterns of endophytic fungi less than tissue type. Nevertheless, the relative frequencies of the dominant fungal groups were different among germplasms or host tree trunk types. Furthermore, there were some fungal species specific to certain germplasm or host tree trunk. This might be due to the distinctions in growth traits and chemical compositions of D. catenatum owning to the differences in D. catenatumgenetic background and microenvironment of host tree. Most of fungal taxa exhibit tissue specificity or preference. These results provide the basis for the study on the relationship between endophytic fungi and D. catenatum in stereo cultivation mode.

Insectos acuáticos asociados a Eichhornia azurea (Schwartz) Kunth en ciénagas del río Atrato, Chocó - Colombia

El objetivo de este estudio fue caracterizar la comunidad de insectos acuáticos asociados a Eichhornia azurea (Schwartz) Kunth en cuatro ciénagas de la cuenca media y baja del río Atrato (Chocó-Colombia) durante los periodos de aguas altas y bajas; igualmente se evaluó la influencia de las variables ambientales y fisicoquímicas sobre esta comunidad. Durante dos meses se hicieron colectas de insectos acuáticos asociados a las raíces de E. azurea, utilizando un cuadrante de un m2, dotado de una malla de 0,5 mm, con tres replicas por ciénaga y simultáneamente se midieron algunas variables físicas y químicas del agua. La comunidad estuvo compuesta por 6 órdenes, 21 familias y 28 géneros. El mayor número de organismos (55,39%) y de taxones (23) se registró en el periodo de aguas bajas. Los órdenes más abundantes fueron Ephemeroptera (37,55%) y Coleoptera (26,77%), sobresaliendo las familias Baetidae y Noteridae respectivamente; mientras que la mayor riqueza taxonómica fue para coleópteros, dípteros y hemípteros. No se presentaron diferencias significativas en la diversidad y dominancia entre periodos hidrológicos (p&gt;0,05), pero si en la riqueza específica (p&lt;0,05). Los grupos funcionales de mayor abundancia fueron predadores (54,81%) y colectores (43,70%). Las variables fisicoquímicas hídricas no mostraron diferencias significativas entre periodos hidrológicos y se presentaron asociaciones entre la entomofauna acuática y las variables abióticas analizadas, principalmente con el oxígeno disuelto, la conductividad y los sólidos totales disueltos.

Diversity analysis of subgingival microbial bacteria in peri-implantitis in Uygur population.

This study is to investigate the subgingival bacterial diversity and community structure in the Uygur subjects with peri-implantitis.Totally 40 cases of gingival crevicular fluid were collected from Uygur subjects and divided into the Control group (healthy implants) and Case group (peri-implantitis), respectively. DNA was extracted, and the sequencing in the 16SrRNA V4-V5 region was conducted on the Illumina Miseq sequencing platform. The 16SrRNA gene clone library was constructed and analyzed.Totally 733,759 valid tags were obtained from these 40 samples. After comparing with the Silva-16S database by the Uparse software, 263 operational taxonomic unit were finally harvested (135 for the Control group and 128 for the Case group). The differential bacteria between these 2 groups at the phylum, class, order, family, and genus levels were Actinobacteria, Actinomycetes, Pasteurellales, Moraxellaceae, and Acinetobacter, respectively. The dominant genera with significantly different distribution between the Control and Case groups included Vibrio, Campylobacter, Granulicatella, Acinetobacter, Micrococcus, and Moraxella. The α diverstiy analysis based on the chao diversity index showed that there was significant difference in the microbiological diversity between these 2 groups. Principal coordinates analysis analysis indicated significant differences in the bacterial community structure between these 2 groups. Cluster analysis showed higher abundance of Micrococcus in the Case group, while higher abundance of Prevotella in the Control group.There are significant differences in the diversity of subgingival bacteria between the Uygur subjects with healthy implants and peri-implantitis. Moraxella, Micrococcus, and Acinetobacter might represent dominant bacteria genera causing peri-implantitis in the Uygur population.

&lt;b&gt;Stream macro-invertebrate diversity of the Phobjikha Valley, Bhutan&lt;/b&gt;

Macro-invertebrates form an integral part of aquatic systems, and assessment of macro-invertebrate communities is one of the best ways to monitor the health of a stream. Despite this, stream monitoring of macro-invertebrates has been extremely limited in Bhutan. A study was conducted to generate baseline information on macro-invertebrate diversity in the Phobjikha valley, covering community composition and seasonal variation in diversity during post and pre-monsoon seasons. From a total of 244 units sampled in streams, 50 families from 13 orders were recorded. The dominant order overall was Ephemeroptera (31%), which also dominated the pre-monsoon assessment (33%), while Trichoptera (39%) dominated the post-monsoon assessment. The pre-monsoon assessment recorded two additional orders, Caenogastropoda and Veneroida. There was no significant difference in diversity between the post-monsoon and pre-monsoon assessments (p˃0.3), but a significant difference in species diversity between seasons was observed in pools and riffles. Physicochemical parameters indicated that pH, electrical conductivity and salinity were within favorable ranges for macro-invertebrates. Further studies of other habitats in different seasons will produce a more comprehensive understanding of macro-invertebrate diversity.