The Odra estuary in the southern Baltic Sea comprises the Odra (Szczecin) Lagoon, the Pomeranian Bay and a number of other shallow water areas and channels. Known for its abundance of fish, eutrophication in the Odra Lagoon is a pressing issue for science and environmental management representing a global problem: What determines the seasonal variability of nitrogen and nitrogen turnover in shallow water areas, and how does seasonal variability change due to climatic changes such as warming and sea level rise? How do such changes affect nutrient exports to the regional ocean? This study employs a high-resolution unstructured model system to investigate physical-biogeochemical interactions, nitrogen turnover, and conditions leading to nitrogen export to the Baltic Sea within the Odra estuary. The research comprises hindcast and a climatic experiment with modified water level and temperature inputs. The model reproduces the thermohaline dynamics of brackish shallow water areas, phytoplankton blooms and the variability of inorganic nitrogen. The simulations identify the dynamic partitioning of the Odra Lagoon into the highly eutrophic, lake-like Small Lagoon and more frequently flushed, zooplankton-rich Great Lagoon. Although the two years of the hindcast simulation feature very different boundary conditions in terms of river forcing, comparable patterns of seasonal nitrogen export emerge. In a climate change experiment with increased sea levels and global temperatures, the system appears sensitive, but remains stable with regard to nutrient transport and is therefore predictable. The climate change experiment reveals enhanced primary producer biomass concentrations, suggesting heightened eutrophication. While in the shallow waters of Odra Lagoon oxygen concentration remains relatively stable, oxygen depletion intensifies as the lagoon outflows enter the Pomeranian Bay. This phenomenon is linked to increased denitrification within the stratified Odra plume. Deeper, meandering channels, such as Swina, demonstrate resilience to oxygen reduction, influenced by sea level rise and enhanced currents. Based on the temporal-spatial high-resolution coupled, validated simulations, it is possible to develop tailor-made management solutions without having to run expensive and complicated observation campaigns in the shallow waters with complex topography.
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