Semiquinone Form Research Articles

The High-Spin Heme b L Mutant Exposes Dominant Reaction Leading to the Formation of the Semiquinone Spin-Coupled to the [2Fe-2S]+ Cluster at the Qo Site of Rhodobacter capsulatus Cytochrome bc 1.

Cytochrome bc 1 (mitochondrial complex III) catalyzes electron transfer from quinols to cytochrome c and couples this reaction with proton translocation across lipid membrane; thus, it contributes to the generation of protonmotive force used for the synthesis of ATP. The energetic efficiency of the enzyme relies on a bifurcation reaction taking place at the Qo site which upon oxidation of ubiquinol directs one electron to the Rieske 2Fe2S cluster and the other to heme b L. The molecular mechanism of this reaction remains unclear. A semiquinone spin-coupled to the reduced 2Fe2S cluster (SQo-2Fe2S) was identified as a state associated with the operation of the Qo site. To get insights into the mechanism of the formation of this state, we first constructed a mutant in which one of the histidine ligands of the iron ion of heme b L Rhodobacter capsulatus cytochrome bc 1 was replaced by asparagine (H198N). This converted the low-spin, low-potential heme into the high-spin, high-potential species which is unable to support enzymatic turnover. We performed a comparative analysis of redox titrations of antimycin-supplemented bacterial photosynthetic membranes containing native enzyme and the mutant. The titrations revealed that H198N failed to generate detectable amounts of SQo-2Fe2S under neither equilibrium (in dark) nor nonequilibrium (in light), whereas the native enzyme generated clearly detectable SQo-2Fe2S in light. This provided further support for the mechanism in which the back electron transfer from heme b L to a ubiquinone bound at the Qo site is mainly responsible for the formation of semiquinone trapped in the SQo-2Fe2S state in R. capusulatus cytochrome bc 1.

Photogeneration and reactivity of flavin anionic semiquinone in a bifurcating electron transfer flavoprotein

Electron transfer bifurcation allows production of a strongly reducing carrier at the expense of a weaker one, by redistributing energy among a pair of electrons. Thus, two weakly-reducing electrons from NADH are consumed to produce a strongly reducing ferredoxin or flavodoxin, paid for by reduction of an oxidizing acceptor. The prevailing mechanism calls for participation of a strongly reducing flavin semiquinone which has been difficult to observe with site-certainly in multi-flavin systems. Using blue light (450 nm) to photoexcite the flavins of bifurcating electron transfer flavoprotein (ETF), we demonstrate accumulation of anionic flavin semiquinone in excess of what is observed in equilibrium titrations, and establish its ability to reduce the low-potential electron acceptor benzyl viologen. This must occur at the bifurcating flavin because the midpoint potentials of the electron transfer (ET) flavin are not sufficiently negative. We show that bis-tris propane buffer is an effective electron donor to the flavin photoreduction, but that if the system is prepared with the ET flavin chemically reduced, so that only the bifurcating flavin is oxidized and photochemically active, flavin anionic semiquinone is formed more rapidly. Thus, excited bifurcating flavin is able to draw on an electron stored at the ET flavin. Flavin semiquinone photogenerated at the bifurcation site must therefore be accompanied by additional semiquinone formation by oxidation of the ET flavin. Consistent with the expected instability of bifurcating flavin semiquinone, it subsides immediately upon cessation of illumination. However comparison with yields of semiquinone in equilibrium titrations suggest that during continuous illumination at pH 9 a steady state population of 0.3 equivalents of bifurcating flavin semiquinone accumulates, and then undergoes further photoreduction to the hydroquinone. Although transient, the population of bifurcating flavin semiquinone explains the system's ability to conduct light-driven electron transfer from bis-tris propane to benzyl viologen, in effect trapping energy from light.

Electrical and Structural Characterization of Poly(3-hexylthiophene)–Polydiphenylamine Blends Synthesized on Various Conductive Substrates

With the aim of assessing whether polydiphenylamine (PDPA) can be used as an inductor layer for stabilizing the radical cation in the polymer matrix of poly(3-hexylthiophene) (P3HT), as used in photovoltaic devices, interphases between P3HT and PDPA films were prepared electrochemically on platinum (Pt), tin-doped indium oxide (ITO), and gold (Au) electrodes in lithium perchlorate-acetonitrile (LiClO4-ACN) solution, being denoted as Pt/PDPA:P3HT, ITO/PDPA:P3HT, and Au/PDPA:P3HT, respectively. To characterize the interphases deposited on the different electrodes, Raman spectroscopy was used to monitor the behavior of the segments in the blend matrix compared with homopolymer films deposited on the different conducting electrodes, to study the stability of the quinone and semiquinone segments of PDPA and P3HT. Bode phase diagrams obtained by electrochemical impedance spectroscopy (EIS) were used to verify the prepared systems as a function of time since preparation. It was found that the polaron structure (oxidized thiophene ring radical cation segments) was stable for 97 h when the blend was synthesized under controlled temperature (22°C) conditions at constant potential of 1.70 V applied for 60 s to the surface of the Pt electrode. For the blends synthesized on ITO and Au, these conditions resulted in greater stabilization of the bipolaron structure (dication segments). These findings reveal the effect of PDPA induction over the P3HT layer in stabilizing the semiquinone and quinone forms, compared with interfaces formed solely by homopolymers in contact with the different electrodes.

Monitoring the changes of 5-caffeoylquinic acid during its reaction with ABTS cation radicals by LC-MS

Reactive oxygen species including free radicals are responsible for noxious changes in living organisms which can be associated with many diseases for e.g. cardiovascular, neurodegenerative, and inflammatory diseases or cancer. In the struggle against free radicals the organism is supported by antioxidants. As they are often provided by nature, they can be considered safe. 5-Caffeoylquinic acid is one of main chlorogenic acids found in vegetables and fruits. The main objective of the presented article was monitoring the changes of 5-caffeoylquinic acid during the reaction with colorful radicals. The experiments were conducted at different molar ratios of radicals to antioxidant using liquid chromatography–mass spectrometry. Irrespective of the applied molar ratios, the obtained results proved that the antioxidant takes part in the reaction for three days. Additionally, during the radical neutralization the formation of semiquinones and/or quinones, methoxy adduct of caffeoylquinic acid, and quinones adduct with methanol was observed.

Characterization of redox properties of FAD cofactor of Thermotoga maritima thioredoxin reductase

The fluorescence properties of FAD of Thermotoga maritima thioredoxin reductase (TmTR), taken together with the amino acid sequences and structures of similar TRs, are consistent with the interdomain rotation in the catalysis of TmTR. The standard redox potential of FAD of TmTR, –0.230 V, determined by the reactions with 3-acetylpyridine adenine dinucleotide (APAD+/APADH) redox couple, is close to that of E. coli TR. During the reduction of duroquinone with TmTR, the transient formation of neutral FAD semiquinone, and, possibly, FADH2–NAD+ complex was observed. This shows that in spite of obligatory twoelectron (hydride)-transfer between NADH and physiological disulfide oxidants, the FAD cofactor of TmTR may exist under a stable semiquinone form.

Deazaflavin reductive photocatalysis involves excited semiquinone radicals

Flavin-mediated photocatalytic oxidations are established in synthetic chemistry. In contrast, their use in reductive chemistry is rare. Deazaflavins with a much lower reduction potential are even better suited for reductive chemistry rendering also deazaflavin semiquinones as strong reductants. However, no direct evidence exists for the involvement of these radical species in reductive processes. Here, we synthesise deazaflavins with different substituents at C5 and demonstrate their photocatalytic activity in the dehalogenation of p-halogenanisoles with best performance under basic conditions. Mechanistic investigations reveal a consecutive photo-induced electron transfer via the semiquinone form of the deazaflavin as part of a triplet-correlated radical pair after electron transfer from a sacrificial electron donor to the triplet state. A second electron transfer from the excited semiquinone to p-halogenanisoles triggers the final product formation. This study provides first evidence that the reductive power of excited deazaflavin semiquinones can be used in photocatalytic reductive chemistry.

Dimerized p-Semiquinone Radical Anions Stabilized by a Pair of Rare-Earth Metal Ions.

Here we report stable p-quinone-radical-bridged rare-earth complexes involving the ligand tetramethylquinone (QMe4•-). The complexes, {Y[(QMe4)•-Cl2(THF)3]}2 (1) and {Gd[(QMe4)•-Cl2(THF)3]}2 (2), where THF = tetrahydrofuran, are sufficiently stable that we can measure the single-crystal structures and perform magnetic and electron paramagnetic resonance measurements. These studies show the presence of a semiquinone form and that the magnetic interaction between the radicals in the dimer is strong and antiferromagnetic.

Crystallographic and kinetic analyses of the FdsBG subcomplex of the cytosolic formate dehydrogenase FdsABG from Cupriavidus necator

Formate oxidation to carbon dioxide is a key reaction in one-carbon compound metabolism, and its reverse reaction represents the first step in carbon assimilation in the acetogenic and methanogenic branches of many anaerobic organisms. The molybdenum-containing dehydrogenase FdsABG is a soluble NAD+-dependent formate dehydrogenase and a member of the NADH dehydrogenase superfamily. Here, we present the first structure of the FdsBG subcomplex of the cytosolic FdsABG formate dehydrogenase from the hydrogen-oxidizing bacterium Cupriavidus necator H16 both with and without bound NADH. The structures revealed that the two iron-sulfur clusters, Fe4S4 in FdsB and Fe2S2 in FdsG, are closer to the FMN than they are in other NADH dehydrogenases. Rapid kinetic studies and EPR measurements of rapid freeze-quenched samples of the NADH reduction of FdsBG identified a neutral flavin semiquinone, FMNH•, not previously observed to participate in NADH-mediated reduction of the FdsABG holoenzyme. We found that this semiquinone forms through the transfer of one electron from the fully reduced FMNH-, initially formed via NADH-mediated reduction, to the Fe2S2 cluster. This Fe2S2 cluster is not part of the on-path chain of iron-sulfur clusters connecting the FMN of FdsB with the active-site molybdenum center of FdsA. According to the NADH-bound structure, the nicotinamide ring stacks onto the re-face of the FMN. However, NADH binding significantly reduced the electron density for the isoalloxazine ring of FMN and induced a conformational change in residues of the FMN-binding pocket that display peptide-bond flipping upon NAD+ binding in proper NADH dehydrogenases.

Antineoplastic Activity of Alkylaminolapachol Analogues and their Copper Complexes against MDA-MB-231 Human Breast Cancer Cell Lines

In present study, three alkylamino substituted hydroxynaphthoquinone analogues of naturally occurring bioactive lapachol are synthesized. Further, copper(II) complexes of these ligands have been synthesized using hassle free modified grindstone method. Both ligands and copper(II) complexes were characterized using UV-visible spectroscopy, FTIR, elemental analysis and NMR spectra. Cell viability assay of the compound was carried out against growth of MDA-MB-231 human breast cancer cell lines. A better tumorocidal activity was observed for ligands and their copper(II) complexes in concentration of 2.95 to 0.11 mmol/L. Antineoplastic activity of copper(II) complexes was found to be more than parent ligands. Antimicrobial assay results showed that compound exhibit better activity against organisms under study. Antimicrobial susceptibility of compounds was carried out against culture of E. coli K12 (RP4), B. subtilis (pUB110), K. pneumoniae and S. paratyphi. The lowest MIC of < 0.20 mg/mL was obtained for L-3 against S. paratyphi. Cyclic voltammetry of ligand and complexes performed in non-aqueous system shows that ligand exhibits classical two step redox couple corresponds to the formation of semiquinone and catechole moieties in solution state at characteristic potential values. Whereas cyclic voltammogram of copper(II) complexes exhibit additional peak at characteristic potential corresponds to reversible redox reaction of central Cu(II) ion in complexes.

Cryo-EM structure of the spinach cytochrome b6 f complex at 3.6Å resolution.

The cytochrome b6 f (cytb6 f ) complex has a central role in oxygenic photosynthesis, linking electron transfer between photosystems I and II and converting solar energy into a transmembrane proton gradient for ATP synthesis1-3. Electron transfer within cytb6 f occurs via the quinol (Q) cycle, which catalyses the oxidation of plastoquinol (PQH2) and the reduction of both plastocyanin (PC) and plastoquinone (PQ) at two separate sites via electron bifurcation2. In higher plants, cytb6 f also acts as a redox-sensing hub, pivotal to the regulation of light harvesting and cyclic electron transfer that protect against metabolic and environmental stresses3. Here we present a 3.6Å resolution cryo-electron microscopy (cryo-EM) structure of the dimeric cytb6 f complex from spinach, which reveals the structural basis for operation of the Q cycle and its redox-sensing function. The complex contains up to three natively bound PQ molecules. The first, PQ1, is located in one cytb6 f monomer near the PQ oxidation site (Qp) adjacent to haem bp and chlorophyll a. Two conformations of the chlorophyll a phytyl tail were resolved, one that prevents access to the Qp site and another that permits it, supporting a gating function for the chlorophyll a involved in redox sensing. PQ2 straddles the intermonomer cavity, partially obstructing the PQ reduction site (Qn) on the PQ1 side and committing the electron transfer network to turnover at the occupied Qn site in the neighbouring monomer. A conformational switch involving the haem cn propionate promotes two-electron, two-proton reduction at the Qn site and avoids formation of the reactive intermediate semiquinone. The location of a tentatively assigned third PQ molecule is consistent with a transition between the Qp and Qn sites in opposite monomers during the Q cycle. The spinach cytb6 f structure therefore provides new insights into how the complex fulfils its catalytic and regulatory roles in photosynthesis.

Impact of the redox state of flavin chromophores on the UV–vis spectra, redox and acidity constants and electron affinities

Isoalloxazine is the core chromophore present in the cofactor of flavoproteins. Naturally, flavin usually exists in five different redox forms in protein milieu by accepting up to 2-electrons and 2-protons. The redox state has a strong impact on its photophysical properties. Fully oxidized and anionic radical isoalloxazine absorb blue light, neutral semi-quinone form absorbs green/red light and fully reduced forms absorb UV light. In the excited state, isoalloxazine becomes a strong oxidizer and acidic upon reduction. Understanding the relation between the redox form and its photophysical properties is fundamental to understand the biochemistry of flavoproteins. Here, we compare the effect of the redox state of isoalloxazine and some derivates on the UV-visible spectra, the redox potentials, acidity constants and electron affinities by means of electronic structure simulations. We show that the physical properties are directly related to a transformation of a α-diimine bond to a ethene-1,2-diamine bond upon reduction.

Characterization of a MnII complex of Alizarin suggests attributes explaining a superior anticancer activity: A comparison with anthracycline drugs

Alizarin (DHA), a simple analogue of the anthracycline core was used to form a complex with MnII to see if the complex matches the efficacy of anthracyclines. It was characterized by spectroscopic techniques, mass spectrometry and TGA. In the absence of a single crystal, the structure was obtained by computational techniques. Interaction of the complex with DNA at different ionic strength and pH was compared with anthracyclines to see if it addresses some of the shortcomings of hydroxy-9,10-anthraqunones in general and DHA in particular when compared to anthracyclines. Increased affinity of the complex towards DNA and that its binding constant values do not decrease with increase in pH or decrease in ionic strength of the medium are positive attributes of complex formation. This is significant since cancer patients often experience fluctuation of pH and ionic strength in body fluids during treatment that affect efficacy of drugs. The complex decreases the flow of electrons from NADH to molecular oxygen owing to decreased semiquinone formation; a fact important for controlling cardiotoxicity. Experiments on ROS depletion in HeLa, Hep G2 and WI 38 lung fibroblast cells by the H2DCFDA assay suggests a shift in mechanism for the complex from that of DHA. Loss in efficacy due to decrease in semiquinone formation by the complex is made up by other attributes of complex formation that eventually promote cytotoxicity. Compounds were tried on HeLa, Hep G2 and WI 38 lung fibroblast cells. An effort was made to correlate aspects of semiquinone formation, ROS generation and interaction with DNA with results obtained on two cancer cell lines and a normal cell line.

Electronic Structure and Magnetic Properties of o-Benzoquinone Iron Complexes with Tetraazamacrocyclic Ligands

Structure, energy characteristics, and magnetic properties of o-benzoquinone iron complexes with tetradentate macrocyclic nitrogen containing bases (pyridinophane and tris(2-pyridylmethyl)amine) are studied with a DFT (UTPSSh/6-311++G(d,p)) quantum chemical method. Electron withdrawing substituents in the redox-active ligand stabilize its dianionic form but do not significantly affect the energy difference between the electromers. Strong ferromagnetic exchange interactions are predicted in the isomers of complexes containing a high-spin divalent iron ion and the semiquinone form of o-benzoquinone. According to the calculations, all studied compounds can undergo thermally induced spin crossover transitions.

Fluorescence Properties of Flavin Semiquinone Radicals in Nitronate Monooxygenase.

Fluorescent cofactors like flavins can be exploited to probe their local environment with spatial and temporal resolution. Although the fluorescence properties of the oxidized and two-electron-reduced states of flavins have been studied extensively, this is not the case for the one-electron-reduced state. Both the neutral and anionic semiquinones have proven particularly challenging to examine, as they are unstable in solution and are transient, short-lived species in many catalytic cycles. Here, we report that the nitronate monooxygenase (NMO) from Pseudomonas aeruginosa PAO1 is capable of stabilizing both semiquinone forms anaerobically for hours, thus enabling us to study their spectroscopy in a constant protein environment. We found that in the active site of NMO, the anionic semiquinone exhibits no fluorescence, whereas the neutral semiquinone radical shows a relatively strong fluorescence, with a behavior that violates the Kasha-Vavilov rule. These fluorescence properties are discussed in the context of time-dependent density functional theory calculations, which reveal low-lying dark states in both systems.

DFT Prediction and Experimental Investigation of Valence Tautomerism in Cobalt-Dioxolene Complexes.

The family of complexes of general formula [Co(Me ntpa)(Xdiox)]+ (tpa = tris(2-pyridylmethyl)amine, n = 0-3 corresponds to successive methylation of the 6-position of the pyridine rings; X = Br4, Cl4, H4, 3,5-Me2, 3,5- tBu2; diox = dioxolene) was investigated by density functional theory (DFT) calculations to predict the likelihood of valence tautomerism (VT). The OPBE functional with relativistic and solvent corrections allowed accurate reproduction of trends in spin-state energetics, affording the prediction of VT in complex [Co(Me3tpa)(Br4diox)]+ (1+). One-electron oxidation of neutral precursor [CoII(Me3tpa)(Br4cat)] (1) enabled isolation of target compounds 1(PF6) and 1(BPh4). Solution variable-temperature UV-vis absorption and Evans method magnetic susceptibility data confirm DFT predictions that 1+ exists in a temperature-dependent valence tautomeric equilibrium between low-spin Co(III)-catecholate and high-spin Co(II)-semiquinonate forms. The solution VT transition temperature of 1+ is solvent-tunable with critical temperatures in the range of 291-359 K for the solvents measured. Solid-state magnetic susceptibility measurements of 1(PF6) and 1(BPh4) reveal the onset of VT transitions above room temperature.

Redox control of iodotyrosine deiodinase.

The redox chemistry of flavoproteins is often gated by substrate and iodotyrosine deiodinase (IYD) has the additional ability to switch between reaction modes based on the substrate. Association of fluorotyrosine (F-Tyr), an inert substrate analog, stabilizes single electron transfer reactions of IYD that are not observed in the absence of this ligand. The co-crystal of F-Tyr and a T239A variant of human IYD have now been characterized to provide a structural basis for control of its flavin reactivity. Coordination of F-Tyr in the active site of this IYD closely mimics that of iodotyrosine and only minor perturbations are observed after replacement of an active site Thr with Ala. However, loss of the side chain hydroxyl group removes a key hydrogen bond from flavin and suppresses the formation of its semiquinone intermediate. Even substitution of Thr with Ser decreases the midpoint potential of human IYD between its oxidized and semiquinone forms of flavin by almost 80 mV. This decrease does not adversely affect the kinetics of reductive dehalogenation although an analogous Ala variant exhibits a 6.7-fold decrease in its kcat /Km . Active site ligands lacking the zwitterion of halotyrosine are not able to induce closure of the active site lid that is necessary for promoting single electron transfer and dehalogenation. Under these conditions, a basal two-electron process dominates catalysis as indicated by preferential reduction of nitrophenol rather than deiodination of iodophenol.

Thermodynamic properties of two magnetically distinct forms of semiquinone in the catalytic Qi site of cytochrome bc1

Thermodynamic properties of two magnetically distinct forms of semiquinone in the catalytic Qi site of cytochrome bc1

Activity of CoII-Quinalizarin: A Novel Analogue of Anthracycline-Based Anticancer Agents Targets Human DNA Topoisomerase, Whereas Quinalizarin Itself Acts via Formation of Semiquinone on Acute Lymphoblastic Leukemia MOLT-4 and HCT 116 Cells.

Quinalizarin (THAQ), a hydroxy-9,10-anthraquinone analogue of the family of anthracycline anticancer drugs and an inhibitor of protein kinase, was observed for its anticancer activity. Because apart from showing anticancer activity, anthracyclines and their analogues also show cardiotoxic side effects, believed to be addressed through metal complex formation; an effort was made to realize this by preparing a CoII complex of THAQ. The aim of this study was to find out if complex formation leads to a decrease in the generation of intermediates that are responsible for toxic side effects. However, because this also meant that efficacy on cancer cells would be compromised, studies were undertaken on two cancer cell lines, namely, acute lymphoblastic leukemia (ALL) MOLT-4 and HCT116 cells. The complex decreases the flow of electrons from NADH to molecular oxygen (O2) in the presence of NADH dehydrogenase forming less semiquinone than THAQ. It showed increased affinity toward DNA with binding constant values remaining constant over the physiological pH range unlike THAQ (for which decrease in binding constant values with increase in pH was observed). The complex is probably a human DNA topoisomerase I and human DNA topoisomerase II poison acting by stabilizing the covalent topoisomerase-cleaved DNA adduct, a phenomenon not observed for THAQ. Activity of the compounds on cancer cells suggests that THAQ was more effective on ALL MOLT-4 cells, whereas the complex performed better on HCT116 cells. Results suggest that the formation of semiquinone probably dominates the action because of THAQ, whereas the performance of the complex is attributed to increased DNA binding, inhibition of topoisomerase, and so forth. Inspite of a decrease in the generation of superoxide by the complex, it did not hamper efficacy on either cell line, probably compensated by improved DNA binding and inhibition of topoisomerase enzymes which are positive attributes of complex formation. A decrease in superoxide formation suggests that the complex could be less cardiotoxic, thus increasing its therapeutic index.

DOPA and Adrenaline Oxidation Kinetics and Intermediates Identified by Electrospray Ionization Mass Spectrometry in Real Time

AbstractDOPA and adrenaline (Adr) oxidation intermediates were identified using electrospray ionization mass spectrometry (ESI MS) by exploiting electrochemical oxidation reactions that occur during ESI. In addition, on‐line MS monitoring of the oxidations allowed evaluation of DOPA and Adr oxidation kinetics with approximately 3 ms time resolution. Kinetic information was confirmed by on‐line electrochemistry/ESI MS (EC/ESI MS). Application of an EC cell voltage in EC/ESI MS increased the oxidation rates and MS detection sensitivity of intermediates. During ESI and EC/ESI MS, oxidation rates were , cyclization rates of quinone oxidation products were , and cyclic leucochrome oxidation rates were DA>Adr>DOPA. Formation of radical semiquinones of Adr and DOPA through OH. radical‐initiated oxidation pathways was indicated, as reported for DA. Images of catecholamine oxidation pathways obtained with high time resolution, using MS, underscore the differences between the reactivity of DOPA, Adr, and DA.

New insights into the formation mechanism of gold nanoparticles using dopamine as a reducing agent

Dopamine (DA), a simplified mimic of mussel proteins, can be employed as a reductant in the preparation of Au nanoparticles (AuNPs) due to its inherent catechol building block. The widely accepted mechanism of AuNP formation using DA as the reductant assumes that the reduction of Au(III) ions involves the two-electron oxidation of DA, where the corresponding phenol and phenolates serve as the reductive species to yield quinone. We herein report a novel insight into the mechanism of formation of AuNPs using DA as the reductant. We demonstrate that the synthesis of AuNPs requires the prior oxidation of the DA to form quinone units, which then catalyze the formation of semiquinones. These semiquinone radicals (SMQs) reduce the Au(III) ions to form the initial AuNPs, and further growth is then catalyzed by the first AuNPs, with nucleation occurring where the SMQs, phenols, and phenolates can serve as reductive species. In addition, DA oxidizes and polymerizes to form a polydopamine capping layer on the AuNPs. We therefore expect that the novel mechanism proposed herein may promote us to furthermore explore the production of noble metal NPs using other polyphenols.