Alkylthiol Self-assembled Monolayers Research Articles

Structure of the Pentylthiolate Self-Assembled Monolayer on Ag(111)

A combination of scanning tunneling microscopy (STM), low-energy electron diffraction (LEED), and normal incidence X-ray standing waves (NIXSW) has been used to investigate the structure of the self-assembled monolayer (SAM) formed by pentylthiolate on Ag(111) in ultrahigh vacuum through interaction with pentanethiol. NIXSW data are closely similar to those for methythiolate on Ag(111) in the commensurate (root 7x root 7)R19 degrees phase and consistent with a similar adsorbate-induced reconstruction of the outermost Ag layer comprising only 3/7 ML of Ag atoms. However, both STM and LEED show that the local lateral periodicity is similar to 5% larger in the pentylthiolate phase and that the resulting SAM is not commensurate with the substrate. The results are discussed in the context of previously published results for other alkylthiolate SAMs on Ag(111).

STM observation of a single diarylethene flickering

We report the STM observation of single diarylethene derivatives (DD) embedded into alkylthiol self-assembled monolayers (SAM) on Au(1 1 1). Telegraph noise in the data shows that the molecular conductance oscillates between two states. Comparing our results to the ones obtained by other teams observing conductance flickering with systems in the same geometry, we relate the two observed states to the two isomeric configurations of the molecule under study.

Adsorption Behavior of DNA-Wrapped Carbon Nanotubes on Self-Assembled Monolayer Surfaces

We have examined the adsorption of DNA-wrapped single-walled carbon nanotubes (DNA-SWNTs) on hydrophobic, hydrophilic, and charged surfaces of alkylthiol self-assembled monolayers (SAMs) on gold. Our goal is to understand how DNA-SWNTs interact with surfaces of varying chemical functionality. These samples were characterized using reflection absorption FTIR (RAIRS), X-ray photoelectron spectroscopy (XPS), and Raman spectroscopy. We have found that DNA-SWNTs preferentially adsorb to positively charged amine-terminated SAMs and to bare gold surfaces versus hydrophobic methyl-terminated or negatively charged carboxylic acid-terminated SAMs. Examination of the adsorption on gold of single-strand DNA (ssDNA) of the same sequence used to wrap the SWNTs suggests that the DNA wrapping plays a role in the adsorption behavior of DNA-SWNTs.

Ferrocenylalkylthiolate labeling of defects in alkylthiol self-assembled monolayers on gold

Coverage defects in alkylthiol self-assembled monolayers (SAMs) are critically important to function related to electron transfer from soluble redox probes. There is therefore a need for an accurate and direct measurement of the number and type of coverage defect in a range of SAMs. Ferrocenyldodecanethiol (FcC(12)SH) has been assessed as an electrochemically-addressable label of coverage defects. It is shown that short time exposure of a SAM to FcC(12)SH leads to a quantifiable Fc coverage (Gamma(Fc)), with Gamma(Fc) < 1% readily measurable. The voltammetric signature of FcC(12)SH label is also able to differentiate types of defect in a given SAM. A number of SAM preparation conditions are assessed for the density and type of coverage defect. This labeling method therefore will be a useful tool for research into SAM property-function relationships.

The use of alkanethiol self-assembled monolayers on 316L stainless steel for coronary artery stent nanomedicine applications: an oxidative and in vitro stability study

The use of self-assembled monolayers (SAMs) on medical devices offers a methodology for the incorporation of nanotechnology into medicine. SAMs are highly ordered nanosized molecular coatings, adding 1 to 10 nm thickness to a surface. This work is part of an overall goal to deliver therapeutic drugs from the surface of metal coronary stents using SAMs. In this study the oxidative and in vitro stability of functional alkylthiol SAMs on 316L stainless steel (SS) has been demonstrated. SAMs of 11-mercaptoundecanoic acid (-COOH SAM) and 11-mercapto-1-undecanol (-OH SAM) were formed on 316L SS. X-ray photoelectron spectroscopy (XPS), Fourier transform infrared spectroscopy (FTIR), and contact angle (CA) measurements collectively confirmed the formation of functional alkylthiol SAMs on 316L SS. Well-formed SAMs (CA: 82 deg ± 9 deg) were achieved within 48 hours of immersion in ethanolic solutions, after which no significant improvement in CA was observed. The ratio of the thiolate peak (163.5 eV) to the oxidized sulfur (sulfonates) peak (166.5 eV) gives us an indication of the percentage SAMs that would bind to the metal and serve as a drug reservoir in vivo; which in turn represents the stability and viability of these SAMs, keeping in mind the cardiovascular application under consideration. Oxidative and in vitro stability studies showed that alkanethiol SAMs oxidized completely within 14 days. The SAMs tend to desorb and leave the metal surface after longer time periods (21 days) in phosphate-buffered saline (PBS) immersion, whereas for oxidative exposure the SAMs continue to remain on the metal surface in the form of sulfonates. Although the chemistry of bonding of alkylthiol with the 316L SS is not well understood, the nanosized alkylthiol SAMs demonstrate sufficient stability to justify further study on these systems for potential in vivo drug delivery in the chosen coronary artery stent applications.

Rearrangements in an Alkylthiolate Self-Assembled Monolayer Using Electrostatic Interactions between Nanoscale Asperity and Organomercaptan Molecules

Chemically induced rearrangements of amphifunctional molecules have been demonstrated using strong nonuniform electric fields (10(8)-10(10) V m(-1)) induced in the vicinity of nanoscale asperities. Electrostatic interactions utilizing these rearrangements of alkylthiolates assembled on Au(111) result in the nanopatterning of raised nanostructure (1.5-9 nm high, 15-100 nm wide) arrays on a second time scale by manipulating an atomic force microscope (AFM) tip above the monolayer. It is suspected that, as a result of the oxidative cleavage initiated by a weak bias of the tip, the S end of the alkylthiolate chain carrying a sulfenium cation is attracted to the (lifting) tip, forming bi- and higher-layer structures in the vicinity of the tip apex. Stabilization of the multiple-layered structures is accomplished via mutual attraction and entanglement of hydrocarbon chains. The rearrangements suggest a novel and general approach for nanoscale architecture in self-assembled systems.

Structural and kinetic properties of laterally stabilized, oligo(ethylene glycol)-containing alkylthiolates on gold: A modular approach

The formation of highly ordered self-assembled monolayers (SAMs) on gold from an unusually long and linear compound HS(CH(2))(15)CONH(CH(2)CH(2)O)(6)CH(2)CONH(CH(2))(15)CH(3) is investigated by contact angle goniometry, ex situ null ellipsometry, cyclic voltammetry and infrared reflection-absorption spectroscopy. The molecules are found to assemble in an upright position as a complete monolayer within 60 min. The overall structure of the SAM reaches equilibrium within 24 h as evidenced by infrared spectroscopy, although a slight improvement in water contact angles is observed over a period of a few weeks. The resulting SAM is 60 A thick and it displays an advancing water contact angle of 112 degrees and excellent electrochemical blocking characteristics with typical current densities about 20 times lower as compared to those observed for HS(CH(2))(15)CH(3) SAMs. The dominating crystalline phases of the supporting HS(CH(2))(15) and terminal (CH(2))(15)CH(3) alkyl portions, as well as the sealed oligo(ethylene glycol) (OEG) "core," appear as unusually sharp features in the infrared spectra at room temperature. For example, the splitting seen for the CH(3) stretching and CH(2) scissoring peaks is normally only observed for conformationally trapped alkylthiolate SAMs at low temperatures and for highly crystalline polymethylenes. Temperature-programmed infrared spectroscopy in ultrahigh vacuum reveals a significantly improved thermal stability of the SAM under investigation, as compared to two analogous OEG derivatives without the extended alkyl chain. Our study points out the advantages of adopting a "modular approach" in designing novel SAM-forming compounds with precisely positioned in plane stabilizing groups. We demonstrate also the potential of using the above set of compounds in the fabrication of "hydrogel-like" arrays with controlled wetting properties for application in the ever-growing fields of protein and cell analysis, as well as for bioanalytical applications.

Ab initio and analytic intermolecular potentials for Ar–CH3OH

Ab initio calculations at the CCSD(T)/aug-cc-pVTZ level of theory were used to characterize the Ar-CH(3)OH intermolecular potential energy surface (PES). Potential energy curves were calculated for four different Ar + CH(3)OH orientations and used to derive an analytic function for the intermolecular PES. A sum of Ar-C, Ar-O, Ar-H(C), and Ar-H(O) two-body potentials gives an excellent fit to these potential energy curves up to 100 kcal mol(-1), and adding an additional r(-n) term to the Buckingham two-body potential results in only a minor improvement in the fit. Three Ar-CH(3)OH van der Waals minima were found from the CCSD(T)/aug-cc-pVTZ//MP2/aug-cc-pVTZ calculations. The structure of the global minimum is in overall good agreement with experiment (X.-C. Tan, L. Sun and R. L. Kuczkowski, J. Mol. Spectrosc., 1995, 171, 248). It is T-shaped with the hydroxyl H-atom syn with respect to Ar. Extrapolated to the complete basis set (CBS) limit, the global minimum has a well depth of 0.72 kcal mol(-1) with basis set superposition error (BSSE) correction. The aug-cc-pVTZ basis set gives a well depth only 0.10 kcal mol(-1) smaller than this value. The well depths of the other two minima are within 0.16 kcal mol(-1) of the global minimum. The analytic Ar-CH(3)OH intermolecular potential also identifies these three minima as the only van der Waals minima and the structures predicted by the analytic potential are similar to the ab initio structures. The analytic potential identifies the same global minimum and the predicted well depths for the minima are within 0.05 kcal mol(-1) of the ab initio values. Combining this Ar-CH(3)OH intermolecular potential with a potential for a OH-terminated alkylthiolate self-assembled monolayer surface (i.e., HO-SAM) provides a potential to model Ar + HO-SAM collisions.

Formation and removal of alkylthiolate self-assembled monolayers on gold in aqueous solutions

We report the development of novel reagents and approaches for generating recyclable biosensors. The use of aqueous media for the formation of protein binding alkylthiolate monolayers on Au surfaces results in accelerated alkylthiolate monolayer formation and improvement in monolayer integrity as visualized by fluorescence microscopy and CV techniques. We have also developed an electrocleaning protocol that is compatible with microfluidics devices, and this technique serves as an on-chip method for cleaning Au substrates both before and after monolayer formation. The techniques for the formation and dissociation of biotinylated SAMs from aqueous solvents reported here may be applied towards the development of Au-based sensor devices and microfluidics chips in the future. A potential use of these devices includes the specific capture and triggered release of target cells, proteins, or small molecules from liquid samples.

Adsorption of Alkylthiol-Capped Gold Nanoparticles onto Alkylthiol Self-Assembled Monolayers: An SPR Study

The kinetics of alkylthiol-capped gold nanoparticle (RS/Au-NP) adsorption to alkylthiol/Au self-assembled monolayers (RS/Au-SAMs) has been studied using SPR (surface plasmon resonance) spectroscopy. Variation of the alkylthiol chain terminus (CH3, COOH) and solvent (H2O, hexane) provides insight into the relative importance of solvation energies (in the context of surface energies) and RS/Au-NP structure on adsorption kinetics. The kinetics, fitted to the Langmuir kinetic model, yield adsorption and desorption rate constants. DeltaG(ads) derived from kinetic data are compared to calculated values of work of adhesion (W(adh)), derived from the corresponding surface energies. The absence of a deltaG(ads) - W(adh) correlation arises because the measured kinetics are not reporting the approach to equilibrium and/or because there are factors (i.e., local chain packing defects, surface hydration differences, or particle-particle interactions) not accounted for in calculated W(adh) values.

Molecular dynamics imaging in micropatterned living cells

Micropatterning approaches using self-assembled monolayers of alkyl thiols on gold are not optimal for important imaging modalities in cell biology because of absorption of light and scattering of electrons by the gold layer. We report here an anisotropic solid microetching (ASOMIC) procedure that overcomes these limitations. The method allows molecular dynamics imaging by wide-field and total internal reflection fluorescence (TIRF) microscopy of living mammalian cells and correlative platinum replica electron microscopy.

Bioelectrocatalysis in ionic liquids. Examining specific cation and anion effects on electrode-immobilized cytochrome c

Cytochrome c immobilized on alkylthiol self-assembled monolayers exhibits a characteristic Fe(II)/Fe(III) redox signal that is lost when exposed to ionic liquids composed of a butylimidazolium cation combined with either hexafluorophosphate or bis(trifluoromethylsulfonyl)imide anion. In this study it was shown that exposure to the aqueous solubilized ionic liquid components, butyl-, hexyl-, and octyl-imidazolium cations and hexafluorophosphate, tetrafluoroborate, and bis(trifluoromethylsulfonyl)imide anions, resulted in partial electrochemical signal loss. Absorbance and fluorescence measurements showed that signal loss due to the cationic ionic liquid component followed a different mechanism than that of the anionic component. Although a portion of the signal was recoverable, irreversible signal loss also occurred in both cases. The source of the irreversible component is suggested to be the loss of protein secondary structure through complexation between the ionic liquid components and the protein surface residues. The reversible electrochemical signal loss is likely due to interfacial interactions imposed between the electrode and the cytochrome heme group. The influence of the amount of exposed surface residues was explored with a simplified model protein, microperoxidase-11.

Noble Metal Nanoparticles Deposited on Self‐Assembled Monolayers by Pulsed Laser Deposition Show Coulomb Blockade at Room Temperature

Nanometer-sized noble-metal clusters are fabricated on top of alkylthiolate self-assembled monolayers (SAMs) on annealed gold by pulsed laser deposition at elevated pressures. The size distribution of the clusters depends on the metal and on the pressure during the deposition. Scanning tunneling microscopy (STM) and conductive probe atomic force microscopy (CP-AFM) showed that the metal clusters are insulated from the substrate on top of the SAM. Coulomb blockades could be measured at room temperature by STM for palladium clusters on decanethiol SAMs.

Characterization of trypsin immobilized on the functionable alkylthiolate self-assembled monolayers: A preliminary application for trypsin digestion chip on protein identification using matrix-assisted laser desorption/ionization time-of-flight mass spectrometry

Self-assembled monolayers (SAMs) on coinage metal provide versatile modeling systems for studies of interfacial electron transfer, biological interactions, molecular recognition and other interfacial phenomena. Recently the bonding of enzyme to SAMs of alkanethiols onto Au electrode surfaces was exploited to produce a bio-sensing system. In this work, the attachment of trypsin to a SAMs surface of 11-mercaptoundecanoic acid was achieved using water soluble N-ethyl-N '-(3-dimethylaminopropyl)carbodiimide hydrochloride and N-hydroxysuccinimide as coupling agent. The thickness of SAMs was determined by optical ellipsometer; contact angles of the modified Au surfaces were measured in air using a goniometer. The Second Harmony Generation data displays the last few percents of the alkylthiol molecules adsorbed and produced the complete monolayer by inducing the transition from a high number of gauche defects to an all-trans conformation. Using X-ray Photoelectron Spectroscopy (XPS) and Fourier-Transformed Infrared Reflection-Absorption and Attenuated Total Reflection Spectroscopes (FTIR-RAS and ATR), we examined the chemical structures of samples with different treatments. By matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF MS), we demonstrated the digestion of bovine serum albumin (BSA) on the trypsin-immobilized SAMs surface. Experimental results have revealed that the XPS C1s core levels at 286.3 and 286.5 eV (Amine bond), 288.1 eV (Amide bond) and 289.3 eV (Carboxylic acid) illustrate the immobilization of trypsin. These data were also in good agreement with FTIR-ATR spectra for the peaks valued at 1659.4 cm(-1) (Amide I) and 1546.6 cm(-1) (Amide II). Using MALDI-TOF MS observations, analytical results have demonstrated the BSA digestion of the immobilized trypsin on the functionalized SAMs surface. For such surfaces, BSA was digested on the trypsin-immobilized SAMs surface, which shows the enzyme digestion ability of the immobilized trypsin. The terminal groups of the SAMs structure can be further functionalized with biomolecules or antibodies to develop surface-base diagnostics, biosensors, or biomaterials.

Biological bottom-up assembly of antibody nanotubes on patterned antigen arrays.

Application of biotechnology in nanofabrication has an advantage to produce functional building-block materials that may not have synthetic counterparts. Here we introduced a new type of building block, antibody nanotubes, and demonstrated anchoring them on complementary antigen arrays via antibody-antigen recognition. Biological recognition between the antibody nanotubes and the antigen arrays permitted recognition-driven assembly of ordered nanotube arrays. The array of antigens was written by using the tip of an atomic force microscope (AFM) on alkylthiol self-assembled monolayer (SAM)-coated Au substrates via nanografting. After antigens were immobilized onto the shaved regions of the alkylthiol SAMs with the AFM tip, antibody nanotubes, produced by incubating antibodies in template nanotube solutions, were selectively attached onto the antigen regions. This technique is very useful when multiple building blocks are necessary to address specific locations on substrates because simultaneous immobilization of multiple antibody nanotubes at specific complementary binding positions can be achieved in a single process.

Fabrication of Arrays of Gold Islands on Self-Assembled Monolayers Using Pulsed Laser Deposition through Nanosieves

Sandwich structures of gold-self-assembled monolayer-gold were prepared by deposition of gold on alkylthiolate self-assembled monolayers on polycrystalline gold, using pulsed laser deposition (PLD) through a nanosieve. The arrays of sandwiches, around 600 nm in diameter, approximately 10 nm high, and spaced 1.6 im apart, were analyzed using tapping mode atomic force microscopy. Electrochemical copper deposition experiments showed that of the islands deposited on octadecanethiolate monolayers about 15% were electrically insulated from the bottom gold electrode. This means that PLD is a suitable technique for the fabrication of metal-SAM-metal sandwich structures.

Lipid vesicle adsorption on electroactive self-assembled monolayers

This paper presents the results of a study of the interaction of lipid vesicles with an electroactive, ferrocene alkylthiol self-assembled monolayer (SAM) in terms of the optical changes of the adsorbed lipid layer (measured by surface plasmon resonance (SPR)) and changes in the electrochemical properties of the SAM, as measured by cyclic voltammetry. An curious change in the cyclic voltammogram following adsorption of lipid is observed. We speculate on a possible explanation for this effect.

A washboard with moment of inertia model of gas-surface scattering.

A washboard with moment of inertia (WBMI) model for gas atom scattering from a flexible surface is proposed and applied. This model is a direct extension of the washboard model [J. Chem. Phys. 92, 680 (1990)] proposed for gas atom scattering from relatively rigid, corrugated surfaces. In addition, a moment of inertia is incorporated in the original washboard model to describe the flexibility of softer, more highly corrugated surfaces such as polymer or liquid surfaces. The moment of inertia of the effective surface object introduces a dependence of the efficiency of energy transfer on the position and direction of impact, a feature that has been shown to be critical by molecular dynamics simulations. The WBMI model is solved numerically by Monte Carlo integration, which makes the implementation of multiple impacts between a colliding atom and the surface very efficient. The model is applied to Ne and Ar atoms scattering from an alkylthiolate self-assembled monolayer surface and reproduces the major results obtained by classical trajectory simulation of the same system, i.e., a bimodal translation energy distribution P(E(f)) with the low-energy component well-fit with a Boltzmann distribution, but with a temperature that may (Ar) or may not (Ne) be the same as the surface temperature. This indicates that the WBMI model, with well-motivated physical assumptions and simplified interaction, reveals many of the major aspects of the gas-surface collision dynamics, though it does not take into account the real-time dynamics explicitly.

Atomistic molecular dynamics simulations of chemical force microscopy.

Chemical force microscopy and related force measurement techniques have emerged as powerful tools for studying fundamental interactions central to understanding adhesion and tribology at the molecular scale. However, detailed interpretation of these interactions requires knowledge of chemical and physical processes occurring in the region of the tip-sample junction that experiments cannot provide, such as atomic-scale motions and distribution of forces. In an effort to address some of these open issues, atomistic molecular dynamics simulations were performed modeling a chemical force microscope stylus covered with a planar C12 alkylthiolate self-assembled monolayer (SAM) interacting with a solid wall. A complete loading-unloading sequence was simulated under conditions of near-constant equilibrium, approximating the case of infinitely slow tip motion. In the absence of the solid wall, the stylus film existed in a fluid state with structural and dynamic properties similar to those of the analogous planar SAM at an elevated temperature. When the wall was brought into contact with the stylus and pressed against it, a series of reversible changes occurred culminating with solidification of the SAM film at the largest compressive force. During loading, the chemical composition of the contact changed, as much of the film's interior was exposed to the wall. At all tip heights, the distribution of forces within the contact zone was uneven and subject to large local fluctuations. Analysis using the Johnson-Kendall-Roberts, Derjaguin-Muller-Toporov, and Hertz contacts mechanics models revealed significant deviations from the simulation results, with the JKR model providing best overall agreement. Some of the discrepancies found would be overlooked in an actual experiment, where, unlike the simulations, contact area is not separately known, possibly producing a misleading or incorrect interpretation of experimental results. These shortcomings may be improved upon by using a model that correctly accounts for the finite thickness of the compliant components and nonlinear elastic effects.

Overlayers of Long-Chain Organic Molecules Physisorbed on the Surface of Self-Assembled Monolayers of Alkylthiols on Au(111)

We have been able to grow well-ordered crystalline overlayers of either alkylthiols or dodecane on the surface of self-assembled monolayers (SAMs) of alkylthiols on Au(111) by exposing the surface ...