Marine protected areas have long been proposed as a key tool to restore lost food web interactions and increase the resilience of ecosystems to climate change impacts. However, a changing climate can result in the arrival of new species or differentially affect native species, which can alter ecosystem dynamics and make it difficult to predict how ecosystems will respond to protection. The long-spined sea urchin Centrostephanus rodgersii is a well-known range extender with large impacts on kelp forest ecosystems, yet its response to warming and long-term marine protection has not been examined within its native range. We examine long-term trends in C. rodgersii and the endemic sea urchin Evechinus chloroticus following no-take protection within the Poor Knights Islands Marine Reserve, in northeastern Aotearoa New Zealand, from 1999-2022, and compare with population trends at an unprotected island group. Within the marine reserve, E. chloroticus decreased in density, became more cryptic, and urchin barrens associated with this species largely disappeared, whereas in fished areas, populations and extent of barrens remained stable. This differing response between the reserve and fished location is consistent with a top-down effect and greater abundance of predatory fish in the reserve. In contrast, the subtropical sea urchin C. rodgersii increased in abundance by 9.3 times in the Poor Knights Island Marine Reserve and 4.3 times at the fished location, with areas of urchin barrens associated with this species developing at both locations. This increase coincides with substantial warming over the monitoring period (0.25°C decade-1) and low numbers of key predators (rock lobster) at both reserve and fished locations. This highlights the emerging threat of C. rodgersii to rocky reefs in the region and how marine protection alone may not increase resilience to this threat. This suggests multifaceted management approaches are needed to mitigate the impacts of emerging pest species and increase the resilience of temperate reef ecosystems in a warming climate.
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