The evolution of a turbulent boundary layer over truncated cones in staggered and random configurations is investigated using direct numerical simulations. Three random planform densities and one staggered, which closely match the configuration in the recent experiment by Womack et al. (J. Fluid Mech., vol. 933, 2022, A38), are considered. The experiment is also used to validate the present computations which are found to reproduce the flow measurements very accurately. Spanwise heterogeneity in the mean streamwise velocity in the form of high and low momentum pathways was detected in both the staggered and random arrangements, indicating the presence of secondary flows in the cross-stream plane. The momentum pathways found in the staggered arrangements are much weaker and confined near the roughness crest, while in the random arrangements they approach the edge of the boundary layer. We found a clear correlation of the momentum pathways with the leading edge of the roughness, while the correlation to the local topography was very weak for all the cases studied. Vorticity transport analysis is also employed to explore the nature of the secondary flows formed, highlighting the strong presence of vortex stretching near the leading edge of the roughness. The impact of the momentum pathways on the flow statistics, especially in the random arrangements, is demonstrated by the breakdown of outer-layer similarity.
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