Water quality monitoring in coastal areas and estuaries poses significant challenges due to the intricate interplay of hydrodynamic, chemical, and biological processes, regardless of the chosen monitoring methods. In this study, we analyzed the applicability of different monitoring sources using in situ data, uncrewed-aerial-vehicle (UAV)-mounted hyperspectral sensing, and Sentinel-2-based multispectral imagery. In the first part of the study, we evaluated the applicability of existing empirical algorithms for water quality (WQ) parameter retrieval using hyperspectral, simulated multispectral, and satellite multispectral datasets and in situ measurements. In particular, we focused on three optically active WQ parameters: chlorophyll a (Chl,a), turbidity (TUR), and colored dissolved organic matter (CDOM) in oligotrophic coastal waters. We observed that most existing algorithms performed poorly when applied to different reflectance datasets, similar to previous findings in small and optically complex water bodies. Hence, we proposed a novel set of locally based empirical algorithms tailored for determining water quality parameters, which constituted the second part of our study. The newly developed regression-based algorithms utilized all possible combinations of spectral bands derived from UAV-generated hyperspectral data and exhibited coefficients of determination exceeding 0.9 for the three considered WQ parameters. The presented two-part approach was demonstrated in the semi-enclosed area of Kaštela Bay and the Jadro River estuary in the Central Eastern Adriatic Sea. This study introduces a promising and efficient screening method for UAV-based water quality monitoring in coastal areas worldwide. Such an approach may support decision-making processes related to coastal management and ultimately contribute to the conservation of coastal water ecosystems.
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