Reef-associated Communities Research Articles

Shifting reef restoration focus from coral survivorship to biodiversity using Reef Carpets

To enhance the practice of farmed-coral transplantation, we conducted a trial of an approach called “Reef Carpets” (RC), which draws inspiration from the commercial turf-grass sod in land-based lawn gardening. Three 8.4m2 RCs were established on a sandy seabed, containing preselected combinations of branching corals (Acropora cf. variabilis, Pocillopora damicornis, Stylophora pistillata) with nursery recruited dwellers, and were monitored for 17-months. Corals within RCs grew, supported coral recruitment and offered ecological habitats for coral-associated organisms. While the unstable sediment underneath the RCs increased corals’ partial mortalities, corals managed to grow and propagate. The extent of fish and gastropods corallivory varied among the coral species and planulation of Stylophora transplants was significantly higher than same-size natal-colonies. The RCs provided conducive environments for fish/invertebrate communities (183 taxa), and each coral species influenced specifically species-diversity and reef-associated communities. Even dead corals played crucial roles as habitats for reef biota, sustaining >80% of the RCs diversity; hence, they should not be considered automatically as indicators of failure. RCs scaled-up reef restoration and generated, in short periods, new reefs in denuded zones with enhanced biodiversity. Yet, RCs employment on soft-beds could be improved by using more structured artificial frameworks, requiring further research efforts.

Inferring True Species Richness and Complete Abundance Distribution in Six Reef-fish Communities from Red-sea, Using the Numerical Extrapolation of Incomplete Samplings

Even when ecological communities are incompletely sampled (which is most frequent in practice, at least for species-rich assemblages including many rare species), it remains possible to retrieve much more information than could be expected first, by applying numerical extrapolation to incomplete field data. Indeed, recently developed procedures of numerical extrapolation of partial samplings now allow to estimate, with fair accuracy, not only the number of the still unrecorded species but, moreover, the distribution of abundances of each of these unrecorded species, thereby making available the full range of the Species Abundance Distribution, despite dealing with incomplete data only. In turn, this allows to address a series of descriptive and functional aspects of the internal organization of species assemblages, which otherwise would have required disposing of truly exhaustive samplings.
 This approach is applied, here, to the previously reported partial samplings of six neighboring reef-fish communities from Tiran Island, Red Sea, with the goal of better understanding their internal organization in relation to their respective environments.
 In practice, the numerical completion contributes to avoid erroneous interpretations that would likely stem from considering only the incomplete field data. This point is especially relevant when studying reef-associated communities because accurate understanding of their organization will help guiding and refining at best the protective measures required by these particularly vulnerable communities.

Movement patterns of juvenile hawksbill turtles Eretmochelys imbricata at a Caribbean coral atoll: long-term tracking using passive acoustic telemetry

ESR Endangered Species Research Contact the journal Facebook Twitter RSS Mailing List Subscribe to our mailing list via Mailchimp HomeLatest VolumeAbout the JournalEditorsSpecials ESR 32:309-319 (2017) - DOI: https://doi.org/10.3354/esr00812 Movement patterns of juvenile hawksbill turtles Eretmochelys imbricata at a Caribbean coral atoll: long-term tracking using passive acoustic telemetry Megan G. Chevis1,2, Brendan J. Godley1, James P. Lewis3, Julie Jackson Lewis2, Kylie L. Scales4,5, Rachel T. Graham2,* 1Centre for Ecology and Conservation, University of Exeter, Penryn Campus, TR10 9EZ, UK 2MarAlliance, 32 Coconut Drive/PO Box 283, San Pedro, Ambergris Caye, Belize 3Amphibian Survival Alliance, International Conservation House, 7078 Airlie Road, Warrenton, VA 20187, USA 4Institute of Marine Sciences, University of California, Santa Cruz, CA 95064, USA 5NOAA Southwest Fisheries Center, Environmental Research Division, 99 Pacific Street, Suite #255A, Monterey, CA 93950, USA *Corresponding author: rachel@maralliance.org ABSTRACT: Understanding the ecological interactions that underlie marine ecosystem functioning requires sufficient data describing habitat use by mobile species. Hawksbill turtles Eretmochelys imbricata are considered a key species in coral reef-associated communities, owing to their specific foraging preferences, yet new information is still revealing details of the spatial and temporal aspects of habitat use. We used passive acoustic telemetry to monitor the movements of 18 juvenile hawksbills (minimum curved carapace length: 32.0-59.7 cm, mean ± SD = 43.9 ± 6.7 cm) at a developmental foraging site in a Mesoamerican barrier reef, Lighthouse Reef Atoll in Belize (tracking duration 10-1414 d, mean ± SD = 570 ± 484 d). Although specific home ranges were difficult to quantify, several turtles showed high site fidelity over timescales of months to years, with occasional wide-ranging use of the atoll. Diel variation in the number of detections received strongly suggest nocturnal resting. Long-term tracking data reveal 3 degrees of site fidelity across the atoll, based on the number of detection days near individual stations: high residency (n = 4 turtles), sequential residency (n = 5), and transient behavior (n = 4). These variations in movement raise questions about the differentiation of foraging habitats and degree of individual specialization within this population, as well as the influences of microhabitats and human disturbance. KEY WORDS: Spatial ecology · Home range · Belize · Habitat use · Site fidelity · Marine megafauna · World Heritage Site Full text in pdf format Supplementary material PreviousNextCite this article as: Chevis MG, Godley BJ, Lewis JP, Jackson Lewis J, Scales KL, Graham RT (2017) Movement patterns of juvenile hawksbill turtles Eretmochelys imbricata at a Caribbean coral atoll: long-term tracking using passive acoustic telemetry. Endang Species Res 32:309-319. https://doi.org/10.3354/esr00812 Export citation RSS - Facebook - Tweet - linkedIn Cited by Published in ESR Vol. 32. Online publication date: March 28, 2017 Print ISSN: 1863-5407; Online ISSN: 1613-4796 Copyright © 2017 Inter-Research.

Effect of angling intensity on feeding behaviour and community structure of subtropical reef-associated fishes

Baited hooks used in angling may influence foraging behaviour and trophic interactions among reef fishes, which may be reinforced over successive generations. In contrast to other scavenging opportunities involving pulsed resources (e.g. food falls), there is an asymmetric susceptibility to becoming hooked for species and size classes. The resulting effect may provoke behavioural changes in reef fishes through cognitive or phenotypic selective processes. We investigated the effects of angling pressure on the feeding behaviour and community structure of reef-associated fishes using a novel underwater video approach. Fish community and behavioural responses to simulated angling baits were assessed at paired sites of contrasting angling pressure at Amity Point and Ballina, on the east coast of Australia from late 2013 to 2014. Bait introduction differentially influenced trophic interactions of reef-associated communities according to angling intensity regime. Locations with higher angling pressure correlated with increased feeding hesitation among potentially capture-susceptible species, most notably Acanthopagrus australis. The feeding hierarchy of less dominant feeders and their interactions also differed compared with those exhibited under lower angling intensity regimes. Specifically, smaller opportunistic feeders (e.g. Microcanthus strigatus) that could utilise angling bait for dietary supplementation without risk of being hooked were able to maintain higher feeding ranks in areas subject to high angling pressure due to reduced interference competition from larger species, e.g. A. australis. We discuss the potential for complex ecological effects to follow from high-intensity angling activities and highlight the potentially confounding effects of using bait as a focus for fish assemblage monitoring.

Simplification of Caribbean reef-fish assemblages over decades of coral reef degradation.

Caribbean coral reefs are becoming structurally simpler, largely due to human impacts. The consequences of this trend for reef-associated communities are currently unclear, but expected to be profound. Here, we assess whether changes in fish assemblages have been non-random over several decades of declining reef structure. More specifically, we predicted that species that depend exclusively on coral reef habitat (i.e., habitat specialists) should be at a disadvantage compared to those that use a broader array of habitats (i.e., habitat generalists). Analysing 3727 abundance trends of 161 Caribbean reef-fishes, surveyed between 1980 and 2006, we found that the trends of habitat-generalists and habitat-specialists differed markedly. The abundance of specialists started to decline in the mid-1980s, reaching a low of ~60% of the 1980 baseline by the mid-1990s. Both the average and the variation in abundance of specialists have increased since the early 2000s, although the average is still well below the baseline level of 1980. This modest recovery occurred despite no clear evidence of a regional recovery in coral reef habitat quality in the Caribbean during the 2000s. In contrast, the abundance of generalist fishes remained relatively stable over the same three decades. Few specialist species are fished, thus their population declines are most likely linked to habitat degradation. These results mirror the observed trends of replacement of specialists by generalists, observed in terrestrial taxa across the globe. A significant challenge that arises from our findings is now to investigate if, and how, such community-level changes in fish populations affect ecosystem function.

BIOTIC AND ENVIRONMENTAL ORIGINS OF THE SOUTHEAST ASIAN MARINE BIODIVERSITY HOTSPOT: THE THROUGHFLOW PROJECT

The present-day global maximum for marine biodiversity has been located in Southeast Asia since at least the earliest Miocene. The history of biota in the region has been inferred from the present-day biogeography and phylogeny of extant organisms, but these analyses do not provide adequate tests of the various hypotheses proposed for the origins of the diversity hotspot. The papers in this special issue present the results of an interdisciplinary research project designed to reconstruct the history of shallow marine biota and habitats within the hotspot and help understand the ecological context responsible for the maintenance of the diverse regional biota. A series of remarkably complete and fresh exposures were studied from the Kutai Basin (East Kalimantan, Indonesia) that included thick lower to upper Miocene sections of deltaic and marine sediments including abundant and extremely well preserved fossils. New stratigraphic and environmental frameworks allowed comparison of biota from habitats ranging from shelf-edge reefs to nearshore shallow seagrass meadows and coral carpets. Diversity was overall high throughout the interval, especially when compared to diversity in similar modern turbid mixed carbonate-siliciclastic settings. This points to the previously unrecognized importance of these mesophotic habitats for the development of the diverse reef-associated communities in the modern-day hotspot.

A Comparison ofCrassostrea virginicaandC. ariakensisin Chesapeake Bay: Does Oyster Species Affect Habitat Function?

We examined the possibility that a nonnative oyster species would provide an ecologically functional equivalent of the native oyster species if introduced into the Chesapeake Bay. Habitat complexity and associated benthic communities of experimental triploid Crassostrea virginica and Crassostrea ariakensis reefs were investigated at 4 sites of varying salinity, tidal regime, water depth, predation intensity, and disease pressure in the Chesapeake Bay region (Maryland and Virginia). Four experimental treatments were established at each site: C. virginica, C. ariakensis, 50:50 of C. virginica and C. ariakensis, and shell only. Abundance, biomass, species richness, evenness, dominance, and diversity of reef-associated fauna were evaluated in relation to habitat location and oyster species. Although habitat complexity varied with location, no differences among complexity were associated with oyster species. Similarly, differences in faunal assemblages were more pronounced between sites than within sites. Our results show functional equivalency between oyster species with respect to habitat at the intertidal site and the low-salinity subtidal location. At subtidal sites of higher salinity, however, the numbers of organisms associated with C. virginica reefs per unit of oyster biomass were significantly greater than the numbers of organisms associated with C. ariakensis reefs. Multivariate analyses of data from subtidal high-salinity sites revealed unique communities associated with C. virginica treatments, whereas mixed-oyster species assemblages were functionally equivalent to monospecific C. ariakensis experimental treatments. Our study represents the first effort to quantify the potential habitat function of C. ariakensis, which has been proposed for an intentional introduction into Chesapeake Bay, and provides evidence of species-specific similarities and differences in reef-associated communities.

Faunal utilization of constructed intertidal oyster ( Crassostrea rivularis) reef in the Yangtze River estuary, China

An intertidal oyster reef (∼260 ha) was created by planting hatchery-reared seed oysters ( Crassostrea rivularis) on an artificial concrete modular reef in the Deepwater Navigation Channel Regulation Project of the Yangtze River estuary. We examined the development of reef communities (oyster, barnacle and motile epibenthic macrofauna), characterized nekton use and assessed the habitat value of the constructed reef. The C. rivularis oyster population showed a rapid exponential increase with time and reached maximum density (3410 ± 241 ind./m 2) and biomass (3175 ± 532 g/m 2) after one year of restoration. The barnacle Balanus albicostatus was the most abundant sessile macrofauna and had a significantly greater density in the high intertidal zone than in the low intertidal zone ( P < 0.05). The reef also supported diverse motile epibenthic macrofauna (11 mollusks, 11 crustaceans, 4 annelids and 2 fishes), and the reef-associated communities were numerically dominated by Neanthes japonica, Perinereis aibuhitensis, Nerita yoldi and Littorinopsis intermedia. A total of 50 nekton species (31 fishes, 9 shrimps and 10 crabs) utilized the constructed intertidal oyster reef, and grass shrimp Palaemon spp. dominated the nekton communities in term of abundance. Since the constructed intertidal oyster reef supports a variety of reef communities and abundant nektons, it should be recognized as an important and protective fish habitat in the Yangtze River estuary.

Eastern oysters (Crassostrea virginica) as an indicator for restoration of Everglades Ecosystems

The Comprehensive Everglades Restoration Plan (CERP) attempts to restore hydrology in the Northern and Southern Estuaries of Florida. Reefs of the Eastern oyster Crassostrea virginica are a dominant feature of the estuaries along the Southwest Florida coast. Oysters are benthic, sessile, filter-feeding organisms that provide ecosystem services by filtering the water column and providing food, shelter and habitat for associated organisms. As such, the species is an excellent sentinel organism for examining the impacts of restoration on estuarine ecosystems. The implementation of CERP attempts to improve: the hydrology and spatial and structural characteristics of oyster reefs, the recruitment and survivorship of C. virginica, and the reef-associated communities of organisms. This project links biological responses and environmental conditions relative to hydrological changes as a means of assessing positive or negative trends in oyster responses and population trends. Using oyster responses, we have developed a communication tool (i.e., Stoplight Report Card) based on CERP performance measures that can distinguish between responses to restoration and natural patterns. The Stoplight Report Card system is a communication tool that uses Monitoring and Assessment Program (MAP) performance measures to grade an estuary's response to changes brought about by anthropogenic input or restoration activities. The Stoplight Report Card consists of both a suitability index score for each organism metric as well as a trend score (− decreasing trend, +/− no change in trend, and + increasing trend). Based on these two measures, a component score (e.g., living density) is calculated by averaging the suitability index score and the trend score. The final index score is obtained by taking the geometric score of each component, which is then translated into a stoplight color for success (green), caution (yellow), or failure (red). Based on the data available for oyster populations and the responses of oysters in the Caloosahatchee Estuary, the system is currently at stage “caution.” This communication tool instantly conveys the status of the indicator and the suitability, while trend curves provide information on progress towards reaching a target. Furthermore, the tool has the advantage of being able to be applied regionally, by species, and collectively, in concert with other species, system-wide.

Estimating the species number and cover of a mangrove-root community: a comparison of methods

Methods and designs have been validated for sampling coral reefs and reef-associated communities, but the accuracy and equivalence of results obtained from studies of mangrove-root communities can not be assured. Thus, it is convenient to establish the accuracy and reliability of sampling methods on a practical basis. Line interception, point interception, and quadrat sampling were used to estimate several basic features of the community associated with mangrove roots. Species-number estimates, cover estimates, sampling efforts, and some statistical properties of the three methods were compared. A sampling design should be chosen if it yields estimates with the greatest accuracy at the lowest cost. Results showed that sampling of mangrove roots could start by using 4 × 4-cm quadrats with a mean sample size of 50 for detecting the number of species, and for establishing species cover it appears that the point-interception method with a sample size of 50 would be appropriate. The effort involved in such a sequence would be approximately 10 h for 20 roots. This combined strategy is clearly laborious and time-consuming in comparison with the use of just a 200-point interception, which would require only 3.25 h for the same number of roots. Although it would cost more than the above methods, a fast and accurate technique based upon existing computer hardware to estimate cover from photographic or video material would result in a census of the whole community. This might prove to be a reliable way to approach the problem.