Weyl group multiple Dirichlet series are Dirichlet series in r complex variables, with analytic continuation to Cr and a group of functional equations isomorphic to the Weyl group of a reduced root system of rank r. Such series may be defined for any global field K, but in the case when K is an algebraic function field they are expected to be, up to a variable change, rational functions in several variables. We verify the rationality of these functions in the case when K=Fq(T), and describe the denominators and support of the numerators.