Beef Quality Traits Research Articles

Association of an EGFLAM non-synonymous polymorphism with marbling in Limousin cattle.

Marbling is one of the most important beef quality traits. An association between a non-synonymous variant located in EGFLAM (EGF-like fibronectin and laminin G) and marbling in Hanwoo cattle has recently been published. We therefore investigated the association between this SNP (rs109436056 SNP) and marbling in Limousin cattle. A total of 355 animals were phenotyped for marbling and genotyped for this SNP. Significant association (p < 0.05) was observed, in which genotype CC exhibited higher marbling. This SNP could be used for the genetic improvement of marbling in Limousin cattle.

Leveraging Functional Genomics for Understanding Beef Quality Complexities and Breeding Beef Cattle for Improved Meat Quality.

Consumer perception of beef is heavily influenced by overall meat quality, a critical factor in the cattle industry. Genomics has the potential to improve important beef quality traits and identify genetic markers and causal variants associated with these traits through genomic selection (GS) and genome-wide association studies (GWAS) approaches. Transcriptomics, proteomics, and metabolomics provide insights into underlying genetic mechanisms by identifying differentially expressed genes, proteins, and metabolic pathways linked to quality traits, complementing GWAS data. Leveraging these functional genomics techniques can optimize beef cattle breeding for enhanced quality traits to meet high-quality beef demand. This paper provides a comprehensive overview of the current state of applications of omics technologies in uncovering functional variants underlying beef quality complexities. By highlighting the latest findings from GWAS, GS, transcriptomics, proteomics, and metabolomics studies, this work seeks to serve as a valuable resource for fostering a deeper understanding of the complex relationships between genetics, gene expression, protein dynamics, and metabolic pathways in shaping beef quality.

Improving market (cull) dairy cows carcass traits and meat quality

Despite a high volume of market (cull) dairy cows entering the food chain every year, beef from market dairy cows is largely considered insignificant when compared with beef from beef cattle in the market and is widely thought to be used for ground beef only. Our study aimed to evaluate the effects of feeding dairy market cows on a lactating TMR diet before slaughter on carcass and beef quality traits. Forty-three Holstein market cows were randomly assigned into 2 treatments: Fed or Direct. Fed cows (n = 22) were dried off, then fed a lactating cow TMR ration for approximately 60 d whereas Direct cows (n = 21) were sent directly to slaughter. Hot carcass weight (HCW) was used to calculate the dressing percentage (DP) together with the animals' body weight recorded when animals left the farm to go to the abattoir. At 24h post-mortem, the rib fat thickness (RFT) and rib eye area (REA) were measured by a certified grader. Afterward, rib samples were collected between the 12th -10th ribs from one side of the carcass and divided into 5 ribeye steaks. The first steak was used for intramuscular fat (IMF) content analysis by NIRS. The other 4 steaks were then aged for 7, 14, 21, or 28 d. Following aging, the steaks available were assessed for tenderness using the Warner-Bratzler Shear Force protocol. Data were analyzed by mixed linear regression to compare experimental groups for continuous outcomes. HCW of the Fed cows was higher than the Direct cows, with a mean HCW of 408.3 kg and 326.1 kg, respectively (SE ± 9.0). Average DP in Fed cows was 49.1%, compared with 42.5% in Direct cows (SE ± 0.69). The average percentage of IMF in Fed cows was 8.1% and in Direct cows was 5.0% (SE ± 0.43). Fed cows had a mean REA of 68.1 cm2 and Direct cows had a mean of 57.7 cm2 (SE ± 11.9). No differences were found for RFT. The steaks aged for 14 d resulted in meat with a mean shear force (SF) of 4.19 kg in Fed cows, while Direct cows had a mean SF of 6.28 kg (SE ± 0.29) Feeding market dairy cows for 60 d before slaughter enhanced carcass weight and yield, IMF content, and tenderness. These results indicate that approximately 60 d of feeding can improve the quality of market dairy cow meat and may help improve market cow value.

Genetic Markers Related to Meat Quality Properties in Fattened HF and HF x Charolaise Steers.

This study involved 45 Holstein and 60 Holstein-Charolaise steers, tailored with specific diets according to breed and rearing systems. DNA genotyping was conducted for DGAT1, LEP, SCD1, SREBF1, and TG genes to investigate their impact on carcass conformation traits, beef quality traits, and sensory quality traits. The results showed associations between the genetic variants and the analyzed traits. Specifically, DGAT1 was found to affect drip loss, meat brightness, and color saturation. The TG gene was associated with marbling and meat color. LEP influenced trim fat and pH levels, while SCD1 was linked to metabolic energy live weight gains, and pH levels. SREBF1 was related to fatness.

Depth of Interbreed Difference in Postmortem Bovine Muscle Determined by CE-FT/MS and LC-FT/MS Metabolomics.

Japanese Brown (JBR) cattle have moderately marbled beef compared to the highly marbled beef of Japanese Black (JBL) cattle; however, their skeletal muscle properties remain poorly characterized. To unveil interbreed metabolic differences over the previous results, we explored the metabolome network changes before and after postmortem 7-day aging in the trapezius muscle of the two cattle breeds by employing a deep and high-coverage metabolomics approach. Using both capillary electrophoresis (CE) and ultra-high-performance liquid chromatography (UHPLC)-Fourier transform mass spectrometry (FT/MS), we detected 522 and 384 annotated peaks, respectively, across all muscle samples. The CE-based results showed that the cattle were clearly separated by breed and postmortem age in multivariate analyses. The metabolism related to glutathione, glycolysis, vitamin K, taurine, and arachidonic acid was enriched with differentially abundant metabolites in aged muscles, in addition to amino acid (AA) metabolisms. The LC-based results showed that the levels of bile-acid-related metabolites, such as tauroursodeoxycholic acid (TUDCA), were high in fresh JBR muscle and that acylcarnitines were enriched in aged JBR muscle, compared to JBL muscle. Postmortem aging resulted in an increase in fatty acids and a decrease in acylcarnitine in the muscles of both cattle breeds. In addition, metabolite set enrichment analysis revealed that JBR muscle was distinctive in metabolisms related to pyruvate, glycerolipid, cardiolipin, and mitochondrial energy production, whereas the metabolisms related to phosphatidylethanolamine, nucleotide triphosphate, and AAs were characteristic of JBL. This suggests that the interbreed differences in postmortem trapezius muscle are associated with carnitine/acylcarnitine transport, β-oxidation, tricarboxylic acid cycle, and mitochondrial membrane stability, in addition to energy substrate and AA metabolisms. These interbreed differences may characterize beef quality traits such as the flavor intensity and oxidative stability.

Phenotypic relationships between meat quality parameters and residual feed intake in Japanese black Wagyu cattle.

Japanese black Wagyu cattle are renowned for producing some of the world's most highly valued and recognized beef with exceptional marbling. Therefore, the primary focus of genetic selection for Wagyu cattle has historically been on meat quality, particularly achieving high marbling levels. However, even when the price of the final product is high, production costs also remain high, especially considering that most of the feed has to be imported. The objective of this study was to evaluate phenotypic relationships between feed efficiency, specifically residual feed intake (RFI), as the most utilized efficiency index in cattle, and various meat quality parameters in Japanese black cattle in order to determine if a common phenotypic selection for these parameters could be feasible. For this, a total of 39 Wagyu cattle were evaluated for feed efficiency over their entire fattening period (900d), with a focus on RFI as a key indicator. Animals were fed high-starch diets with vitamin A deprivation to achieve the desired marbling. Results revealed positive correlations between feed efficiency and meat quality in Wagyu cattle. Specifically, animals with higher feed efficiency exhibited superior meat quality traits, including firmness, marbling, and overall meat rating. When comparing the 20 most extreme RFI individuals (10 most and 10 least efficient), we observed that efficient RFI animals showed increased marbling levels (+13.2%, P = 0.05) and ranking quality (+12%, P = 0.06) of the meat. In conclusion, this research contributes to understanding the interplay between feed efficiency and meat quality in Japanese black Wagyu cattle. Phenotypic correlations observed suggest the possibility of incorporating RFI criteria into genetic selection programs without compromising the prized meat quality traits of Wagyu beef.

PSIX-19 Association of the Rumen Microbiota with Carcass Merit and Beef Quality

Abstract The microbial community in the rumen has an important role in the health and production of beef cattle providing up to 70% of the daily energy requirements from the metabolism of otherwise non-digestible dietary carbohydrates. Diet is often the largest determinant of rumen microbiome composition, but it is also affected by host age, genetics, and sex. Performance attributes such as average daily gain and feed efficiency have all been linked to the rumen microbiome and recent studies with relatively small numbers of cattle have also suggested there may be an association with certain beef quality traits such as marbling, which largely determines the carcass value. Thus, the objective of this study was to evaluate the association of the rumen microbiota with carcass merit and beef quality traits. Two hundred steers were slaughtered, and rumen samples were collected immediately post-slaughter. Subsequently, carcass merit and meat quality attributes were evaluated. The rumen microbiota of these animals was then characterized using 16S rRNA gene sequencing. Although we did not identify a significant association between marbling score and the structure of the rumen microbiota (PERMANOVA; P &amp;gt; 0.05), there were significant associations between rumen microbial community structure and commercial weight, dressed weight percentage, drip loss, and intramuscular fat content (P &amp;lt; 0.05). There were also individual bacterial taxa that were correlated with various carcass merit and beef quality traits. Members of the Acidaminococcus genus were negatively associated with both intramuscular fat content and marbling score (P &amp;lt; 0.10) while Coprococcus, Christensenellaceae R-7 group, Lachnospiraceae NK3A20 group, Moryella, and Prevotella were among those genera positively correlated with intramuscular fat content (P &amp;lt; 0.10). Christensenellaceae R-7 group, Lachnospiraceae NK3A20 group, Moryella, and Prevotella were also significantly associated with dressed weight percentage. Commercial weight was positively correlated with the genera Catonella, Prevotellaceae NK3B31 group, Pseudoramibacter, Selenomonas, and Sutterella and negatively associated with Oribacterium and Ruminococcaceae UCG-001 (P &amp;lt; 0.10). Therefore, bacteria within these genera may be ideal targets for future microbiome-based strategies to improve carcass merit and beef quality.

Functional in silico analysis of a non-synonymous SNP located in the coding region of the FASN gene in Korean native cattle

Bovine fatty acid synthase, an enzyme encoded by the FASN gene in cattle, is a multi-enzyme protein that catalyses fatty acid synthesis. This cytosolic enzyme catalyzes the synthesis of palmitate from acetylcoenzyme A and malonyl-coenzyme A in the presence of nicotinamide adenine dinucleotide phosphate (NADPH). However, there is no previous verification study that each allele of SNPs related to lipid synthesis were impact on protein function in Korean native cattle and nsSNPs for the FASN gene have not yet been verified by computer analysis. Given the role of the FASN gene in beef quality traits in cattle, the study aimed to use computational analysis to narrow down the candidate nsSNPs for FASN that may affect protein structure and/or function, which may play an important role in lipid synthesis. These results predicted that the g.16039 T&gt;C nsSNP at position R1957Y of FASN was functionally 'Deleterious' and 'PROBABLY DAMAGING' in non-synonymous SNP functional analysis, and the g.16039 T&gt;C and g.17924 A&gt;G nsSNPs at positions R1957Y and T2266A decrease the stability of a FASN protein and have two PTM sites for proteolytic cleavage and amidation. In addition, the R1957Y and T2266A variants of FASN were shown to have a direct effect on altering the protein structure. Therefore, we suggested that our results could be used as fundamental data for further studies related to functional verification of nsSNPs based on bovine cells.

Animal performance, carcass characteristics and beef quality of steers fed with a whole oat or maize grain-based diet

Aim of study: We evaluated the use of oat grain as an alternative source of energy to maize grain in high energy finishing diets. Maize crop production in arid and semi-arid areas is poor or non-existent. Thus, small grains such as oats have become an alternative in high energy rations due to their versatility and ease of cultivation. Area of study: Semiarid region of Buenos Aires province, Argentina Material and methods: Sixteen Angus steers were randomly assigned to two dietary treatments based on whole oats grain (OD) or whole maize grain (MD) for 61 days. Diets were formulated iso-nitrogenous and iso-energetic. Animal performance, carcass attributes and beef quality traits were evaluated. Longissimus thoracis steaks were wet-aged at 4°C for either 4 or 14 days. Main results: Similar results were found between OD and MD for the variables of performance, carcass evaluation and water retention in fresh meat. No interactions between diet and ageing period were found for any of the variables evaluated. The MD beef was lighter and had a redder appearance than the OD beef. The 4 days-aged beef showed higher values of L*, a* and b* and was more saturated than the 14 days-aged beef. However, the perception of beef colour by the human eye, evaluated through the CIEDE2000 metric, showed no differences among diets and ageing periods. Research highlights: Oat grain could be used in replacement of maize grain as an energy source in fattening rations of beef cattle, obtaining similar animal performance and meat quality.

Molecular mechanisms contributing to the development of beef sensory texture and flavour traits and related biomarkers: Insights from early post-mortem muscle using label-free proteomics

Beef sensory quality comprises a suite of traits, each of which manifests its ultimate phenotype through interaction of muscle physiology with environment, both in vivo and post-mortem. Understanding variability in meat quality remains a persistent challenge, but omics studies to uncover biological connections between natural variability in proteome and phenotype could provide validation for exploratory studies and offer new insights. Multivariate analysis of proteome and meat quality data from Longissimus thoracis et lumborum muscle samples taken early post-mortem from 34 Limousin-sired bulls was conducted. Using for the first-time label-free shotgun proteomics combined with liquid chromatography-tandem mass spectrometry (LC-MS/MS), 85 proteins were found to be related with tenderness, chewiness, stringiness and flavour sensory traits. The putative biomarkers were classified in five interconnected biological pathways; i) muscle contraction, ii) energy metabolism, iii) heat shock proteins, iv) oxidative stress, v) regulation of cellular processes and binding. Among the proteins, PHKA1 and STBD1 correlated with all four traits, as did the GO biological process ‘generation of precursor metabolites and energy’. Optimal regression models explained a high level (58–71%) of phenotypic variability with proteomic data for each quality trait. The results of this study propose several regression equations and biomarkers to explain the variability of multiple beef eating quality traits. Thanks to annotation and network analyses, they further suggest protein interactions and mechanisms underpinning the physiological processes regulating these key quality traits. SignificanceThe proteomic profiles of animals with divergent quality profiles have been compared in numerous studies; however, a wide range of phenotypic variation is required to better understand the mechanisms underpinning the complex biological pathways correlated with beef quality and protein interactions. We used multivariate regression analyses and bioinformatics to analyse shotgun proteomics data to decipher the molecular signatures involved in beef texture and flavour variations with a focus on multiple quality traits. We developed multiple regression equations to explain beef texture and flavour. Additionally, potential candidate biomarkers correlated with multiple beef quality traits are suggested, which could have utility as indicators of beef overall sensory quality. This study explained the biological process responsible for determining key quality traits such as tenderness, chewiness, stringiness, and flavour in beef, which will provide support for future beef proteomics studies.

RNA-Seq Analysis Identifies Differentially Expressed Genes in the Longissimus dorsi of Wagyu and Chinese Red Steppe Cattle.

Meat quality has a close relationship with fat and connective tissue; therefore, screening and identifying functional genes related to lipid metabolism is essential for the production of high-grade beef. The transcriptomes of the Longissimus dorsi muscle in Wagyu and Chinese Red Steppe cattle, breeds with significant differences in meat quality and intramuscular fat deposition, were analyzed using RNA-seq to screen for candidate genes associated with beef quality traits. Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analysis showed that the 388 differentially expressed genes (DEGs) were involved in biological processes such as short-chain fatty acid metabolism, regulation of fatty acid transport and the peroxisome proliferator-activated receptor (PPAR) signaling pathway. In addition, crystallin alpha B (CRYAB), ankyrin repeat domain 2 (ANKRD2), aldehyde dehydrogenase 9 family member A1 (ALDH9A1) and enoyl-CoA hydratase and 3-hydroxyacyl CoA dehydrogenase (EHHADH) were investigated for their effects on intracellular triglyceride and fatty acid content and their regulatory effects on genes in lipogenesis and fatty acid metabolism pathways. This study generated a dataset from transcriptome profiling of two cattle breeds, with differing capacities for fat-deposition in the muscle, and revealed molecular evidence that CRYAB, ANKRD2, ALDH9A1 and EHHADH are related to fat metabolism in bovine fetal fibroblasts (BFFs). The results provide potential functional genes for maker-assisted selection and molecular breeding to improve meat quality traits in beef cattle.

Influence of Wet Ageing on Beef Quality Traits

Fresh samples of Longissimus thoracis of Charolais (n = 12), Romagnola (n = 15), Limousine (n = 77), and crossbreed (n = 62) animals were evaluated with different storage periods (0, 4, 9, and 14 days). Proximate analysis (i.e., pH, humidity, color, free water content, and physical parameters) was performed for each sample. The data obtained were evaluated with a mixed model, setting 5 fixed effects (breed, storage time, animals age, EUROP conformation, number of animal transports) and the animal as random. The results demonstrated that meat quality was affected mainly by the wet ageing period and that the visual and tactile parameters were also found to be susceptible to the storage time. The conservation entailed a decrease in meat humidity and an increase in L* and b* traits; it also led to a decrease in the hardness of the sample, in turn affecting the other texture profile analysis parameters considered. Fixed effects affected in different ways the traits analyzed i.e., pH and humidity changed with breed, as well as with EUROP classification, animals' age for some TPA parameters, and the number of animal transports for both visual and tactile parameters. Wet ageing influenced the meat quality, often improving it, confirming how important further research would be to identify precise storage times in relation to the parameters studied.

Differential Allele-Specific Expression Revealed Functional Variants and Candidate Genes Related to Meat Quality Traits in B. indicus Muscle

Traditional transcriptomics approaches have been used to identify candidate genes affecting economically important livestock traits. Regulatory variants affecting these traits, however, remain under covered. Genomic regions showing allele-specific expression (ASE) are under the effect of cis-regulatory variants, being useful for improving the accuracy of genomic selection models. Taking advantage of the better of these two methods, we investigated single nucleotide polymorphisms (SNPs) in regions showing differential ASE (DASE SNPs) between contrasting groups for beef quality traits. For these analyses, we used RNA sequencing data, imputed genotypes and genomic estimated breeding values of muscle-related traits from 190 Nelore (Bos indicus) steers. We selected 40 contrasting unrelated samples for the analysis (N = 20 animals per contrasting group) and used a beta-binomial model to identify ASE SNPs in only one group (i.e., DASE SNPs). We found 1479 DASE SNPs (FDR ≤ 0.05) associated with 55 beef-quality traits. Most DASE genes were involved with tenderness and muscle homeostasis, presenting a co-expression module enriched for the protein ubiquitination process. The results overlapped with epigenetics and phenotype-associated data, suggesting that DASE SNPs are potentially linked to cis-regulatory variants affecting simultaneously the transcription and phenotype through chromatin state modulation.

Use of Near-Infrared Spectroscopy to Discriminate DFD Beef and Predict Meat Quality Traits in Autochthonous Breeds.

The potential of near-infrared reflectance spectroscopy (NIRS) to discriminate Normal and DFD (dark, firm, and dry) beef and predict quality traits in 129 Longissimus thoracis (LT) samples from three Spanish purebreeds, Asturiana de los Valles (AV; n = 50), Rubia Gallega (RG; n = 37), and Retinta (RE; n = 42) was assessed. The results obtained by partial least squares-discriminant analysis (PLS-DA) indicated successful discrimination between Normal and DFD samples of meat from AV and RG (with sensitivity over 93% for both and specificity of 100 and 72%, respectively), while RE and total sample sets showed poorer results. Soft independent modelling of class analogies (SIMCA) showed 100% sensitivity for DFD meat in total, AV, RG, and RE sample sets and over 90% specificity for AV, RG, and RE, while it was very low for the total sample set (19.8%). NIRS quantitative models by partial least squares regression (PLSR) allowed reliable prediction of color parameters (CIE L*, a*, b*, hue, chroma). Results from qualitative and quantitative assays are interesting in terms of early decision making in the meat production chain to avoid economic losses and food waste.

Effect of genetic variants in the SMAD1 and SMAD5 genes promoter on growth and beef quality traits in cattle

The SMAD1 and SMAD5 genes belong to mothers against decapentaplegic proteins family, which participate in the BMP pathway to control skeletal myogenesis and growth. In the present study, we analyzed the associations between polymorphisms of SMAD1 and SMAD5 genes promoter and important economical traits in Qinchuan cattle. Four SNPs in the SMAD1 gene promoter and three SNPs in the SMAD5 promoter were identified by sequencing of 448 Qinchuan cattles. Allelic and frequency analyses of these SNPs resulted in eight haplotypes both in the promoters of the two genes promoter and identified potential cis-regulatory transcription factor (TF) components. In addition, correlation analysis showed that cattle SMAD1 promoter activity of individuals with Hap4 (P < 0.01) was stronger than that of individuals with Hap2. while the transcriptional activity of individuals with Hap3 within SMAD5 gene promoter was significantly (P < 0.01) higher followed by H2. Uniformly, diplotypes H4-H6 of SMAD1 gene and H1-H3 of SMAD5 gene performed significant (P < 0.01) associations with body measurement and improved carcass quality traits. All these results have indicated that polymorphisms in SMAD1 and SMAD5 genes promoter could impact the transcriptional regulation and then affect muscle content in beef cattle. Moreover, both the SMAD1 and SMAD5 genes were expressed ubiquitously in 10 tissues and had higher expression in the longissimus thoracis tissue from 6-month-old and 12-month-old cattle than in cattle of other ages. We can conclude that SMAD1 and SMAD5 genes may play an important role in muscle growth and development, and the variants mapped within SMAD1 and SMAD5 genes can be utilized in molecular marker-assisted selection for cattle carcass quality and body measurement traits in breed improvement programs of Qinchuan cattle.

Integrated Analysis of mRNA and MicroRNA Co-expressed Network for the Differentiation of Bovine Skeletal Muscle Cells After Polyphenol Resveratrol Treatment.

Resveratrol (RSV) has been confirmed to benefit human health. Resveratrol supplemented in the feeds of animals improved pork, chicken, and duck meat qualities. In this study, we identified differentially expressed (DE) messenger RNAs (mRNAs) (n = 3,856) and microRNAs (miRNAs) (n = 93) for the weighted gene co-expression network analysis (WGCNA) to investigate the co-expressed DE mRNAs and DE miRNAs in the primary bovine myoblasts after RSV treatment. The mRNA results indicated that RSV treatments had high correlations with turquoise module (0.91, P-value = 0.01) and blue module (0.93, P-value < 0.01), while only the turquoise module (0.96, P-value < 0.01) was highly correlated with the treatment status using miRNA data. After biological enrichment analysis, the 2,579 DE genes in the turquoise module were significantly enriched in the Gene Ontology (GO) terms and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathways. The top two GO terms were actin filament-based process (GO:0030029) and actin cytoskeleton organization (GO:0030036). The top two KEGG pathways were regulation of actin cytoskeleton (bta04810) and tight junction (bta04530). Then, we constructed the DE mRNA co-expression and DE miRNA co-expression networks in the turquoise module and the mRNA–miRNA targeting networks based on their co-expressions in the key module. In summary, the RSV-induced miRNAs participated in the co-expression networks that could affect mRNA expressions to regulate the primary myoblast differentiation. Our study provided a better understanding of the roles of RSV in inducing miRNA and of the characteristics of DE miRNAs in the key co-expressed module in regulation of mRNAs and revealed new candidate regulatory miRNAs and genes for the beef quality traits.

New Insights on the Impact of Cattle Handling on Post-Mortem Myofibrillar Muscle Proteome and Meat Tenderization.

This study investigated the effect of different cattle management strategies at farm (Intensive vs. Extensive) and during transport and lairage (mixing vs. non-mixing with unfamiliar animals) on the myofibrillar subproteome of Longissimus thoracis et lumborum (LTL) muscle of “Asturiana de los Valles” yearling bulls. It further aimed to study the relationships with beef quality traits including pH, color, and tenderness evaluated by Warner–Bratzler shear force (WBSF). Thus, comparative proteomics of the myofibrillar fraction along meat maturation (from 2 h to 14 days post-mortem) and different quality traits were analyzed. A total of 23 protein fragments corresponding to 21 unique proteins showed significant differences among the treatments (p < 0.05) due to any of the factors considered (Farm, Transport and Lairage, and post-mortem time ageing). The proteins belong to several biological pathways including three structural proteins (MYBPC2, TNNT3, and MYL1) and one metabolic enzyme (ALDOA) that were affected by both Farm and Transport/Lairage factors. ACTA1, LDB3, and FHL2 were affected by Farm factors, while TNNI2 and MYLPF (structural proteins), PKM (metabolic enzyme), and HSPB1 (small Heat shock protein) were affected by Transport/Lairage factors. Several correlations were found between the changing proteins (PKM, ALDOA, TNNI2, TNNT3, ACTA1, MYL1, and CRYAB) and color and tenderness beef quality traits, indicating their importance in the determination of meat quality and their possible use as putative biomarkers.

Prediction of beef quality traits through mini NIR spectrophotometer and multivariate analyses

The aim of this study was to test the ability of mini NIR reflectance spectroscopy to predict beef quality traits. Sixty M. longissimus thoracis were collected and spectra were obtained prior to beef quality trait analysis. Calibration equations were developed from reference data (n=60) of pH, color traits (lightness, redness and yellowness), drip loss (%), cooking loss (%), CP (%), EE (%), moisture (%), DM (%), and Ash (%) using partial least squares regressions. Predictive ability of the models was assessed by coefficient of determination of cross-validation (R2CV) and root mean square error of cross-validation. Predictions models were satisfactory (R2CV = 0.95) for pH, (R2CV = 0.96) for lightness (L*), (R2CV = 0.96) for redness (a*), (R2CV = 0.97) for yellowness (b*), (R2CV = 0.95) for drip loss, (R2CV = 0.95) for cooking loss, (R2CV = 0.94) for CP, (R2CV = 0.95) for EE, (R2CV = 0.91) for moisture, (R2CV = 0.91) for DM and (R2CV = 0.91) for ash. The ratio performance deviation is 5.35, 5.34, 5.87, 5.16, 4.64, 4.81, 4.45, 4.95, 3.36, 4.73 and 4.47 for L*, a*, b*, pH, drip loss, cooking loss, CP, EE, moisture, DM and Ash respectively which indicates that all values are adequate for analytical purposes. Range error ratio are 20.69, 22.97, 27.11, 18.92, 20.74, 16.20, 17.80, 17.52, 14.96, 17.89 and 17.87 for L*, a*, b*, pH, drip loss, cooking loss, CP, EE, moisture, DM and ash respectively. From the findings of this study it can be concluded that mini NIRS is a suitable tool for a rapid, non-destructive and reliable prediction of beef quality.

Comparative transcriptome analysis of winter yaks in plateau and plain.

The yak is an important source for the people living and ecological environment in the Qinghai-Tibet Plateau. In every winter, many domestic yaks will lose bodyweight or dead under cold and food scarcity. Moving the plateau yaks to farm in the plain is a useful approach to reduce their environmental stress and gain more production. In this study, we measured growth, slaughter and beef quality traits every month and sequenced mRNA expression levels of muscles of two groups yaks living in plateau and plain respectively. We found there is significant difference (p-value <0.01) in the third (60days), fourth (90days), fifth (120days) and sixth (150days) weights between subpopulations in the plateau and plain. We identified 540 different expressed genes (DEGs) including 123 known genes and 417 unknown genes. Using the weighted correlation network analysis (WGCNA) to build a co-express network, the modules were strong relative to weight traits. The findings highlighted the underlying way and a relative network to yield a new view about gene expression between the yaks living plateau and plain.

Effects of age at feedlot entry on performance, carcass characteristics, and beef quality traits of Holstein Friesian bulls reared in high altitude of Eastern Turkey

The objective of this research was to determine the effects of different initial fattening ages on the fattening performance, carcass features, and meat quality traits of Holstein Friesian bulls. A total of 24 Holstein-Friesian intact males were used in the study. The bulls were allocated to the initial fattening age groups named as Young Group (8-10 months old) (YG), Middle Aged Group (12-14 months old) (MAG) and Older Group (15-17 months old) (OG) and then placed in the feedlot based on three age groups at feedlot entry. The data that has normal distribution were analysed by using the LSMM in GLM, while others were analysed by using the nonparametric Kruskal - Wallis H test. The average daily weight gain of the YG, MAG and OG were 1.09 ± 0.27 kg, 1.01 ± 0.48 kg and 0.95 ± 0.60 kg (p < 0.01), respectively. Additionally, YG was the most effective group in terms of feed efficiency ratio (FER) compared to others. However, carcass measurements and carcass weight had lower values in the YG. Effects of age at feedlot entry had also insignificant effect on the carcass traits. Besides, measurements of the carcass muscularity including area of Musculus longissimus dorsi (MLD), SEUROP carcass conformation scores of the bulls in the MAG, and OG were superior to Holstein Friesian bulls in the YG. Different initial fattening ages had no significant effects on the chemical composition of MLD samples except for percentage of protein value. In conclusion, taking animals into feedlot at early ages resulted in accelerated weight gain, higher marbled meat, and improvement of the FER of Holstein Friesian bulls reared in harsh environmental conditions of the Eastern Turkey. However, the young animals had the lowest carcass weights and carcass measurements along with muscularity parameters.