Abstract This work solves the three-dimensional inverse boundary value problem with the quadratic Wasserstein distance (W2), which originates from the optimal transportation (OT) theory. The computation of the W2 distance on the manifold surface is boiled down to solving the generalized Monge-Ampère equation, whose solution is directly related to the gradient of the W2 distance. An efficient first-order method based on iteratively solving Poisson's equation is introduced to solve the fully nonlinear elliptic equation. Combining with the adjoint-state technique, the optimization framework based on the W2 distance is developed to solve the three-dimensional electrical impedance tomography (EIT) problem. The proposed method is especially suitable for severely ill-posed and highly nonlinear inverse problems. Numerical experiments demonstrate that our method improves the stability and outperforms the traditional regularization methods.
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