As one of the focus causes of death in the world, obesity has attracted much attention in recent years. Pancreatic lipase (PL), an outstanding target for obesity, is an enzyme which can decompose dietary lipids. Based on the good performance and drug loading effect of Mg-MOF-74, the interaction mechanism and inhibition mechanism of quercetin (Que) loaded with Mg-MOF-74 on PL were studied by multispectral technology and enzyme inhibition kinetic analysis. The effect of Mg-MOF-74 loaded Que on PL is a mix quenching process dominated by hydrophobic force. Fluorescence spectral data of the nanocomposite system were resolved by multivariate curve resolution-alternating least squares. The complex system equilibrated at a [Que]:[PL] ratio nearly 2. The conformation of PL changes under the influence of Mg-MOF-74 and Mg-MOF-74-Que were demonstrated through 3D fluorescence, Fourier transform infrared spectroscopy and circular dichroism spectrum. Molecular docking studies showed that more hydrogen bonds were formed and confirmed the stronger binding affinity of PL when Que loaded on Mg-MOF-74 (−103.17 kcal mol−1). Further analysis of the inhibition kinetics showed that PL-Que belonged to the mixed inhibition type, PL-Mg-MOF-74-Que belonged to the non-competitive inhibition type, and the inhibition constants were Ki, Que (16.63 ± 7.49 × 10−6 mol L−1) > Ki, Mg-MOF-74-Que (10.68 ± 2.04 × 10−6 mol L−1). Through investigating the inhibitory mechanism and interaction between Mg-MOF-74-Que and PL on a molecular level, it affords a new idea for the design of new PL inhibitors and a new method for the potential treatment of obesity.
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