Degradation Of Plant Litter Research Articles

Photodegradation in terrestrial ecosystems.

The first step in carbon (C) turnover, where senesced plant biomass is converted through various pathways into compounds that are released to the atmosphere or incorporated into the soil, is termed litter decomposition. This review is focused on recent advances of how solar radiation can affect this important process in terrestrial ecosystems. We explore the photochemical degradation of plant litter and its consequences for biotic decomposition and C cycling. The ubiquitous presence of lignin in plant tissues poses an important challenge for enzymatic litter decomposition due to its biological recalcitrance, creating a substantial bottleneck for decomposer organisms. The recognition that lignin is also photolabile and can be rapidly altered by natural doses of sunlight to increase access to cell wall carbohydrates and even bolster the activity of cell wall degrading enzymes highlights a novel role for lignin in modulating rates of litter decomposition. Lignin represents a key functional connector between photochemistry and biochemistry with important consequences for our understanding of how sunlight exposure may affect litter decomposition in a wide range of terrestrial ecosystems. A mechanistic understanding of how sunlight controls litter decomposition and C turnover can help inform management and other decisions related to mitigating human impact on the planet.

Comparative Genomics of Fungi in Nectriaceae Reveals Their Environmental Adaptation and Conservation Strategies.

This study presents the first genome assembly of the freshwater saprobe fungus Neonectria lugdunensis and a comprehensive phylogenomics analysis of the Nectriaceae family, examining genomic traits according to fungal lifestyles. The Nectriaceae family, one of the largest in Hypocreales, includes fungi with significant ecological roles and economic importance as plant pathogens, endophytes, and saprobes. The phylogenomics analysis identified 2684 single-copy orthologs, providing a robust evolutionary framework for the Nectriaceae family. We analyzed the genomic characteristics of 17 Nectriaceae genomes, focusing on their carbohydrate-active enzymes (CAZymes), biosynthetic gene clusters (BGCs), and adaptations to environmental temperatures. Our results highlight the adaptation mechanisms of N. lugdunensis, emphasizing its capabilities for plant litter degradation and enzyme activity in varying temperatures. The comparative genomics of different Nectriaceae lifestyles revealed significant differences in genome size, gene content, repetitive elements, and secondary metabolite production. Endophytes exhibited larger genomes, more effector proteins, and BGCs, while plant pathogens had higher thermo-adapted protein counts, suggesting greater resilience to global warming. In contrast, the freshwater saprobe shows less adaptation to warmer temperatures and is important for conservation goals. This study underscores the importance of understanding fungal genomic adaptations to predict ecosystem impacts and conservation targets in the face of climate change.

Integrating multi-platform assembly to recover MAGs from hot spring biofilms: insights into microbial diversity, biofilm formation, and carbohydrate degradation

BackgroundHot spring biofilms provide a window into the survival strategies of microbial communities in extreme environments and offer potential for biotechnological applications. This study focused on green and brown biofilms thriving on submerged plant litter within the Sungai Klah hot spring in Malaysia, characterised by temperatures of 58–74 °C. Using Illumina shotgun metagenomics and Nanopore ligation sequencing, we investigated the microbial diversity and functional potential of metagenome-assembled genomes (MAGs) with specific focus on biofilm formation, heat stress response, and carbohydrate catabolism.ResultsLeveraging the power of both Illumina short-reads and Nanopore long-reads, we employed an Illumina-Nanopore hybrid assembly approach to construct MAGs with enhanced quality. The dereplication process, facilitated by the dRep tool, validated the efficiency of the hybrid assembly, yielding MAGs that reflected the intricate microbial diversity of these extreme ecosystems. The comprehensive analysis of these MAGs uncovered intriguing insights into the survival strategies of thermophilic taxa in the hot spring biofilms. Moreover, we examined the plant litter degradation potential within the biofilms, shedding light on the participation of diverse microbial taxa in the breakdown of starch, cellulose, and hemicellulose. We highlight that Chloroflexota and Armatimonadota MAGs exhibited a wide array of glycosyl hydrolases targeting various carbohydrate substrates, underscoring their metabolic versatility in utilisation of carbohydrates at elevated temperatures.ConclusionsThis study advances understanding of microbial ecology on plant litter under elevated temperature by revealing the functional adaptation of MAGs from hot spring biofilms. In addition, our findings highlight potential for biotechnology application through identification of thermophilic lignocellulose-degrading enzymes. By demonstrating the efficiency of hybrid assembly utilising Illumina-Nanopore reads, we highlight the value of combining multiple sequencing methods for a more thorough exploration of complex microbial communities.

Dose-responses for solar radiation exposure reveal high sensitivity of microbial decomposition to changes in plant litter quality that occur during photodegradation.

Plant litter decomposition is a key process for carbon (C) turnover in terrestrial ecosystems. Sunlight has been shown to cause and accelerate C release in semiarid ecosystems, yet the dose-response relationships for these effects have not been evaluated. We conducted a two-phase experiment where plant litter of three species was subjected to a broad range of cumulative solar radiation (CSR) exposures under field conditions. We then evaluated the relationships between CSR exposure and abiotic mass loss, litter quality and the subsequent biotic decomposition and microbial activity in litter. Dose-response relationships demonstrated that CSR exposure was modestly correlated with abiotic mass loss but highly significantly correlated with lignin degradation, saccharification, microbial activity and biotic decay of plant litter across all species. Moreover, a comparison of these dose-response relationships suggested that small reductions in litter lignin due to exposure to sunlight may have large consequences for biotic decay. These results provide strong support for a model that postulates a critical role for lignin photodegradation in the mechanism of photofacilitation and demonstrate that, under natural field conditions, biotic degradation of plant litter is linearly related with the dose of solar radiation received by the material before coming into contact with decomposer microorganisms.

Phylogenetic and Functional Diversity of Saprolegniales and Fungi Isolated from Temperate Lakes in Northeast Germany.

The contribution of fungi to the degradation of plant litter and transformation of dissolved organic matter (humic substances, in particular) in freshwater ecosystems has received increasing attention recently. However, the role of Saprolegniales as one of the most common eukaryotic organisms is rarely studied. In this study, we isolated and phylogenetically placed 51 fungal and 62 Saprolegniales strains from 12 German lakes. We studied the cellulo-, lignino-, and chitinolytic activity of the strains using plate assays. Furthermore, we determined the capacity of 10 selected strains to utilize 95 different labile compounds, using Biolog FF MicroPlates™. Finally, the ability of three selected strains to utilize maltose and degrade/produce humic substances was measured. Cladosporium and Penicillium were amongst the most prevalent fungal strains, while Saprolegnia, Achlya, and Leptolegnia were the most frequent Saprolegniales strains. Although the isolated strains assigned to genera were phylogenetically similar, their enzymatic activity and physiological profiling were quite diverse. Our results indicate that Saprolegniales, in contrast to fungi, lack ligninolytic activity and are not involved in the production/transformation of humic substances. We hypothesize that Saprolegniales and fungi might have complementary roles in interacting with dissolved organic matter, which has ecological implications for carbon cycling in freshwater ecosystems.

The molecular composition of extractable soil microbial compounds and their contribution to soil organic matter vary with soil depth and tree species

Recent findings on soil organic matter (SOM) revealed that soil microorganisms are not only crucial for SOM formation through plant litter degradation but soil microbial biomass (SMB) may also directly contribute to SOM and its composition. However, the role and interactions of litter quality, microbial turnover and composition of SMB and SOM remain unclear. Hence, soil profiles (organic forest floor and mineral soil layers) at a recultivated and afforested post-mining site were investigated for the influence of litter quality from different tree species (Fagus sylvatica, Pseudotsuga menziesii, Pinus nigra) and soil depth – representing different degrees of organic matter (OM) turnover – on the molecular composition of chloroform fumigation extracted SMB-derived compounds in comparison with easily extractable (non-fumigated) SOM-derived compounds. The SMB extracts were analyzed for microbial biomass carbon (MBC), nitrogen (MBN) and phosphorus (MBP). The molecular composition of SMB and SOM compounds were determined by electrospray ionization Fourier transformation ion cyclotron resonance mass spectrometry (ESI-FT-ICR-MS) complemented by the determination of nine monosaccharides representing microbial or plant origin.Van Krevelen diagrams obtained from the ESI-FT-ICR mass spectra revealed the substantial contribution of microbial-derived compounds to extractable SOM that further increased with soil depth. Analysis of the easily extractable monosaccharides implied that >99% were of microbial origin. Microbial sugars as well as MBC, MBN and MBP explained best depth-related variations of extractable SMB compounds indicating that supply and availability of C-rich OM drive these parameters. Furthermore, the contribution of microbial sugar C to MBC increased with depth, suggesting that recycling of carbohydrates is an adaptation strategy of microorganisms in C-limited environments. The supply of tree species-specific substrates resulted in different chemical composition of SMB with largest differences between deciduous and coniferous stands and vice versa, microorganisms contributed to SOM resulting in large similarity in the composition of extractable SOM and SMB.

Vegetation vs. Anoxic Controls on Degradation of Plant Litter in a Restored Wetland

The ability of wetlands to accrete organic matter in response to rising sea-level is a key to landscape resilience, especially in light of reduced sediment availability consequent to dam construction and channelization. This study examined degradation of cattail (Typha spp) and tule (Schoenoplectus acutus) litters in restored wetlands through the lens of lignin, a major structural biopolymer in vascular plants with degradation characteristics very sensitive to oxic vs. anoxic conditions. A series of litterbags were deployed during the first 10 years after flooding of Deep (55 cm) and Shallow (25 cm) restored wetlands. As emergent marsh vegetation spread through the maturing wetlands, anoxic conditions were more prevalent and overall degradation rates of litter in litterbags were lower. In later experiments in the maturing wetlands, lignin was progressively enriched in litter as evidenced by carbon-normalized yields (8) that increased in tule starting materials from 6.3 to 7.1 mg 100mgOC-1 to as high as 9.9 mg 100mgOC-1, and in cattail starting materials from 5.9 to 7.0 mg 100mgOC-1 to as high as 10.9 mg 100mgOC-1. However, in an experiment initiated soon after the restored wetlands were constructed, 8 in tule litter decreased from 6.8 to 3.6 mg 100mgOC-1, highlighting the prevalence of initial oxic conditions. With the exception of the early oxic conditions for tule there was an overall trend of decreasing lignin acid-to-aldehyde ratios with litter degradation, which runs counter to most studies in the literature. We hypothesize that this reflects the utilization of more oxygen-rich lignin components as electron acceptors in redox reactions. No consistent differences were observed in degradation patterns between the Shallow and Deep wetlands. There were distinct differences in lignin degradation in cattail (more resistant) vs. tule (less resistant), which indicates that although anoxia may be the dominant control on organic matter accretion in wetlands, specific types of vegetation in restored or constructed wetlands affects organic matter preservation, and hence accretion. Thus, selective management of predominant species in wetlands may prove important for the ability of wetlands to maintain emergent vegetation during sea-level rise and to preserve the overall stability of wetland soils.

Contrasting Effects of Sediment Microbial Fuel Cells (SMFCs) on the Degradation of Macrophyte Litter in Sediments from Different Areas of a Shallow Eutrophic Lake

Eutrophication is one of the major ecological problems of our era. It accelerates the growth of aquatic plant and algae, eventually leading to ecological deterioration. Based on a 700-day lab experiment, this paper investigated the contrasting effects of sediment microbial fuel cells (SMFCs) on the removal of macrophyte litter in a macrophyte-dominated area and an algae-dominated area from two bay areas of a shallow eutrophic lake. The results revealed that the removal efficiencies of total organic carbon increased by 14.4% in the macrophyte-dominated area and 7.8% in the algae-dominated area. Moreover, it was found that sediment samples from the macrophyte-dominated area became more humified and had a higher electricity generation compared to the sediment samples from the algae-dominated area. Pyrosequencing analysis further determined that SMFC promoted more aromatic compound-degrading bacteria growth in sediments from the macrophyte-dominated area than from the algae-dominated area. Our study demonstrated that SMFC could enhance organic matter degradation, especially plant litter degradation, but this influence showed different from sediment sources. Thus, SMFC is capable of providing a useful strategy for delaying the terrestrialization of lakes areas suffering from eutrophication.

The influence of organic complexation on Ni isotopic fractionation and Ni recycling in the upper soil layers

Abstract The quantification of Ni isotopic fractionation induced by Ni binding to organic acids is a preliminary step to better constrain the mechanisms determining Ni isotopic fingerprint observed in surface soils, waters and plants, as well as the contribution of metal recycling during plant litter degradation. In this study, Ni isotopic fraction induced by reaction with small organic acids, e.g. citric and oxalic acids, and with soil purified humic acids (PHA) was investigated at different Ni-L ratio and pH conditions. The Donnan Membrane Technique was used to separate Ni bound to organic ligands from the free metal. Obtained results highlighted that Ni binding with carboxylic groups produces, in the adopted experimental conditions, a Δ60Nibond-free

Permafrost coverage, watershed area and season control of dissolved carbon and major elements in western Siberian rivers

Abstract. Analysis of organic and inorganic carbon (DOC and DIC, respectively), pH, Na, K, Ca, Mg, Cl, SO4 and Si in ~ 100 large and small rivers (< 10 to ≤ 150 000 km2) of western Siberia sampled in winter, spring, and summer over a more than 1500 km latitudinal gradient allowed establishing main environmental factors controlling the transport of river dissolved components in this environmentally important region, comprising continuous, discontinuous, sporadic and permafrost-free zones. There was a significant latitudinal trend consisting in a general decrease in DOC, DIC, SO4, and major cation (Ca, Mg, Na, K) concentration northward, reflecting the interplay between groundwater feeding (detectable mostly in the permafrost-free zone, south of 60° N) and surface flux (in the permafrost-bearing zone). The northward decrease in concentration of inorganic components was strongly pronounced both in winter and spring, whereas for DOC, the trend of concentration decrease with latitude was absent in winter, and less pronounced in spring flood than in summer baseflow. The most significant decrease in K concentration from the southern (< 59° N) to the northern (61–67° N) watersheds occurs in spring, during intense plant litter leaching. The latitudinal trends persisted for all river watershed size, from < 100 to > 10 000 km2. Environmental factors are ranked by their increasing effect on DOC, DIC, δ13CDIC, and major elements in western Siberian rivers as follows: watershed area < season < latitude. Because the degree of the groundwater feeding is different between large and small rivers, we hypothesize that, in addition to groundwater feeding of the river, there was a significant role of surface and shallow subsurface flow linked to plant litter degradation and peat leaching. We suggest that plant-litter- and topsoil-derived DOC adsorbs on clay mineral horizons in the southern, permafrost-free and discontinuous/sporadic permafrost zone but lacks the interaction with minerals in the continuous permafrost zone. It can be anticipated that, under climate warming in western Siberia, the maximal change will occur in small (< 1000 km2 watershed) rivers DOC, DIC and ionic composition and this change will be mostly pronounced in summer.

Stable hydrogen and carbon isotope ratios of methoxyl groups during plant litter degradation

Stable hydrogen and carbon isotope ratios of methoxyl groups (δ2Hmethoxyl and δ13Cmethoxyl values, respectively) in plant material have been shown to possess characteristic signatures. These isotopic signatures can be used for a variety of applications such as constraining the geographical origin and authenticity of biomaterials. Recently, it has also been suggested that δ2Hmethoxyl values of sedimentary organic matter of geological archives might serve as a palaeoclimate/-hydrology proxy. However, deposited organic matter is subject to both biotic and abiotic degradation processes, and therefore an evaluation of their potential impact on the δ2Hmethoxyl and δ13Cmethoxyl values would allow more reliable interpretations of both isotopic signatures. Here, we investigated this potential influence by exposing foliar litter of five different tree species (Sycamore maple, Mountain ash, European beech, Norway spruce and Scots pine) to natural degradation. The foliar litter was sampled at nine intervals over a 27-month period, and the bulk methoxyl content as well as the δ2Hmethoxyl and δ13Cmethoxyl values were measured. At the end of the experiment, a loss of the bulk methoxyl in the range of ∼40–70 % was measured. Linear regression analysis showed no dependence of δ2Hmethoxyl values with methoxyl content for four out of five foliar litter samples studied (R2 in the range of 0.03 and 0.36, p > .05). On the contrary, the δ13Cmethoxyl values showed significant linear correlations for the great majority of the foliar litter samples (R2 in the range of 0.51 and 0.73, p < .05). The litter species with the greatest methoxyl loss (Mountain ash, Scots pine and Norway spruce) showed the strongest 13C enrichment, by up to ∼5 ‰. Since δ2Hmethoxyl shows no systematic overall change during the course of degradation, we propose that there is considerable potential for its use as a palaeoclimate proxy for a wide range of geological archives containing, for instance, fossil wood or sedimentary organic matter. Care would need to be taken if δ13Cmethoxyl values of degraded organic matter are used for palaeoclimate/-environmental investigations.

Arbuscular mycorrhizal fungi reduce decomposition of woody plant litter while increasing soil aggregation

The decomposition of plant organic matter and the stability of soil aggregates are important components of soil carbon cycling, and the relationship between decomposition rate and arbuscular mycorrhizal fungi (AMF) has recently received considerable attention. The interaction of AMF with their associated microorganisms and the consequences for litter decomposition and soil aggregation still remain fairly unclear. In a laboratory pot experiment we simultaneously tested the single and combined effects of one AMF species (Rhizophagus irregularis) and a natural non-AMF microbial community on the decomposition of small wooden sticks and on soil aggregation. To disentangle effects of hyphae and roots we placed mesh bags as root exclusion compartments in the soil. The decomposition of the wooden sticks in this compartment was significantly reduced in the presence of AMF, but not with the non-AMF microbial community only, compared to the control, while aggregation was increased in all treatments compared to the control. We suggest that AMF directly (via localized nutrient removal or altered moisture conditions) or indirectly (by providing an alternative carbon source) inhibited the activity of decomposers, leading to different levels of plant litter degradation under our experimental settings. Reduced decomposition of woody litter in presence of AMF can be important for nutrient cycling in AMF-dominated forests and in the case of woody plants and perennials that develop lignified roots in grasslands.

Bromine enrichment in marsh sediments as a marker of environmental changes driven by Grand Solar Minima and anthropogenic activity (Caminha, NW of Portugal)

A sediment core collected in Caminha tidal marsh, NW Portugal, was used to assess bromine (Br) signal over the last ca. 1700years. The Br temporal variability reflects its close relationship with soil/sediment organic matter (OM) and also alterations in Br biogeochemical recycling in marsh environment. The highest Br enrichment in sediments was found during the Maunder Solar Minimum, a major solar event characterized by lower irradiance (TSI) and temperature, increased cloudiness and albedo. The obtained results suggest that those climate-induced changes weakened the natural mechanisms that promote Br biochemical transformations, driven by both living plants metabolism and plant litter degradation, with the ensuing generation of volatile methyl bromide (CH3Br). It seems that the prevailing climate conditions during the Maunder favoured the retention of more Br in marsh ecosystem, ultimately decreasing the biogenic Br emissions to the atmosphere. During the 20th century, the Br pattern in sediments appears to mirror likewise anthropogenic sources. The significant correlation (p<0.05) between Br/OM ratios and Pb contents in sediments after 1934 suggests a common source. This is most probably related with the rise, massive consumption and prohibition of leaded gasoline, where ethylene dibromide was added as lead scavenger to antiknock mixtures. More regionally, the concerted use of flame retardants on forest fire management, covering the 1980s through mid-1990s in the north of Portugal and Galicia, could be responsible for the observed increase of sediment Br (relatively to Pb) pool of this tidal marsh. Although man-made brominated compounds are being phased-out since the inception of the 1992 Montreal Protocol, the Caminha tidal marsh sedimentary record showed that Br levels only started to decline after 2002.

A novel source of atmospheric H&amp;lt;sub&amp;gt;2&amp;lt;/sub&amp;gt;: abiotic degradation of organic material

Abstract. Molecular hydrogen (H2) plays an important role in atmospheric chemistry by competing for reactions with the hydroxyl radical (OH·) and contributing to the production of H2O in the stratosphere, indirectly influencing stratospheric ozone concentrations. The dominant pathway for loss of H2 from the atmosphere is via microbially-mediated soil uptake, although the magnitude of this loss is still regarded as highly uncertain. Recent studies have shown that abiotic processes such as photochemically mediated degradation (photodegradation) of organic material result in direct emissions of carbon (C) and nitrogen (N)-based trace gases as well as H2. This H2 production has important implications on source-sink dynamics of H2 at the soil-atmosphere interface and thus it is important to quantify its variability over a range of plant types and materials. Here, we show laboratory observations of H2 production and its temperature dependence during abiotic degradation of four plant litter types as well as pure cellulose and high lignin content woody material. A greater amount of H2 was produced in the absence of solar radiation than from photodegradation alone, verifying that low temperature thermal degradation of plant litter is a source of H2. In addition, we measured a significant release of H2 both in the presence and absence of O2. Our results suggest that abiotic release of H2 during organic matter degradation is ubiquitous in arid ecosystems and may also occur in other terrestrial ecosystems. We propose that because these processes occur at the soil-atmosphere interface, they provide a previously unrecognized proximal source of H2 for microbial uptake and confound interpretation of direct measurements of atmospheric uptake that are important for constraining the global H2 budget.

Leaf litter age, chemical quality, and photodegradation control the fate of leachate dissolved organic matter in a dryland river

We used biodegradable dissolved organic carbon (BDOC) incubations, specific ultraviolet absorbance (SUVA254, indicator of aromatic carbon content) and laboratory experiments to determine the bioavailability and chemical composition of dissolved organic matter (DOM) leached from fresh leaves and litter aged on a seasonally dry floodplain for 2, 4, and 6 months. Our objective was to elucidate how litter age and solar radiation affect the bacterial utilization of DOM released from floodplain leaf litter when inundated. Leachate percent BDOC ranged from 22 to 47% for three different leaf species and significantly decreased (p < 0.05) with increasing litter age. However, total BDOC (mg C L−1) was unrelated to litter age. Bacterial utilization of DOM leachate collected from litter aged on the floodplain for four and six months significantly increased following 48 h of irradiation for all species but there was no difference for leachate from fresh and two month old litter. The photo-mediated increase in percent BDOC was concomitant with a decrease in aromatic carbon content, as SUVA254 values decreased on average 9 ± 6% for light exposure experiments. Our findings demonstrate that sunlight moderates the degradation of plant litter in the terrestrial environment through the photo-mediated shift in DOM composition and its bioavailability in streams.

An accounting of C‐based trace gas release during abiotic plant litter degradation

AbstractRecent studies showed that photochemical breakdown (photodegradation) of plant material accounts for a substantial portion of litter decomposition and subsequent trace gas release in ecosystems under high radiative load and low precipitation. In the absence of solar radiation, thermal degradation may also cause trace gas release at temperatures below the ignition point. These observations suggest that the abiotic processes of photodegradation and thermal degradation of plant litter may be important in understanding global trace gas budgets. In a laboratory incubation study, we performed a simultaneous carbon (C) accounting of CO2, CO, and CH4 produced as a byproduct of photodegradation and thermal degradation of six different plant litter types that varied in chemical composition. The patterns of trace gas release during photodegradation and thermal degradation differed considerably across the six plant materials, suggesting that chemical composition of litter may influence the rates of abiotic degradation. There was a strong positive correlation between the rates of trace gas release during photodegradation and temperature. A significant portion of trace gases were produced during low temperature (&lt; 100 °C) thermal degradation of litter in the absence of solar radiation, which was also positively correlated to temperature. In addition, both thermal degradation and photodegradation occurred in the absence of O2. This indicates that the mechanism formerly accepted as photo‐oxidation may only be one of several photodegradation processes. We speculate that the direct breakdown of chemical groups such as carboxyl, carbonyl, and methoxyl groups may result in CO2, CO, and CH4 release. We suggest that the combined processes of thermal and photodegradation of litter may be a previously under accounted source of C‐based trace gases from terrestrial systems.

Modelling photodegradation in the global carbon cycle

Photodegradation has been shown to play a role in plant litter degradation in some ecosystems, and therefore potentially in the global carbon cycle. To introduce photodegradation into models of carbon turnover we need an equation that relates mass loss to incident radiation. Based on experimental data from the literature we developed a linear equation for photodegradation as a function of light exposure. We also scaled up the results to global scale, based on global data on incident radiation and shading by plant cover. The results indicate that photodegradation plays a part in semi-arid environments and potentially some arctic and alpine environment. However, the percentage of global plant production decomposed by photodegradation is estimated to be less than 1% (range 0.5–1.6). Photodegradation is therefore important locally, but probably not very important for the global carbon budget.

Effects of solar ultraviolet radiation on terrestrial ecosystems. Patterns, mechanisms, and interactions with climate change

Ultraviolet radiation (UV) is a minor fraction of the solar spectrum reaching the ground surface. In this assessment we summarize the results of previous work on the effects of the UV-B component (280-315 nm) on terrestrial ecosystems, and draw attention to important knowledge gaps in our understanding of the interactive effects of UV radiation and climate change. We highlight the following points: (i) The effects of UV-B on the growth of terrestrial plants are relatively small and, because the Montreal Protocol has been successful in limiting ozone depletion, the reduction in plant growth caused by increased UV-B radiation in areas affected by ozone decline since 1980 is unlikely to have exceeded 6%. (ii) Solar UV-B radiation has large direct and indirect (plant-mediated) effects on canopy arthropods and microorganisms. Therefore, trophic interactions (herbivory, decomposition) in terrestrial ecosystems appear to be sensitive to variations in UV-B irradiance. (iii) Future variations in UV radiation resulting from changes in climate and land-use may have more important consequences on terrestrial ecosystems than the changes in UV caused by ozone depletion. This is because the resulting changes in UV radiation may affect a greater range of ecosystems, and will not be restricted solely to the UV-B component. (iv) Several ecosystem processes that are not particularly sensitive to UV-B radiation can be strongly affected by UV-A (315-400 nm) radiation. One example is the physical degradation of plant litter. Increased photodegradation (in response to reduced cloudiness or canopy cover) will lead to increased carbon release to the atmosphere via direct and indirect mechanisms.

Endophytes: a potential resource for biosynthesis, biotransformation, and biodegradation

In natural ecosystems, endophytes, which live in the inner tissues of healthy plants, exhibit complex interactions with their hosts. During a long coevolutionary process with their hosts, endophytes have developed many significant and novel characteristics. In order to maintain a stable symbiosis, endophytes secrete varieties of extracellular enzymes that contribute to colonization and growth. All these specific enzymes, under certain conditions, could be exploited. Nowadays, more and more complex chemical reactions are being replaced by moderate and pollution-free enzymatic reactions. Bacteria have been widely used in bioengineering, but endophytes, as a kind of organism, have not been fully developed. Therefore, great efforts to develop endophyte resources could bring us a variety of benefits, such as novel and effective bioactive compounds that cannot be synthesized by chemical reactions. It is noteworthy that, after long-term coexistence with hosts, endophytes can synthesize biologically active substances similar to the secondary metabolites produced by host plants. This could help us to accumulate many valuable drug compounds such as paclitaxel and camptothecin in a short time period. In addition, endophytes are widespread in plant roots; they can deeply affect soil chemical composition, micro-ecosystems, and physical structure over their life cycle. Besides that, endophytes play an important role in the degradation of plant litter and organic pollutants, which have an active effect on the improvement of soil fertility. Endophytes are a most promising microbial resource, waiting to be exploited.

Is there a possibility to correct fossil n-alkane data for postsedimentary alteration effects?

Abstract The long chain n-alkane composition of plant material can significantly differ between plant groups e.g. trees and grasses. Due to their relative recalcitrance, they have been employed in paleoecological research as molecular proxies for different types of vegetation. Most of those paleoenvironmental studies rely on the assumption that characteristic molecular fingerprints of plant material are preserved in the fossil organic material without significant alteration. However, there exists evidence that n-alkane distributions may change in the course of plant litter degradation. Here, the authors propose and discuss a conceptual approach to the correction of n-alkane patterns in paleosols and terrestrial sediments for postsedimentary alteration effects. This might have potential to improve paleoenvironmental reconstructions derived from these molecular fossils. In soil depth profiles typically a correlation between the OEP (odd over even predominance) and paleoecological valuable long-chain n-alkane ratios (LARs) can be found. Similar relationships have been also obtained from n-alkane records in paleosols. With the OEP serving as a proxy of microbial reworking, the correction procedure applies OEP vs. LAR regression functions to correct fossil LARs for degradation effects. The regression functions have been derived from modern soils. The application of the procedure and its significance for paleoecological interpretations is demonstrated on a case study of a loess-paleosol sequence (∼400–700 ka) in Romania. It is shown that changes in the C27/C31 n-alkane ratio at this site are closely related to degradation effects rather than to changes in the paleovegetation (e.g. tree vs. grass abundance). However, it was found that the C29/C31 ratio is a more suitable paleoenvironmental proxy at the Mircea Voda site. The results indicate that there is a future potential to correct fossil n-alkane ratios via the OEP/LAR relationship, however at the moment a general straight forward application of this approach might be critical due to lack of extended and diverse n-alkane records from modern soils. The need of more systematic n-alkane studies on soil profiles is highlighted to improve knowledge concerning dynamics and actual mechanisms of postsedimentary LAR and OEP changes.