Phenalenyl Research Articles

Cross-Coupling Between Aryl Halides and Aryl Alkynes Catalyzed by an Odd Alternant Hydrocarbon.

Catalytic cross-coupling between aryl halides and alkynes is considered an extremely important organic transformation (popularly known as the Sonogashira coupling) and it requires a transition metal-based catalyst. Accomplishing such transformation without any transition metal-based catalyst in the absence of any external stimuli such as heat, photoexcitation or cathodic current is highly challenging. This work reports transition-metal-free cross-coupling between aryl halides and alkynes synthesizing a rich library of internal alkynes without any external stimuli. A chemically double-reduced phenalenyl (PLY)-based molecule with the super-reducing property was employed for single electron transfer to activate aryl halides generating reactive aryl radicals, which subsequently react with alkyne. This protocol covers not only various types of aryl, heteroaryl and polyaryl halides but also applies to a large variety of aromatic alkynes at room temperature. With a versatile substrate scope successfully tested on more than 75 entries, this radical-mediated pathway has been explained by several control experiments. All the key reactive intermediates have been characterized with spectroscopic evidence. Detailed DFT calculations have been instrumental in portraying the mechanistic pathway. Furthermore, we have successfully extended this transition-metal-free catalytic strategy for the first time towards solvent-free cross-coupling between solid aryl halide and alkyne substrates.

Interface-Assisted Room-Temperature Magnetoresistance in Cu-Phenalenyl-Based Magnetic Tunnel Junctions

Delocalized carbon-based radical species with unpaired spin, such as the phenalenyl (PLY) radical, have opened avenues for developing multifunctional organic spintronic devices. Using direct laser writing and in situ deposition, we successfully fabricated Cu-PLY- and Zn-PLY-based organic magnetic tunnel junctions (OMTJs) with improved morphology and a reduced junction area of 3 × 8 μm2. The nonlinear and weakly temperature-dependent current–voltage (I–V) characteristics in combination with the low organic barrier height suggest tunneling as the dominant transport mechanism in the structurally and dimensionally optimized OMTJs. Cu-PLY-based OMTJs show significant magnetoresistance up to 14% at room temperature due to the formation of hybrid states at the metal–molecule interfaces called “spinterface”, which reveals the importance of spin-dependent interfacial modification in OMTJs’ design. Additionally, at high bias, in the absence of a magnetic field, OMTJ shows stable voltage-driven resistive switching. Cu-PLY having spin 1/2 with net magnetic moment demonstrates magnetic hardening between the surface molecule at the Co interface and gives rise to stable MR, which suggests its use as a feasible and scalable platform for building molecular-scale quantum memristors and processors.

A closed-shell phenalenyl-based dinuclear iron(III) complex as a robust cathode for a one-compartment H2O2 fuel cell.

Closed-shell phenalenyl (PLY) systems are increasingly becoming more attractive as building blocks for developing promising catalysts and electroactive cathode materials, as they have tremendous potential to accept electrons and participate in redox reactions. Herein, we report a PLY-based dinuclear [FeIII2(hmbh-PLY)3] complex, 1, and its utility as a cathode material in a H2O2 fuel cell. Complex 1 was synthesized from a new Schiff base ligand, (E)-9-(2-(2-hydroxy-3-methoxybenzylidene)hydrazineyl)-1H-phenalen-1-one, hmbh-PLYH2, designed using a PLY precursor, Hz-PLY. The newly derived ligand and complex 1 were characterized by various analytical techniques, including single-crystal X-ray diffraction (SCXRD). The cyclic voltammetry (CV) study revealed that complex 1 undergoes five electron reductions under an applied electric potential. When the electroactive complex 1 was employed as a cathode in a membrane-less one-compartment H2O2 fuel cell, with Ni foam as the corresponding anode, the designed fuel cell exhibited an exceptionally high peak power density (PPD) of 2.41 mW cm-2, in comparison with those of all the previously reported Fe-based molecular complexes. DFT studies were performed to gain reasonable insights into the two-electron catalytic reduction (pathway I) of H2O2 by the Fe-center of complex 1 and to explore the geometries, energetics of the electrocatalyst, reactive intermediates and transition states.

Metal-Ligand Cooperativity in MnI -Catalysed N-Formylation of Secondary Amides and Lactams Using CO2 at Room Temperature.

A MnI catalyst featuring redox-active tridentate phenalenyl (PLY) ligand has been used for catalytic N-formylation of secondary amides and lactams under 1 atm CO2 as a C1 source at room temperature for the first time. The protocol is applicable to a wide range of secondary amides including heterocycles, bio-active cinnamide derivatives and the diversification of therapeutic molecules. In-depth mechanistic investigations based on experimental outcomes and DFT calculations suggested an unconventional metal-ligand cooperation, where a ligand-centred radical plays a crucial role in initiating the reaction process.

Reduced-Phenalenyl-Based Molecule as a Super Electron Donor for Radical-Mediated C-N Coupling Catalysis at Room Temperature.

We demonstrate that an in situ generated di-reduced phenalenyl (PLY) species accumulates sufficiently high energy and acts as a super electron donor to generate aryl radicals from aryl halides to accomplish Buchwald-Hartwig-type C-N cross-coupling reactions at room temperature. This catalytic protocol does not require any external stimuli such as heat, light, or cathodic current. This protocol shows a wide variety of substrate scope covering different genres of aryl and heteroaryl halides with various aromatic as well as aliphatic amines and late-stage functionalization of the well-known natural products. The control experiments, along with extensive density functional theory (DFT) calculations, unveil that the aryl radical is generated by a single electron transfer from the di-reduced PLY to the aryl halide substrate. The aryl radical acts as an electrophile and binds with amine, leading to the chemically driven radical-mediated C-N cross-coupling under transition-metal-free conditions.

Anticancer, Antibacterial, Antioxidant, and DNA-Binding Study of Metal-Phenalenyl Complexes.

Phenalenyl (PLY)-based metal complexes are a new addition to the metal complex family. Various applications of metal-based phenalenyl complexes (metal-PLY) have been reported, such as catalyst, quantum spin simulators, spin electronic devices, and molecular conductors, but the biological significance of metal-PLY (metal = Co(II), Mn(III), Ni(II), Fe(III), and Al(III)) systems has yet to be explored. In this study, the anticancer properties of such complexes were investigated in ovarian cancer cells (SKOV3 and HEY A8), and the cytotoxicity was comparable to that of other platinum-based drugs. Antibacterial activity of the metal-PLY complexes against both gram-negative (E. coli) and gram-positive (S. aureus) bacteria was studied using a disk diffusion test and minimum inhibitory concentration (MIC) methods. All five metal-PLY complexes showed significant antibacterial activity against both bacterial strains. The antioxidant properties of metal-PLY complexes were evaluated following the 2,2-diphenyl-1-picrylhydrazyl (DPPH) scavenging method and were acceptable. The DNA-binding properties of these metal-PLY complexes were investigated using absorption spectroscopy, fluorescence spectroscopy, viscosity measurements, and thermal denaturation methods. Experimental evidence revealed that the complexes bind to DNA through intercalation, and the molecular docking study supported this conclusion.

Constructing Stable π-Dimers: Two Parallel Pancake π-π Bonds.

Stable phenalenyl (PLY) radical π-dimers still play an important role for new multifunctional materials owing to their intriguing molecular structure and unusual pancake π-π bonding mode. Herein, we design a new biphenalenyl biradicaloid (1) consisting of two PLYs and one benzene ring linkage tethered by single bonds, which presents an open-shell character. Further, three π-dimers (a1, b1, and c1) combined with 1 and conventional biphenalenyl biradicaloid (a, b, and c), which are capable of forming two staggered PLY dimers, exhibiting a short interlayer distance between the monomers. Interestingly, the analysis of the frontier molecular orbital reveals that two bonding orbitals, namely, the two highest occupied molecular orbitals (HOMO and HOMO-1) are doubly occupied. The results reveal that three π-dimers display two parallel pancake bonds. Moreover, they have small diradical and tetraradical characters, large interaction energies, and strong aromaticity, which indicate the stability of these π-dimers. The present work creates a new class of strong pancake bonding and might be utilized in devising an array of materials.

Accessing Heterobiaryls through Transition-Metal-Free C-H Functionalization.

Herein we report a transition-metal-free synthetic protocol for heterobiaryls, one of the most important pharmacophores in the modern drug industry, employing a new multidonor phenalenyl (PLY)-based ligand. The current procedure offers a wide substrate scope (24 examples) with a low catalyst loading resulting in an excellent product yield (up to 95%). The reaction mechanism involves a single electron transfer (SET) from a phenalenyl-based radical to generate a reactive heteroaryl radical. To establish the mechanism, we have isolated the catalytically active SET initiator, characterizing by a magnetic study.

Tuning the redox non-innocence of a phenalenyl ligand toward efficient nickel-assisted catalytic hydrosilylation.

In this report, a ligand-redox assisted catalytic hydrosilylation has been investigated. A phenalenyl ligand coordinated nickel complex has been utilized as an electron reservoir to develop a base metal-assisted catalyst, which very efficiently hydrosilylates a wide variety of olefin substrates under ambient conditions. A mechanistic investigation revealed that a two-electron reduced phenalenyl based biradical nickel complex plays the key role in such catalysis. The electronic structure of the catalytically active biradical species has been interrogated using EPR spectroscopy, magnetic susceptibility measurements, and electronic structure calculations using a DFT method. Inhibition of the reaction by a radical quencher, as well as the mass spectrometric detection of two intermediates along the catalytic loop, suggest that a single electron transfer from the ligand backbone initiates the catalysis. The strategy of utilising the redox reservoir property of the ligand ensures that the nickel is not promoted to an unfavorable oxidation state, and the fine tuning between the ligand and metal redox orbitals elicits smooth catalysis.

Exploring Closed-Shell Cationic Phenalenyl: From Catalysis to Spin Electronics.

The odd alternant hydrocarbon phenalenyl (PLY) can exist in three different forms, a closed-shell cation, an open-shell radical, and a closed-shell anion, using its nonbonding molecular orbital (NBMO). The chemistry of PLY-based molecules began more than five decades ago, and so far, the progress has mainly involved the open-shell neutral radical state. Over the last two decades, we have witnessed the evolution of a range of PLY-based radicals generating an array of multifunctional materials. However, it has been admitted that the practical applications of PLY radicals are greatly challenged by the low stability of the open-shell (radical) state. Recently, we took a different route to establish the utility of these PLY molecules using the closed-shell cationic state. In such a design, the closed-shell unit of PLY can readily accept free electrons, stabilizing in its NBMO upon generation of the open-shell state of the molecule. Thus, one can synthetically avoid the unstable open-shell state but still take advantage of this state by in situ generating the radical through external electron transfer or spin injection into the empty NBMO. It is worth noting that such approaches using closed-shell phenalenyl have been missing in the literature. This Account focuses on our recent developments using the closed-shell cationic state of the PLY molecule and its application in broad multidisciplinary areas spanning from catalysis to spin electronics. We describe how this concept has been utilized to develop a variety of homogeneous catalysts. For example, this concept was used in designing an iron(III) PLY-based electrocatalyst for a single-compartment H2O2 fuel cell, which delivered the best electrocatalytic activity among previously reported iron complexes, organometallic catalysts for various homogeneous organic transformations (hydroamination and polymerization), an organic Lewis acid catalyst for the ring opening of epoxides, and transition-metal-free C-H functionalization catalysts. Moreover, this concept of using the empty NBMO present in the closed-shell cationic state of the PLY moiety to capture electron(s) was further extended to an entirely different area of spin electronics to design a PLY-based spin-memory device, which worked by a spin-filtration mechanism using an organozinc compound based on a PLY backbone deposited over a ferromagnetic substrate. In this Account, we summarize our recent efforts to understand how this unexplored closed-shell state of the phenalenyl molecule, which has been known for over five decades, can be utilized in devising an array of materials that not only are important from an organometallic chemistry or organic chemistry point of view but also provide new understanding for device physics.

Boron/nitrogen substituted the staggered hetero-dimers: Fascinating intermolecular charge-transfer and large NLO responses

Recently, the structure-property relationships of an attractive isomeric radical 1 (Phys. Chem. Chem. Phys., 2016, 18, 29041–29044) with famous phenalenyl (PLY) was investigated. Can PLY and 1 form stable π-dimers? The single point energy scan result shows that the staggered π-dimer (2) has the lowest energy. In order to explore intermolecular charge-transfer and nonlinear optical property, two π-dimers (2a and 2b by boron and nitrogen atoms substituting the central carbon atoms of 2) are designed. 2 has smaller intermolecular charge-transfer (0.020) and the first hyperpolarizability (βtot, 3.18 × 102 au). However, boron and nitrogen substitution effect can greatly enhance intermolecular charge-transfer (0.215 for 2a and 0.181 for 2b) and the βtot values (6.32 × 103 for 2a and 6.80 × 103 for 2b). Interestingly, the βtot values of 2a and 2b are close to each other, but their βz components and the NBO charge analysis show that 2a and 2b have opposite direction of charge transfer, which can be well explained by the difference of the dipole moment component (Δμz) between the ground and the excited states. Further, the first hyperpolarizability density study clearly substantiates the difference in their βzzz values: negative contribution for 2a is much larger than positive contribution, while the first hyperpolarizability density for 2b shows much larger positive contribution. Thus, the primary component of βzzz is negative value for 2a and βzzz is positive value for 2b. Combining with the frontier molecular orbital (FMO) and the electron density difference map (EDDM), intermolecular charge-transfer transition from B substituted fragment to N substituted fragment for 2a and 2b is concluded. The significant structure-property relationships in present π-dimers are beneficial for further theoretical and experimental investigations of high-performance nonlinear optical materials.

Aromatic changes in isoelectronic derivatives of phenalenyl radicals by central carbon replacement

A computational study of the aromatic characteristics of phenalenyl (PLY) upon replacement of the central carbon atom by Si, Ge, N, P, As, B, Al and Ga atoms comprising isoelectronic series with different charges (0, +1, −1) has been performed at the B3LYP/6-311++G(d,p) level. Two different geometries have been obtained, one planar and another one bowl-shaped. PLY derivatives exhibit a loss of the aromatic character in all cases indicated by NICS (Nucleus-Independent Chemical Shifts) values. These aromatic features are also in agreement with the pyramidalisation undergone by the central atom. The current density maps for those planar systems corroborate NICS findings. These variations in the aromaticity have been rationalised in terms of charge localisation. Harmonic oscillator model of aromaticity (HOMA) and para-delocalisation indices (PDI) have been used to evaluate the electron density delocalisation. HOMA values do not correlate with NICS but PDI indices follow the same trend than NICS.

Two-electron/24-center (2e/24c) bonding in novel diradical π-dimers.

A series of diradical π-dimers 2 with interesting pancake-shaped 2e/24c π-π bonding character were designed and investigated based on the famous phenalenyl (PLY) π-dimer with 2e/12c π-π bonding character. The position of stronger interaction between two layers of radicals was found by the Wiberg bond index (WBI) maximum component. Further, the different contributions of the interaction energy were analyzed quantitatively by energy decomposition analysis (EDA). Among these new diradical π-dimers, 2180 has the smallest layer distance and the largest interaction between two layers of radicals. The unusual PLY analogues can provide new insights into the unique features of two-electron/multicenter (2e/mc) π-π bonding.

Unravelling the Key Driving Forces of the Spin Transition in π-Dimers of Spiro-biphenalenyl-Based Radicals.

Spiro-biphenalenyl (SBP) boron radicals constitute an important family of molecules for the preparation of functional organic materials. The building blocks of several SBP-based crystals are π-dimers of these radicals, in which two phenalenyl (PLY) rings face each other and the other two PLYs point away from the superimposed PLYs. The dimers of ethyl-SBP and butyl-SBP undergo a spin transition between a diamagnetic and a paramagnetic state upon heating, while other dimers exhibit paramagnetism at all temperatures. Here, we present a computational study aimed at establishing the driving forces of the spin-transition undergone by ethyl-SBP at ∼140 K. The ground state of the π-dimers below 140 K is a singlet state in which the SBP unpaired electrons are partially localized in the superimposed PLYs. Above 140 K, the unpaired electrons are localized in the nonsuperimposed PLYs. These high-temperature structures are exclusively governed by the ground triplet state because the open-shell singlet with the unpaired electrons localized in the nonsuperimposed PLYs does not feature any minimum in the potential energy surface of the system. Furthermore, we show that the electrostatic component of the interaction energy between SBP radicals in the π-dimers is more attractive in the triplet than in the singlet, thereby partially counteracting the bonding and dispersion components, which favor the singlet. This electrostatic stabilization of the triplet state is a key driving force of the spin transition of ethyl-SBP and a key factor explaining the paramagnetic response of the π-dimers of other SBP-based crystals.

Phenalenyl in a Different Role: Catalytic Activation through the Nonbonding Molecular Orbital

We have demonstrated that the nonbonding molecular orbital (NBMO) of the phenalenyl (PLY) cation can be used as a Lewis acid catalyst for different organic transformations. Detailed computational and spectroscopic studies for the aminolysis reaction of epoxide reveal that this catalysis works through a different mechanism, and the phenalenyl cation activates the amine moiety using its empty NBMO, which triggers the epoxide ring-opening reaction. It has been shown that the energy of the NBMO of PLY cation plays a key role in modulating the catalytic activity. This study establishes that the cationic state of phenalenyl unit is useful not only for construction of the spin memory device by external spin injection using its NBMO, but in addition, the same NBMO can act as an organic Lewis acceptor unit to influence the catalytic outcome of a homogeneous reaction.

Organozinc Catalyst on a Phenalenyl Scaffold for Intramolecular Hydroamination of Aminoalkenes

The syntheses and characterization of two organozinc compounds were accomplished by reacting phenalenyl (PLY)-based ligands with ZnMe2. Reactions of [HN(Cy),O-PLY] and [HN(Cy),N(Cy)-PLY] ligands with ZnMe2 led to the formation of the dimeric orange-colored organozinc compound [N(Cy),O-PLY-ZnMe]2 (1) and red-colored monomeric organozinc compound [N(Cy),N(Cy)-PLY-ZnMe] (2) under evolution of methane. Both 1 and 2 were characterized by NMR spectroscopy, elemental analysis, and single-crystal X-ray diffraction study. The organozinc compound 2 was tested as a catalyst for intramolecular hydroamination of both unactivated primary and secondary aminoalkenes in the presence of an externally added activator, which generated the zinc-based cation in situ. The catalytic result obtained from the present catalyst 2 was compared with the catalysts having similar structure from previous studies. The DFT calculation indicates that the stability of the in situ generated cation plays a significant role in the catalytic activity in the hydroamination reaction.

Synthesis of Tetrachalcogenide-Substituted Phenalenyl Derivatives: Preparation and Solid-State Characterization of Bis(3,4,6,7-tetrathioalkyl-phenalenyl)boron Radicals

We report the synthesis and properties of a series of spiro-bis(3,4,6,7-tetrachalcogenide-substituted-phenalenyl)boron salts and two of the corresponding tetrathioalkyl-substituted spiro-bis(phenalenyl)boron radicals [tetrathiomethyl (10) and tetrathioethyl (11)] in which all of the active positions of the phenalenyl (PLY) nucleus are functionalized. In the solid state, radicals 10 and 11 exist as a weak π-dimers due to the steric congestion of the thioalkyl groups in the superimposed PLY units. As a result, the spins are localized in the isolated (nonsuperimposed) PLY rings, and the structure, magnetic susceptibility measurements, and band structure calculations confirm that these PLY units are unable to undergo strong intermolecular interaction as a result of the orientation of the thioalkyl groups.

Phenalenyl‐Based Organozinc Catalysts for Intramolecular Hydroamination Reactions: A Combined Catalytic, Kinetic, and Mechanistic Investigation of the Catalytic Cycle

Herein, we report the synthesis and characterization of two organozinc complexes that contain symmetrical phenalenyl (PLY)-based N,N-ligands. The reactions of phenalenyl-based ligands with ZnMe(2) led to the formation of organozinc complexes [N(Me),N(Me)-PLY]ZnMe (1) and [N(iPr),N(iPr)-PLY]ZnMe (2) under the evolution of methane. Both complexes (1 and 2) were characterized by NMR spectroscopy and elemental analysis. The solid-state structures of complexes 1 and 2 were determined by single-crystal X-ray crystallography. Complexes 1 and 2 were used as catalysts for the intramolecular hydroamination of unactivated primary and secondary aminoalkenes. A combined approach of NMR spectroscopy and DFT calculations was utilized to obtain better insight into the mechanistic features of the zinc-catalyzed hydroamination reactions. The progress of the catalysis for primary and secondary aminoalkene substrates with catalyst 2 was investigated by detailed kinetic studies, including kinetic isotope effect measurements. These results suggested pseudo-first-order kinetics for both primary and secondary aminoalkene activation processes. Eyring and Arrhenius analyses for the cyclization of a model secondary aminoalkene substrate afforded ΔH(≠) =11.3 kcal mol(-1) , ΔS(≠) =-35.75 cal K(-1) mol(-1) , and E(a) =11.68 kcal mol(-1) . Complex 2 exhibited much-higher catalytic activity than complex 1 under identical reaction conditions. The in situ NMR experiments supported the formation of a catalytically active zinc cation and the DFT calculations showed that more active catalyst 2 generated a more stable cation. The stability of the catalytically active zinc cation was further supported by an in situ recycling procedure, thereby confirming the retention of catalytic activity of compound 2 for successive catalytic cycles. The DFT calculations showed that the preferred pathway for the zinc-catalyzed hydroamination reactions is alkene activation rather than the alternative amine-activation pathway. A detailed investigation with DFT methods emphasized that the remarkably higher catalytic efficiency of catalyst 2 originated from its superior stability and the facile formation of its cation compared to that derived from catalyst 1.

Organic radicals based on phenalenyl and verdazyl units

Stable phenalenyl (PLY) radicals without sterically bulky substituents need to be synthesized for application as neutral organic molecular conductors. Verdazyl radicals, which have high stability even without sterically bulky substituents, were combined with PLY radicals to produce two novel radicals. The stability of the dimethylthiourea substituted PLY radical is supported by the experimental results and quantum chemical calculations.

Is There a Lower Limit to the CC Bonding Distances in Neutral Radical π-Dimers? The Case of Phenalenyl Derivatives

Two-electron multicenter (2e/mc) bonding of phenalenyl (PHYL) pi-dimers was found to be significantly affected by the electron density on the bonding active sites. The computational analysis shows that, upon appropriate beta-substitutions, the newly introduced dimers have the shortest and strongest covalent bonding interactions seen in any neutral pi-dimer. The unusual strengthening of the bonding was attributed to the reduced lone pair bond weakening effect, LPBWE, upon substitutions with electron-withdrawing groups.