Phase Of Cycle Research Articles

Establishment of methanogen bacterial interactions during the preweaning period of dairy cattle

Ruminant livestock are major contributors to anthropogenic methane emissions in the United States and worldwide. Enteric methane is generated by methanogenic archaea residing in ruminant digestive tracts. Information on when methanogens colonize the gut and when they begin to interact with bacteria during the early phases of the ruminant life cycle is less explored. The objectives of this study were (i) to investigate the composition of the methanogenic archaeal community at birth and through the weaning transition and (ii) to determine if and when the methanogenic archaea begin to interact with bacteria in the lower gut of neonatal dairy calves. Ten female Holstein calves (approximately 45kg birth weight) were enrolled in the study. Fecal samples were collected every two weeks (Wk 2, 4, 6, 8, 10, and 12) between birth and weaning and analyzed for methanogenic archaeal diversity via 16S rRNA amplicon sequencing and quantitative real-time PCR (RT-qPCR). Estimates of alpha diversity (Observed species, and Shannon diversity index) and beta diversity (weighted and unweighted UniFrac distances) showed significant differences (P < 0.05) between archaeal communities across timepoints. Both 16S rRNA amplicon sequencing and RT-qPCR analyses revealed Methanobrevibacter was the most prevalent genus at Wk2, Wk4, and Wk6, whereas Methanosphaera gradually increased with time and was most abundant at Wk10 and Wk12. Correlation analysis revealed that Methanobrevibacter and Methanosphaera were inversely correlated with each other and formed distinct cohorts with specific bacterial lineages similar to those reported in the mature rumen, thus revealing that these associations are established during the preweaning period. Therefore, the preweaning period presents a window of opportunity to interfere with early-life methanogenic colonization with the ultimate goal of reducing enteric methane emissions without perturbing ruminal function later in the life of dairy cattle.

Maximising Hackathon Impact: A Comprehensive Framework for Sustaining Post-Event Outcome

Since 2020, numerous guides and tools have been available for designing, planning, and running hackathons in fields such as software engineering, ICT, and healthcare. However, a substantial gap is observed in the post-event phase of hackathons' life cycle, directly affecting the sustainability of results. This bears significant implications for hackathon events per se, as well as for ecosystem stakeholders, in medium-term and long-term perspectives. This paper addresses the issue of low valorisation of hackathon-derived solutions and assists their direct exploitation. We aim to provide a framework for hackathon organisers, managers, policymakers, and intermediary bodies maximising impact of such events. To achieve this, we investigate the relationship between event-level success and ecosystem-level impact. We draw upon the practices and data from the ENTREPRENEDU project hackathons, a Horizon Europe-funded program coordinated by the E. Amaldi Foundation. This series of hackathons, held in three different countries, helped identify key aspects for further investigation and served as the groundwork to define/frame our research question. We conducted literature review, examining papers and reports to explore how hackathon-derived knowledge is valorised within entrepreneurial and innovation ecosystems. Our research aimed to identify how the already known success factors of a well-designed event contribute to the sustainability of outcomes and assess their relationship. We link hackathon success indicators juxtaposed to relevant factors. While acknowledging the complexity and multifactorial nature of innovation process and knowledge diffusion, we believe that our study advances the potential for hackathons’ greater impact by providing a cohesive framework.

Changes in muscle cross-sectional area during two menstrual cycles may not be exclusively attributed to resistance training

This study investigated the impact of menstrual cycle (MC) phases and resistance training (RT) on muscle cross-sectional area (CSA) in two MCs utilizing a within-subject design. Twenty women with regular MCs had their legs randomly allocated to either the control (CON) or RT condition, which included 16 training sessions over two MCs. CSA, estradiol (E2), and progesterone (P4) were assessed during the menstruation (M), ovulation (O), and luteal (L) phases in the first (M1, O1, L1) and second (M2, O2, L2) MCs and at the beginning of the third MC (M3). P4 values were significantly higher during the luteal phase than during menstruation (P < 0.0001) and ovulation (P < 0.0001). No significant differences in E2 concentrations were observed between the MC phases (P = 0.08). For the RT condition, the CSA showed significant increases at O2, L2, and M3 compared to baseline (M1) (all P < 0.0001). No significant changes were observed for the CON condition during the two MCs (P > 0.05). However, RT condition showed a significant change in average CSA across two MCs. Additionally, individual analyses revealed that 19 participants showed variation in CSA above or below the minimum detectable difference during the two MCs. These findings suggest that changes in muscle CSA observed during two MCs may not be exclusively attributed to RT.

Efficacy of combined exercise training during different menstrual phases in young students with primary dysmenorrhoea

AbstractObjectivesThe objective of the study was to compare the effectiveness of combined exercise training during different menstrual phases on pain, quality of life and menstrual symptoms.MethodsA total of 72 participants for the study were randomly assigned into three groups: Group 1 (N = 24), Group 2 (N = 24) and Group 3 (N = 24) which had undergone combined exercise training during the follicular, luteal and bleeding phases of their menstrual cycle, respectively. The treatment programme included combined exercise training involving deep breathing exercises, Kegel exercises, core strengthening exercises and stretching exercises. Exercises were repeated 5 times with hold duration of 15 s with total of 30–40 min session with 5–10 min of warm‐up and cooldown sessions. Demographic data and outcome measures (Visual Analogue Scale [VAS], Menstrual Symptom Questionnaire [MSQ], and Working ability, Location, Intensity, Days, Duration [WaLIDD]) were assessed at baseline and assessed again during the first menstrual cycle after the completion of the treatment programme. One‐way ANOVA was used for between‐group comparisons of the normally distributed data.ResultsWithin‐group comparison of the outcome variables except VAS in group 3 showed a statistically significant difference in all groups. Comparison of post‐intervention results of the outcome measures of all the groups revealed a statistically significant difference for the VAS, while there was no statistically significant difference for in between the comparison of the WaLIDD and MSQ scoring.ConclusionCombined exercise training is effective in reducing pain only when performed during follicular and luteal phases and significantly improve quality of life and menstrual symptoms in all phases of the menstrual cycle.

Development of phase-cycling interface-specific two-dimensional electronic sum frequency generation (2D-ESFG) spectroscopy.

Two-dimensional electronic spectroscopy (2D-ES) has become an important technique for studying energy transfer, electronic coupling, and electronic-vibrational coherence in the past ten years. However, since 2D-ES is not interface specific, the electronic information at surfaces and interfaces could not be demonstrated clearly. Two-dimensional electronic sum-frequency generation (2D-ESFG) is an emerging spectroscopic technique that explores the correlations between different interfacial electronic transitions and is the extension of 2D-ES to surface and interfacial specificity. In this work, we present the detailed development and implementation of phase-cycling 2D-ESFG spectroscopy using an acousto-optic pulse shaper in a pump-probe geometry. With the pulse pair generated by a pulse shaper rather than optical devices based on birefringence or interference, this 2D-ESFG setup enables rapid scanning, phase cycling, and the separation of rephasing and nonrephasing signals. In addition, by collecting data in a rotating frame, we greatly improve experimental efficiency. We demonstrate the method for azo-derivative molecules at the air/water interface. This method could be readily extended to different interfaces and surfaces. The unique phase-cycling 2D-ESFG technique enables one to quantify the energy transfer, charge transfer, electronic coupling, and many other electronic properties and dynamics at surfaces and interfaces with precision and relative ease of use. Our goal in this article is to present the fine details of the fourth-order nonlinear optical technique in a manner that is comprehensive, succinct, and approachable such that other researchers can implement, improve, and adapt it to probe unique and innovative problems to advance the field.

STATE AND PROSPECTS OF THE DEVELOPMENT OF UKRAINE'S BUILDING INDUSTRY IN THE CONDITIONS OF THE ECONOMIC CRISIS CAUSED BY THE FULL-SCALE AGGRESSION OF THE RUSSIA, FROM THE POINT OF VIEW OF ECONOMIC CYCLICITY

The article is dedicated to examining the specific manifestations of economic cyclicality in Ukraine's building materials industry under martial law conditions. The analysis reveals that the full-scale war has led to the destruction of approximately 20% of enterprises, while others have experienced significant declines in production volumes, market access, raw material sources, and human resources. The features of war-induced economic crises are compared with cyclical overproduction crises, showing that military actions immediately push the economy into a recession phase. However, recovery may commence even before the end of hostilities due to the economy reaching the trough of the economic cycle.The article explores various approaches to defining and understanding the concept of "economic crisis," highlighting the importance of identifying its causes and characteristics. Key factors influencing the transition between different phases of economic cycles—recession, depression, recovery, and expansion—are identified. It is noted that the moments of phase transition are critical to economic development, as they represent the shift from quantitative changes in one phase to qualitative changes in the next.The dynamics of real estate prices are analyzed as one of the key indicators signaling the onset of the recovery phase. Additionally, the article formulates the components of a development strategy for Ukraine’s construction sector during the recovery period, taking into account the consequences of the war. These components include the localization of building materials production, improving housing comfort, ensuring the environmental sustainability of building materials, conserving resources in their production (particularly energy), involving foreign aid in the reconstruction process, and recycling demolition waste into building materials. It is determined that the future development of the construction industry must also address the issue of effectively insulating protective structures and bomb shelters with eco-friendly materials, necessitating further development of domestic building materials that meet the urgent demands of wartime. The article concludes with the prospect of utilizing hemp-lime building materials in the reconstruction process, as they fully align with the proposed development strategy

Differences in the stride time and lower limb joint angles and their variability during distance running between treadmill and over-ground: a crossover study.

Treadmills have been used in laboratories to assess various measures related to walking and running. However, there has been some skepticism regarding their reliability as a representation of outdoor running. While marathon running has gained popularity as a form of physical activity, there have been few studies examining stride-to-stride variability after distance running, especially in relation to the duration and surface of running. This study compared stride time and lower limb joint angles during distance treadmill running and running over-ground. The hypothesis was that stride-to-stride variability would be influenced by running duration and surface, with greater variability observed during outdoor running. Eleven runners participated in the study, running on a treadmill and over-ground for 31 minutes at their preferred speed. Inertial measurement units were used to measure stride time, total range of motion, and joint angles of the hip, knee, and ankle in different phases of the gait cycle in the sagittal plane movements. Mean and coefficient of variation of each parameter were compared between the initial and final 5 minutes of running on the treadmill and over-ground. There were no significant differences in stride time or its variability based on running duration or surface. However, mean and variability of certain lower limb joint angles were higher during outdoor running, supporting the hypothesis. Variability was higher in the initial duration of running as compared to final phase of running. These findings suggest that treadmill may not fully reflect the dynamics of running over-ground. It is important to consider variability in gait analysis and research, as well as the potential impact on training and clinical practice.

Tarhan method in the chemical properties and determinations of carbonatoblastites

Up to now, in geology/earth science literature, carbonatites (carbonatic rocks) have been accepted as magmatic-origin, rarely seen in nature, depth rocks (plutonic). As a result of our scientific studies (field, petrography, mineralogical etc.), it has been definitely determined that carbonatites are not magmatic-origin intrusion, carbonatic dyke, pegmatitic, stock and lens-type depth rocks. On the other hand, carbonatites develop in the regional dynamothermal Tarhan metamorphism cycle, in the second phase, under the changing physical conditions (P/T) of the Abukuma type reversed regional regressive dynamothermal metamorphism facies and sub-facies, where temperatures are effective compared to the developed pressures (T>P, temperatures have left their mark on metamorphism). The previously existing (pre-exiting) pure-impure primary source rock units, carbonate/limestones and primary source rock units develop within pure-impure marbles, which are metamorphic equivalents of Barrow type regional progressive dynamothermal metamorphism, where pressures are effective compared to temperatures in the first phase of the metamorphism cycle (P>T, pressures mark the metamorphism). They were derived from the rock units in question in solid phase and in-situ (autochthonous where they are). Therefore, carbonatites, which have been known as magmatic-originated depth rocks until today, are metamorphic-originated, rootless, metablastic rock series and derivatives, which are a type of new modern metamorphic rocks. It has been determined that they are carbonatoblastite type metablastic rocks with different primary rocks of origin (pure-impure carbonate/limestone). Up to now, carbonatites have been determined by a very expensive method according to O/C isotope ratios. However, carbonatites accepted to be of magmatic origin correspond to carbonatoblastites of metamorphic origin. Therefore, it has been suggested to apply the Tarhan Method, which is much cheaper and more practical in the determination of carbonatoblastites. According to the Tarhan method, petrographic thin sections are made from pure-impure carbonate/limestone, pure-impure limestones and pure-impure carbonatoblastites. In the polarized light microscope, optical signals/marking of single optical axis minerals (uniax minerals) of different carbonate type minerals in petrographic thin sections of different carbonate rocks are determined (quartz, calcite, calcite-dolomite, dolomite, apatite, nepheline, siderite, aragonite, witherite, stronsionite etc.). Single optical axis rock-forming main minerals of different carbonate origin and other rock-forming main single optical axis silicate minerals (quartz, orthoclase, foid, etc.) found together with the minerals in question often give a single optical axis optically positive (+) sign (ne > no). The petrographic thin section giving optically positive (+) sign shows that the rock sample belonging to it is carbonatoblastite (known as rare carbonatites of magmatic origin) type, 3rd generation metamorphic rock. If the main different carbonate minerals with rock-forming minerals and the main silicate minerals with single optical axis rock-forming minerals found together with them mostly give single optical axis optically negative (-) sign (ne < no), the mentioned petrographic thin sections indicate that they belong to limestone/carbonate which are 1st generation pure-impure primary source rocks of sedimentary origin and 2nd generation pure-impure marbles of metamorphic origin. However, the single optical negative (-) sign of different carbonate type minerals of marbles is much more effective than the optically negative (-) signs of different carbonate minerals that form limestones. As a result; Carbonatoblastic rock series and their derivatives/carbonatoblastites (known as carbonatites, which are rare depth rocks of magmatic origin) generally have a positive (+) sign (ne > no) with a single optical axis. In other words, all carbonate-based carbonatoblast and silicate-based rock-forming main-secondary-trace anhydrous, light-colored, expanding cage/structured, tectosilicate/framework crystalloblast neominerals are generally single-axis positive (+) sign. However, the carbonate-dominated rock-forming main carbonate minerals within the vertical and lateral gradual transition zones of carbonatoblastites and marbles (metamixitic metamorphic transition zone) have a single optical axis with optically negative-positive (±) and optically positive-negative (±) signs.

Endometrial Cell-Type Specific Regulation of the Endocannabinoids System and the Impact of Menstrual Cycle and Endometriosis.

Introduction: Anandamide (AEA) and 2-arachidonoylglycerol are endogenous agonists of the cannabinoid receptors and regulate and control many cellular functions. Their activities are governed by enzymes and proteins that regulate their synthesis, receptor binding, transport, and degradation, which are known as the endocannabinoid system (ECS). The aim of this study was to investigate the regulation of endocannabinoid activity in the endometrium by studying the RNA and protein expression of the ECS within endometrial cell types and during different menstrual cycle stages and the impact of endometriosis. Materials and Methods: The RNA expression of 70 ECS genes was assessed using RNA sequencing of isolated endometrial epithelial and stromal cells. Subsequent immunofluorescence-stained endometrial samples on ECS components of interest were objectively analyzed via an agnostic and automated image analysis pipeline to extract quantitative information. Differential gene and protein expression was investigated between the two cell types, menstrual cycle phases, and endometriosis cases and controls. Results: Sufficient RNA expression was detected for 45 genes, and 17 (38%) genes were significantly different between epithelial and stromal cells. FAAH RNA was significantly higher in epithelial cells compared with stromal cells. Protein expression analysis of the main synthesizing (NAPE-PLD) and catabolizing (FAAH and NAAA) enzymes of AEA revealed a significantly stronger epithelial expression compared to stromal cells. The RNA and protein expression of CB1 receptors was very low with no significant difference between epithelial and stromal cells. Eleven ECS genes were regulated across the menstrual cycle, and there was no gene with significant difference between endometriosis cases and controls in epithelial cells. Discussion: Differential expression of ECS genes supports a cell type-specific endocannabinoid activity in the endometrium. As endocannabinoids are short-lived signaling molecules, higher RNA and protein expression of FAAH in the epithelial cells suggests an active regulation of endocannabinoid activity in epithelial cells within the endometrium.

Mechanism of norcantharidin intervention in gastric cancer: analysis based on antitumor proprietary Chinese medicine database, network pharmacology, and transcriptomics

BackgroundCombining antitumor proprietary Chinese medicine (pCm) with radiotherapy and chemotherapy can effectively improve tumor cure rates and enhance patients’ quality of life. Gastric cancer (GC) severely endangers public health. Despite satisfactory therapeutic effects achieved by using antitumor pCm to treat GC, its underlying mechanism remains unclear.ObjectiveTo integrate existing research data, construct a database of antitumor pCm, and study the intervention mechanisms in GC by focusing on their monomer components.MethodsWe constructed an antitumor pCm database based on China’s medical insurance catalog, and employed network pharmacology, molecular docking methods, cell experiments, transcriptomics, and bioinformatics to investigate the intervention mechanisms of effective pCm components for GC.ResultsThe study built an antitumor pCm database including 55 pCms, 171 Chinese herbal medicines, 1955 chemical components, 2104 targets, and 32 disease information. Network pharmacology and molecular docking technology identified norcantharidin as an effective component of antitumor pCm. In vitro experiments showed that norcantharidin effectively inhibited GC cell proliferation, migration, and invasion; blocked the G2/M cell cycle phase; and induced GC cell apoptosis. Transcriptomic results revealed that norcantharidin affected biological processes, such as cell adhesion, migration, and inflammatory responses by influencing PI3K-AKT, NF-κB, JAK-STAT, TNF-α signaling pathways, and EMT-related pathways. Core molecules of norcantharidin involved in GC intervention include SERPINE1, SHOX2, SOX4, PRDM1, TGFR3, TOX, PAX9, IL2RB, LAG3, and IL15RA. Additionally, the key target SERPINE1 was identified using bioinformatics methods.ConclusionNorcantharidin, as an effective component of anti-tumor pCm, exerts its therapeutic effects on GC by influencing biological processes such as cell adhesion, migration, and inflammation. This study provides a foundation and research strategy for the post-marketing re-evaluation of antitumor pCms.

Phytochemical Characterization of Bilberries and Their Potential as a Functional Ingredient to Mitigate Ochratoxin A Toxicity in Cereal-Based Products

Mycotoxin contamination of cereals and cereal-based products is a serious problem for food safety. Antioxidant-rich ingredients such as bilberries (Vaccinium myrtillus L., VM) may mitigate their harmful effects. Firstly, total phenolic content, antioxidant activity, and analytical phytochemical composition (hydroxycinnamic and hydroxybenzoic acids, flavanols, flavonols, and anthocyanins) were assessed in lyophilized wild bilberries from Romania. Secondly, this study evaluated bilberries’ effects on reducing ochratoxin A (OTA) bioaccessibility and cytotoxicity. An in vitro digestion model was developed and applied to four different types of bread: Control, VM (2%), OTA (15.89 ± 0.13 mg/kg), and OTA (16.79 ± 0.55 mg/kg)-VM (2%). The results indicated that VM decreased OTA bioaccessibility by 15% at the intestinal level. OTA-VM digests showed improved Caco-2 cell viability in comparison to OTA digests across different exposure times. Regarding the alterations in Jurkat cell line cell cycle phases and apoptosis/necrosis, significant increases in cell death were observed using OTA digests (11%), while VM addition demonstrated a protective effect (1%). Reactive oxygen species (ROS) analysis confirmed these findings, with OTA-VM digests showing significantly lower ROS levels compared to OTA digests, resulting in a 3.7-fold decrease. Thus, bilberries exhibit high potential as a functional ingredient, demonstrating protection in OTA mitigation effects.

Exploring ambulance clinicians’ clinical reasoning when training mass casualty incidents using virtual reality: a qualitative study

BackgroundHow ambulance clinicians (ACs) handle a mass casualty incident (MCI) is essential for the suffered, but the training and learning for the ACs are sparse and they don’t have the possibility to learn without realistic simulation training. In addition, it is unclear what type of dilemmas ACs process in their clinical reasoning during an MCI. With virtual reality (VR) simulation, the ACs clinical reasoning can be explored in a systematic way. Therefore, the objective was to explore ambulance clinicians’ clinical reasoning when simulating a mass casualty incident using virtual reality.MethodsThis study was conducted as an explorative interview study design using chart- stimulated recall technique for data collection. A qualitative content analysis was done, using the clinical reasoning cycle as a deductive matrix. A high-fidelity VR simulation with MCI scenarios was used and participants eligible for inclusion were 11 senior ACs.Results/conclusionAll phases of the clinical reasoning cycle were found to be reflected upon by the participants during the interviews, however with a varying richness of analytic reflectivity. Non-analytic reasoning predominated when work tasks followed specific clinical guidelines, but analytical reasoning appeared when the guidelines were unclear or non-existent. Using VR simulation led to training and reflection on action in a safe and systematic way and increased self-awareness amongst the ACs regarding their preparedness for MCIs. This study increases knowledge both regarding ACs clinical reasoning in MCIs, and insights regarding the use of VR for simulation training.

Amplified centrosomes-more than just a threat.

Centrosomes are major organizing components of the tubulin-based cytoskeleton. In recent years, we have gained extensive knowledge about their structure, biogenesis, and function from single cells, cell-cell interactions to tissue homeostasis, including their role in human diseases. Centrosome abnormalities are linked to, among others primary microcephaly, birth defects, ciliopathies, and tumorigenesis. Centrosome amplification, a state where two or more centrosomes are present in the G1 phase of the cell cycle, correlates in cancer with karyotype alterations, clinical aggressiveness, and lymph node metastasis. However, amplified centrosomes also appear in healthy tissues and, independent of their established role, in multi-ciliation. One example is the liver where hepatocytes carry amplified centrosomes owing to whole-genome duplication events during organogenesis. More recently, amplified centrosomes have been found in neuronal progenitors and several cell types of hematopoietic origin in which they enhance cellular effector functions. These findings suggest that extra centrosomes do not necessarily pose a risk for genome integrity and are harnessed for physiological processes. Here, we compare established and emerging 'non-canonical functions' of amplified centrosomes in cancerous and somatic cells and discuss their role in cellular physiology.

Cell cycle regulated expression of the WHI7 Start repressor gene

ABSTRACT Periodic transcriptional waves along the cell cycle ensure the accurate progression of the different cell cycle phases through the timely regulated expression of cell cycle proteins. The G1/S transition (Start) consists in the activation of a transcriptional program by G1 CDKs through the inactivation of Start transcriptional repressors, Whi5 and Whi7 in yeast or Rb in mammals. Here, we provide a comprehensive characterization of the transcriptional regulation of the Start repressor Whi7 in budding yeast. We found that WHI7 is a cell cycle regulated gene that shows periodic expression peaking in G1. Our results demonstrate that the three cell cycle transcriptional programs related to G1 and their corresponding transcription factors are involved in the transcriptional control of WHI7. Specifically, we identified that the transcriptional regulators Swi5 and Mcm1-Yox1, which are involved in late M and early G1 expression, and the transcription factors MBF and SBF, which are responsible for G1/S expression, are able to associate and regulate the WHI7 gene. In summary, in this work, we provide new mechanisms for the regulation of the Start repressor Whi7, which highlights the precise and complex control of the cell cycle machinery governing the G1/S transition.

Luteal Phase Defects and Progesterone Supplementation

Importance: Luteal phase defects (LPDs), or an insufficiency of progesterone production during the luteal phase of the menstrual cycle, have been identified as a potential cause of recurrent pregnancy loss (RPL), but its exact contribution to RPL is not well-defined. In addition, the role of exogenous progesterone supplementation during pregnancy remains controversial. Objective: The goal of this review is to provide an updated, evidence-based summary of LPD, including prevalence and potential pathophysiologic mechanisms, and to explore the current controversies regarding progesterone supplementation for management and treatment of RPL. Evidence Acquisition: A literature review identified relevant research using a PubMed search, Cochrane summaries, review articles, textbook chapters, databases, and society guidelines. Results: Endogenous progesterone plays a crucial role in the first trimester of pregnancy, and therefore, insufficiency may contribute to RPL. However, the precise relationship between LPD and RPL remains unclear. LPD is primarily a clinical diagnosis based on a luteal phase less than 10 days. Although there may be a possibility of incorporating a combined clinical and biochemical approach in defining LPD, the current lack of validated diagnostic criteria creates a challenge for its routine incorporation in the workup of infertility. Moreover, no treatment modality has demonstrated efficacy in improving fertility outcomes for LPD patients, including progesterone supplementation, whose inconsistent data do not sufficiently support its routine use, despite its minimal risk. It is imperative that women diagnosed with LPD should be worked up for other potential conditions that may contribute to a shortened luteal phase. Future work needs to focus on identifying a reproducible diagnostic test for LPD to guide treatment. Conclusions and Relevance: Currently, the perceived relationship between LPD and RPL is challenged by conflicting data. Therefore, patients with an abnormal luteal phase should undergo a thorough workup to address any other potential etiologies. Although supplemental progesterone is commonly used for treatment of LPD and RPL, inconsistent supporting data call for exogenous hormone therapy to be only used in a research setting or after a thorough discussion of its shortcomings.

<i>Solanum tuberosum</i> L. phytoene synthase genes (<i>StPSY1, StPSY2, StPSY3</i>) participate in the potato plant’s response to cold stress

The structure and phylogeny of the genes StPSY1, StPSY2 and StPSY3, encoding phytoene synthases from Solanum tuberosum L., were characterized. The expression of these genes in potato seedlings was studied in response to exposure to cold stress in the dark phase of the diurnal cycle as an imitation of night cooling. It was found that all three genes are activated when the temperature decreases, and the greatest response is observed for StPSY1. The response of the StPSY3 gene to cold stress and photoperiod has been demonstrated for the first time. A search was carried out for cis-regulatory elements in the promoter region and 5´-UTR of the StPSY genes and it was shown that the regulation of all three genes is associated with the response to light. The high level of low-temperature activation of the StPSY1 gene may be associated with the presence of cis-elements associated with sensitivity to cold and ABA.

Identification and functional analysis of a new cold induced LncRNA44154

With the development of high-throughput sequencing technology, numerous unknown long noncoding RNAs (lncRNAs) have been discovered. Preliminary research found that after being subjected to low-temperature enviroment, lncRNA44154 expression in the subcutaneous fat of pigs significantly increased. In order to analyze its biological function and regulatory mechanism, qRT-PCR was used to detect its spatiotemporal expression pattern. The nucleoplasmic isolation and FISH were used to locate it subcellular. Through overexpression or interference assays discussed the effect of lncRNA44154 on adipocyte proliferation and differentiation. RNA-seq was used to screen the biological pathways that lncRNA44154 may be involved in. RNA-pull down was used to find the interaction protein and double luciferase reporter gene detection experiment was used to validate the target gene. It was found that the expression of lncRNA44154 had tissue specificity and played a role in adipocyte proliferation. It was expressed in both cytoplasm and nucleus. After overexpression of lncRNA44154 in adipocytes, the expression level of Cyclins B, D, and E were all up-regulated and the cell proliferation ability was significantly enhanced. The number of positive cells increased significantly and the DNA replication activity was significantly enhanced. LncRNA44154 can promote the proliferation of porcine preadipocytes by encouraging cells to enter the S phase of the cell cycle. The result of interfering with lncRNA44154 is the opposite. Further analysis revealed that lncRNA44154 regulates intracellular lipid metabolism, inhibits the production of intracellular lipid droplets, and inhibits preadipocyte differentiation. RNA-seq results indicate that lncRNA44154 may be involved in biological pathways such as AMPK, PPAR and cAMP signaling pathway. It may work by regulating the RPS4X gene. This research may provide a new perspective for investigating the regulation of adipose metabolism by lncRNAs.

PSX-1 Genomic insights into reproduction traits of Nellore cattle: A meta-analysis of genomic regions

Abstract Enhancing reproductive efficiency could lead to economic benefits for Nellore producers. However, several factors limit our understanding of the main genetic factors controlling reproduction traits in Nellore cattle, including genetic differences between populations and statistical limitations. A meta-analysis can assist in pinpointing the most likely functional candidate genes, quantitative trait loci, and biological processes simultaneously associated with several traits in a group. Hence, the goal of this study was to perform a meta-analysis of genomic regions previously associated with reproduction traits in Nellore cattle, to improve our comprehension of the main genetic mechanisms regulating these traits within the breed. This study incorporated a total of 549 genomic regions sourced from 21 scientific publications, published between 2014 to 2024. The reproduction traits included in this study are scrotal circumference at various ages (365, 450, and 550 d), early pregnancy (< 31 mo of age), early puberty (defined as pregnancy at 18 mo), age at first calving, antral follicle count, calving interval, calving ease, testicular hypoplasia, stayability, heifer rebreeding, gestation length, anti-mullerian hormone concentrations, preweaning calf mortality, and post-natal mortality. All genomic regions identified in the literature were updated to the ARS-UCD1.2 genome assembly, and the Gallo R package was used to identify positional candidate genes associated with each genomic region. A total of 8,441 positional candidate genes were annotated and used in an overrepresentation analysis performed in meshr. The significant genes (adjusted P-values < 0.05) identified in the overrepresentation analysis underwent prioritization analyses using the GUILDify and ToppGene software. Subsequently, enrichment analysis of the prioritized overrepresented candidate genes was performed using the ClusterProfiler R package. The 8,441 annotated genes generated 1,757 overrepresented genes, of which 17 candidate genes were prioritized (FDR P -value ≤ 10-3). The overrepresented candidate genes that were prioritized are: SERTAD2, RFWD3, C1QTNF9B, SLFN14, CATSPERE, GFRA4, ZNF408, NOP58, ADGRG3, KIZ, REM2, FSCN3, DCAF11, ACSM4, ANKRD34B, CMKLR2-AS, and TRV-AAC1-1. The functional enrichment analysis highlighted the following genes: FSCN3 (exhibits highly specific expression in testis), CATSPERE (has a vital role in cellular processes related to reproduction and is necessary for normal fertility), ANKRD34B (associated with cytoplasm found in oocytes or early embryos), and RFWD3 (regulates the transition between phases of the mitotic cell cycle). All other prioritized genes also have roles in regulating metabolic pathways or biological processes related to reproduction, such as sperm capacitation, sperm motility, cilium or flagellum-dependent cell motility, mitotic cell cycle phase transition, and RNA endonuclease activity. The enrichment of the functional candidate genes identified highlights that these genes have an important role in the expression of reproduction traits in Nellore cattle. Candidate genes identified in this study can be used as target genes in gene expression studies, which are necessary to validate our findings.

Improvement of Docetaxel Efficacy through Simultaneous Blockade of Transcription Factors NF-κB and STAT-3 Using Pentoxifylline and Stattic in Prostate Cancer Cells

Prostate cancer (PCa) is a common and deadly disease in men. It is often diagnosed at advanced stages, at which point patients are treated mainly with docetaxel (DTX), which is effective but limited by resistance and side effects. Overactivation of the transcription factors NF-κB and STAT-3 plays a critical role in the development, progression, and chemoresistance of PCa. In this regard, the blockade of NF-κB with pentoxifylline (PTX) or STAT-3 with Stattic (STT) is known to increase the sensitivity of tumor cells to chemotherapy in both in vitro and in vivo models. We investigated whether simultaneous blockade with PTX and STT increases the efficacy of the DTX treatment in inducing apoptosis in metastatic castration-resistant PCa DU-145 cells. Our results showed that the combination of PTX + STT led to higher levels of apoptosis, regardless of whether or not DTX was present in the treatment. Determining caspases and ΔΨm indicates that the intrinsic caspase pathway of apoptosis is principally favored. In addition, this combination inhibited proliferation and colony formation and arrested the cell cycle in the G1 phase. These results indicate that the combination of the PTX + STAT-3 inhibitor could potentiate DTX effectively, opening the possibility of effective treatments in PCa.

Staging of Estrous Cycle in Rats using Vaginal Cytology and Visual Assessment

The determination of different phases of estrous cycle in lab animals is important for reproductive interventions and other experiments related to animal reproduction where rats are used as experimental models. A total 21 Wistar albino (which had completed their pubertal stage ( greater than 4 weeks) weighing approximately 100- 200 g were used in this experiment. Visual assessment was done to observe vaginal opening during different phases of the estrous cycle. This was followed by collection of vaginal discharge samples by flushing it with 0.1 ml of distilled water using micropipette. Vaginal cytology was performed in 21 rats thrice daily, along with visual assessment. The average length of estrous cycle in rats was recorded to be 4-5 days with average duration of proestrus, estrus, metestrus and diestrus of 24, 24-36, 12 and 48 hours, respectively. The average length of estrous cycle in rats was 4-5 days with recorded average duration of proestrus, estrus, metestrus and diestrus of 24, 24-36, 12 and 48 hours, respectively. Vaginal cytology can be considered as a better option compared to visual assessment for assessment of reproductive status in rats.