Wetlands are of great importance for biodiversity and nature conservation, especially geographically isolated wetlands (GIW). Yet literature about the ecological value of such GIW is missing, especially at the edge of the distribution of endangered species such as amphibians. In 2018 and 2022, we monitored amphibian communities in 15 isolated (GIW) and 12 non-isolated (nGIW) ponds by counting individuals using three methods: (1) capturing with hand nets, (2) visual counting, and (3) capturing with fyke traps. The three methods provided similar results, showing the great importance of GIW for amphibians, especially newts, whose abundance was 5–13 times greater in GIW compared to nGIW. The largest numbers of species and individuals (adults and larvae) were found in isolated wetlands (GIW). In non-isolated water bodies (nGIW) where more than 10 individuals of the Chinese sleeper Perccottus glenii, an alien invasive fish, were found, amphibians were not found at all. Importantly, between 2018 and 2022, the northern crested newt, T. cristatus, dramatically decreased in the nGIW. As a result of our work, it was revealed that the reconstruction of geographically isolated wetlands is very important for the conservation of amphibian biodiversity in a changing climate. One of the most effective measures aimed at protecting amphibians from negative factors—the spread of alien invasive fish species and diseases—is the reconstruction of wetlands in historically exploited landscapes with the creation of a wide range of water bodies yet broadly dominated by geographically isolated ponds.
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