Past Research Articles

Early Thinning: A Promising Tool to Prevent Fistulina hepatica Heart Rot in Castanea sativa Coppice Stands

Castanea sativa is a high-value tree species whose stands have faced significant threats over the past century. The occurrence of one such threat, Chestnut Red Stain—a heartwood discoloration caused by the fungus Fistulina hepatica—has recently increased. This disease devalues the timber by up to 70% due to the rejection of stained wood by the industry. This study aimed to evaluate the effects of three management strategies on the occurrence of F. hepatica in chestnut coppice stands. Additionally, the co-occurrence of F. hepatica and Cryphonectria parasitica, both highly prevalent in the study area, was assessed. In 2013, three different silvicultural treatments were applied to five plots. Seven years later, the stand characteristics were measured, and the incidence of F. hepatica was evaluated using molecular tools. Data modeling revealed that the quadratic mean diameter before the interventions was related to the incidence of F. hepatica. Our results suggest that the thinning at earlier stand stages may be more critical than the type or intensity of the thinning in reducing the incidence of the fungus in the mid-term. This finding provides forest managers with new guidance to improve silvicultural treatments and prevent F. hepatica damage.

Expanding Student Success: Prioritizing Student Thriving and Academic Coaching Within Community Colleges

Community college student success metrics have become increasingly synonymous with the completion rate and other key academic performance measures over the past quarter century. These measures, however, do not fully capture students’ subjective interpretations of success, including their individual goals and aspirations. This article aims to broaden the understanding of student success by incorporating students’ unique perspectives and exploring the potential of the “thriving” concept to allow for more flexibility with respect to self-determined aspirations and personal growth. The study engages directly with community college students to understand their personal definitions of success and examines the emerging practice of academic coaching as a means to foster thriving. The findings suggest that students hold the key to unlocking their unique version of success. Institutionally, they point to the value of integrating thriving as a third pillar of success, as well as developing institutional cultures, systems, and practices that prioritize student-centered learning and support students’ individual goals, growth, and well-being.

Long-term changes of agricultural land over the last century in Romania. The showcase of Romanian plain

The current paper is a space-time analysis of agricultural land transitions in the Romanian Plain, which has been significantly impacted during the past century by the fundamental structural and functional transformations. Five maps, derived from historical cartographic materials and the recent CORINE Land Cover databases, were spatially analysed using a transition matrix procedure. The aim was to identify and measure the magnitude of the main land use/cover change flows related to agricultural lands. Furthermore, several underlying factors of the spatial and functional transformations have been discussed so as to understand the evolution of the historical agricultural lands over time. The results show that the most significant changes occurred between 1912 and 1970, when 38 % of the Romanian Plain’s surface underwent transformations, with notable regional differences. The analysis of the change flows in relation to the underlying factors was instrumental in explaining the land processes, an approach that can be used to understand future landscape transformations.

The Role of The International Court of Justice ICJ in Redressing the Environmental Damages Caused by States During Wartime

Over the past century, it has been more evident that one manifest consequence of conflict is the detrimental impact on the environment. Although there has been beneficial growth in international environmental law, the environment has nonetheless suffered from following international armed conflicts, including the Kosovo conflict, the Iraq war, the Israel-Lebanon war, and Ukraine. In fact, there has been no legal responsibility imposed on any State for violating the responsibilities outlined in Articles 35 and 55 of Additional Protocol I. Remarkably, the International Court of Justice ICJ has acknowledged that environmental damage is eligible for compensation and to take "active restoration measures". the main problem is that the environmental damage persists even after the war has ceased. This article attempts to analyze the strengths and weaknesses of the State responsibility for environmental damage during wartime before the ICJ. This article shows the significant contributions from ICJ to protect the environment but while also showing the ambiguity related to the development of reparation for the damage caused during wartime. The purpose of this article is to examine the extent to which international law could apply to environmental damage in wartime. How much environmental damage needs to happen how much reparation must be deliberated? The article explores a methodology for evaluating environmental damage caused during a conflict by the ICJ and takes the lessons learned from the jurisprudence of the ICJ to determine the appropriate amount of compensation for such damage. This article examines the ineffectiveness of the current international legal framework for dealing with environmental damage during wartime. It provides an overview of the historical context of environmental damage in armed conflicts and a review of existing customary and conventional laws.

Assembly and annotation of a chromosome-level reference genome for the endangered Colorado pikeminnow Ptychocheilus lucius.

Advancements in genome sequencing technology have brought unprecedented accessibility of high-throughput sequencing to species of conservation interest. The potential knowledge gained from application of these techniques is maximized by availability of high-quality, annotated reference genomes for endangered species. However, these vital resources are often lacking for endangered minnows of North America (Cypriniformes: Leuciscidae). One such endangered species, Colorado pikeminnow (Ptychocheilus lucius) is the largest North American minnow and the top-level native aquatic predator in the Colorado River Basin of the southwestern United States and northwestern Mexico. Over the past century Colorado pikeminnow has suffered habitat loss and population declines due to anthropogenic habitat modifications and invasive species introductions. The lack of genetic resources for Colorado pikeminnow has hindered conservation genomic study of this unique organism. This study seeks to remedy this issue by presenting a high-quality reference genome for Colorado pikeminnow developed from Pacific Biosciences HiFi sequencing and Hi-C scaffolding. The final assembly was a 1.1 Gb genome comprised of 305 contigs including 25 chromosome-sized scaffolds. Measures of quality, contiguity, and completeness met or exceeded those observed for Danio rerio (Danionidae) and two other Colorado River Basin leuciscids (Meda fulgida and Tiaroga cobitis). Comparative genomic analyses identified enrichment of gene families for growth, development, immune activity, and gene transcription; all of which are important for a large-bodied piscivorous fish living in a dynamic environment. This reference genome will provide a basis for important conservation genomic study of Colorado pikeminnow and help efforts to better understand the evolution of desert fishes.

Dynamics of Neurogenic Signals as Biological Switchers of Brain Plasticity.

The discovery of adult neurogenesis in the middle of the past century is considered one of the most important breakthroughs in neuroscience. Despite its controversial nature, this discovery shaped our concept of neural plasticity, revolutionizing the way we look at our brains. In fact, after the discovery of adult neurogenesis, we started to consider the brain as something even more dynamic and highly adaptable. In neurogenic niches, adult neurogenesis is supported by neural stem cells (NSCs). These cells possess a unique set of characteristics such as being quiescent for long periods while actively sensing and reacting to their surroundings to influence a multitude of processes, including the generation of new neurons and glial cells. Therefore, NSCs can be viewed as sentinels to our brain's homeostasis, being able to replace damaged cells and simultaneously secrete numerous factors that restore regular brain function. In addition, it is becoming increasingly evident that NSCs play a central role in memory formation and consolidation. In this review, we will dissect how NSCs influence their surroundings through paracrine and autocrine types of action. We will also depict the mechanism of action of each factor. Finally, we will describe how NSCs integrate different and often opposing signals to guide their fate.

Climatic controls of fire activity in the red pine forests of eastern North America

Large-scale modes of climate variability influence forest fire activity and may modulate the future patterns of natural disturbances. We studied the effects of long-term changes in climate upon the fire regime in the red pine forests of eastern North America using (a) a network of sites with dendrochronological reconstructions of fire histories over 1700–1900 A.D., (b) reconstructed chronologies of climate indices (1700–1900), and (c) 20th century observational records of climate indices, local surface climate and fire (1950s-2021). We hypothesized that (H1) there are states of atmospheric circulation that are consistently associated with increased fire activity, (H2) these states mark periods of increased climatological fire hazard, and (H3) the observed decline in fire activity in the 20th century is associated with a long-term decline in the frequency of fire-prone states.At the annual scale, years with significantly higher fire activity in the reconstructed and modern fire records were consistently associated with the positive phases of the Pacific North American pattern (PNA), either independently or in combination with the positive phase of the El Niño-Southern Oscillation index (ENSO). During years with both ENSO and PNA in their positive state, the region experienced positive mid-tropospheric heights and temperature anomalies resulting in drought conditions. The fire-prone climate states identified in the reconstructed records became less frequent in 1850 but re-emerged in the 20th century. While our study did not demonstrate a direct influence of climate on the observed decrease in fire activity in the 20th century, it does reveal a clear climate signal embedded within the fire history reconstruction of the region over the past centuries. This study underscores the importance of considering large-scale climatic patterns in understanding historical fire regimes and highlights their role for future fire dynamics in the region and shaping ecological effects of future fires.

How I Learned to Stabilize Rice Prices, and Why: A Retrospective Essay

This paper for the 20th anniversary special issue of the Asian Journal of Agriculture and Development traces the evolution of my thinking on what to do about food price instability. Now that feeding the world is again front-page news, I am trying to figure out what pieces of my own thinking over the past half century might provide guidance on how to proceed. The world food system is under great stress as I write (early 2024), but this is probably a good time for some historical perspective as well as active engagement from people with knowledge of on-the-ground realities. I apologize in advance for the extensive listing of my own publications, but their story is my story.

A Weight-of-Evidence Approach for Understanding the Recovery of Okanagan Sockeye Salmon.

The productivity of Pacific Sockeye salmon (Oncorhynchus nerka) in the Columbia River has been declining over the past century. Yet, the Okanagan River Sockeye salmon population, which spawns in the Okanagan River, a Canadian tributary of the Columbia River, has seen a remarkable turnaround in abundance. Different hypotheses and lines of evidence covering multiple spatial scales have been proposed to explain this recovery; but they have never been comprehensively assessed. We adopted a weight-of-evidence approach to systematically assess the relative likelihood that each of these causal hypotheses contributed to the observed recovery. Our analysis disentangles the relative consequences of a set of environmental management actions that have been implemented to augment the Sockeye salmon freshwater productivity, while accounting for changes in freshwater and marine environmental conditions. Our list of potentially explanatory causal factors (anthropogenic and natural) included: (1) changes in escapement concurrent with improving local fish passage, (2) the implementation of fish-friendly flows in the Okanagan River, (3) initiating a hatchery restocking program, (4) potential improvements to Columbia dam operations to support higher relative survival of out-migrating juvenile fish, (5) possible shifts in survival-favorable conditions in the coastal marine environment for ocean-going life stages, and (6) broader changes to multi-stock harvest regimes in the Columbia River. Our assessment leveraged comparisons with the population dynamics of another Sockeye salmon stock in the Columbia River basin to differentiate between the impacts of management actions taken within the Okanagan watershed (our focus) from those occurring over the broader basin and marine scale. The results suggest that while shifts towards survival-favorable conditions in the coastal marine environment in 2007 played an important role in the upturn of the Okanagan population, alone it cannot explain the rate at which the Okanagan River Sockeye salmon recovered. Strong evidence supports the combined effect of increased escapement in conjunction with establishing and securing fish-friendly flows during spawning, incubation, and alevin emergence. Additionally, Sockeye salmon restocking improved the resilience of the stock against density-independent mortality events. These combined basin-level management actions played a pivotal role in magnifying the recovery trajectory afforded by improved marine survivorship. The spectacular response of the Okanagan River Sockeye salmon to the holistic perspectives and management interventions of Indigenous and other caretakers provides hope that other Pacific salmon stocks can be stabilized and recovered.

Biotechnology and Genomic Approaches to Mitigating Disease Impacts on Forest Health

Outbreaks of insects and diseases are part of the natural disturbance regime of all forests. However, introduced pathogens have had outsized impacts on many dominant forest tree species over the past century. Mitigating these impacts and restoring these species are dilemmas of the modern era. Here, we review the ecological and economic impact of introduced pathogens, focusing on examples in North America. We then synthesize the successes and challenges of past biotechnological approaches and discuss the integration of genomics and biotechnology to help mitigate the effects of past and future pathogen invasions. These questions are considered in the context of the transgenic American chestnut, which is the most comprehensive example to date of how biotechnological tools have been used to address the impacts of introduced pathogens on naïve forest ecosystems.

American imperial exceptionalism? Texas secondary World History depictions of American empire, 1925–2016

ABSTRACT This article explores the connection between American exceptionalism and empire denialism by examining high-school World History textbooks approved for use in the state of Texas from the 1920s to 2016. Scholarship suggests that the powerful ideology of American exceptionalism is deeply uneasy about the role of the United States as an imperial power in the late nineteenth and early twentieth centuries. But despite this widespread assumption, World History textbooks for the past century have routinely labelled the United States an empire, and directly compared US actions with those of European colonising powers. Some textbooks portrayed this as a unique and aberrant time in US history. But other textbook accounts over the past century have made the case that US imperialism brought about material and political benefits to colonised peoples. In other words, a common thread in World History textbooks suggests that America created an exceptional empire. American imperialism was linked to an underlying narrative of the spread of European or Western civilisation, viewed as a cornerstone of modern world history.

The 2023 South Sudanese outbreak of Hepatitis E emphasizes ongoing circulation of genotype 1 in North, Central, and East Africa

In April 2023, an outbreak of acute hepatitis was reported amongst internally displaced persons in the Nazareth community of South Sudan. IgM serology-based screening suggested the likely etiologic agent to be Hepatitis E virus (HEV). In this study, plasma specimens collected from anti-HEV IgM-positive cases were subjected to additional RT-qPCR testing and sequencing of extracted nucleic acids, resulting in the recovery of five full and eight partial HEV genomes. Maximum likelihood phylogenetic reconstruction confirmed the genomes belong to HEV genotype 1. Using distance-based methods, we show that genotype 1 is best split into three sub-genotypes instead of the previously proposed seven, and that these sub-genotypes are geographically restricted. The South Sudanese sequences confidently cluster within sub-genotype 1e, endemic to northeast, central, and east Africa. Bayesian Inference of phylogeny incorporating sampling dates shows that this new outbreak is not directly descended from other recent local outbreaks for which sequence data is available. However, the analysis suggests that sub-genotype 1e has been consistently and cryptically circulating locally for at least the past half century and that the known outbreaks are often not directly descended from one another. The ongoing presence of HEV, combined with poor sanitation and hygiene in the conflict-affected areas in the region, place vulnerable populations at risk for infection and its more serious effects, including progression to fulminant hepatitis.

A Comprehensive Review of Potential Adaptation and Mitigation Strategies in Agriculture in the Current Climate Change Scenarios

Climate change has a major impact on agriculture worldwide, but in certain regions, like India, this impact is more pronounced than in others. India's large population, heavy reliance on natural resources, and lack of coping mechanisms make it difficult for the country to adapt to the changing climate. India has experienced a notable warming trend over the past century, with an approximate 0.60 °C increase in temperature. This trend is anticipated to continue, possibly having catastrophic consequences for agricultural productivity and food security. Climate change is predicted to result in increasingly variable growing conditions for many crops, making it more challenging for farmers to schedule the planting and harvesting of their crops. Rapid reaction times and coordination are required to mitigate the consequences of climate change on Indian agriculture. This means implementing adaptation tactics, such as cultivating crop varieties that can tolerate high temperatures, promoting water-efficient irrigation techniques, preserving soil health, and enhancing climate resilience through integrated farming systems. India can lessen the negative effects of climate change on its agriculture sector and guarantee food security for its growing population by taking proactive steps and implementing sustainable farming practices.

Insights into the genetic theory of infectious diseases.

Over the past century, classical approaches from microbiology and immunology have produced spectacular results in the control of infectious diseases. However, the recent SARS-COV-2 pandemic has highlighted our continued failure to control some infections. Other microorganisms still pose a threat to humanity such as HIV, Ebola, and influenza viruses. It seems that conventional approaches are not able to solve all the current problems caused by infectious diseases. Human genetics has shown that infections have a strong genetic determinism that can lead to a predisposition or resistance to infections. This explains much of the clinical variability observed in individuals infected with the same pathogen. The identification of the genetic etiology allows a better understanding of the pathogenesis of infectious diseases and, consequently, the consideration of appropriate preventive and therapeutic strategies. This review provides insights into the genetic theory and the concrete evidence to support it. We highlight the role of primary immunodeficiencies in the discovery of Mendelian and monogenic susceptibility to infections, then we show how genetic and phenotypic heterogeneity, redundancy, and resistance to infection manifest in the context of this genetic determinism. To effectively combat the constant threat of microbes, it is essential to integrate human genetics with microbiology to examine the interactions between pathogens and our immune system.

High-resolution Standardized Precipitation Evapotranspiration Index (SPEI) reveals trends in drought and vegetation water availability in China

Understanding vegetation water availability can be important for managing vegetation and combating climate change. Changes in vegetation water availability throughout China remains poorly understood, especially at a high spatial resolution. Standardized Precipitation Evapotranspiration Index (SPEI) is an ideal water availability index for assessing the spatiotemporal characteristics of drought and investigating the vegetation-water availability relationship. However, no high-resolution and long-term SPEI datasets over China are available. To fill this gap, we developed a new model based on machine learning to obtain high-resolution (1 km) SPEI data by combining climate variables with topographical and geographical features. Here, we analyzed the long-term drought over the past century (1901–2020) and vegetation-water availability relationship in the past two decades (2000–2020). The century-long drought trend analyses indicated an overall drying trend across China with increasing drought frequency, duration, and severity during the past century. We found that drought events in 1901–1961 showed a larger increase than that in 1961–2020, with the Tibetan Plateau showing a significant drying trend during 1901–1960 but a wetting trend during 1961–2020. There were 13.90% and 28.21% of vegetation in China showing water deficit and water surplus respectively during 2000–2020. The water deficit area significantly shrank from 2000 to 2020 across China, which is dominated by the significant decrease in water deficit areas in South China. Among temperature, precipitation, and vegetation abundance (LAI), temperature is the most important factor for the vegetation-water availability dynamics in China over the past two decades, with high temperature contributing to water deficit. Our findings are important for water and vegetation management under a warming climate.

Датирование современной осадочной толщи краевых бассейнов Восточного Мурмана (Кольский полуостров) на примере губ Ярнышная и Зеленецкая

The authors have studied sediment genesis in the Kola Peninsula bays, the most popular and developed part of the coastal shelf by the population. The main tool used is the method of radioisotope chronology of sedimentary layers based on changes in the specific activity of the natural isotope 210Pb and technogenic 137Cs. It has been revealed that the marginal basins of Murman are characterized by monotonous sedimentation in recent centuries. The average sedimentation rate is 0.15—0.17 cm/year. The sedimentary sequence is composed of silty-pelite-sized material. It has been established that the role of ice rafting in the formation of bottom sediment in coastal bays has decreased over the past centuries.

Symbiosis between the Javan rhinoceros and slender-billed crow: A novel inferred cleaning mutualism.

Over the past century, the Javan rhinoceroses' (Rhinoceros sondaicus) secluded nature and low population size have led to a gap in knowledge of their ecology. With fewer than 80 individuals surviving in a single population in West Java, Indonesia, the Javan rhinoceros is one of the most critically endangered mammals in the world. As part of a pilot bioacoustics study of the Javan rhinoceros in 2019, we systematically reviewed camera trap footage from the core Javan rhinoceros range in Ujung Kulon National Park (UKNP). In doing so, we discovered a previously unknown interaction between the Javan rhinoceros and the slender-billed crow (Corvus enca), in which the crow finds and eats ectoparasites from the rhinoceros (Figure1). We describe this interaction and suggest that it may represent a cleaning mutualism with benefits for both the crow and the rhinoceros.

Climate change increases flowering duration, driving phenological reassembly and elevated co-flowering richness.

Changes to flowering phenology are a key response of plants to climate change. However, we know little about how these changes alter temporal patterns of reproductive overlap (i.e. phenological reassembly). We combined long-term field (1937-2012) and herbarium records (1850-2017) of 68 species in a flowering plant community in central North America and used a novel application of Bayesian quantile regression to estimate changes to flowering season length, altered richness and composition of co-flowering assemblages, and whether phenological shifts exhibit seasonal trends. Across the past century, phenological shifts increased species' flowering durations by 11.5 d on average, which resulted in 94% of species experiencing greater flowering overlap at the community level. Increases to co-flowering were particularly pronounced in autumn, driven by a greater tendency of late season species to shift the ending of flowering later and to increase flowering duration. Our results demonstrate that species-level phenological shifts can result in considerable phenological reassembly and highlight changes to flowering duration as a prominent, yet underappreciated, effect of climate change. The emergence of an autumn co-flowering mode emphasizes that these effects may be season-dependent.

Offshore Tech Evolves for Deeper Waters, Deeper Reservoirs

_ Since the late 1930s, the offshore industry has moved from installing the first offshore platform in 14 ft of water to the ultradeepwater 20K era. Advances in seismic, drilling, and development technologies all helped move the industry from shallow waters to ultradeepwaters, from lower-pressure reservoirs to high-pressure/high-temperature (HP/HT) reservoirs, and beyond known hydrocarbon areas like the Gulf of Mexico (GOM) into frontier regions, like Guyana. Brent Gros, vice president of Chevron’s GOM business unit, told JPT there is a stark difference between the GOM of today and how it was when he first started working in the area 26 years ago. Now, he said, operating further from land in water depths of 4,000 to 7,000 ft is the norm. “We’re not really taking crew boats to those platforms, given the distance from shore. We operate as well at much higher pressures,” he said. Jayme Meier, ExxonMobil’s vice president of deepwater project delivery, echoed that sentiment. At the dawn of the offshore era, “anything that was in any amount of water was, by definition, deep water, because it was as far as you could go,” she told JPT. “And we are now at the stage where we are routinely doing things that are in 2000 m (6,560 ft) of water or more, and we continue to press boundaries and technical limits to be able to move further out in water depth.” As such, she said, the fundamental definition of deep water has shifted in the past quarter century. Where To Drill? “To find oil and gas resources, we rely on seismic, and we’ve seen huge advancements in seismic over the past 25 years,” Gros said. 3D seismic technology, pioneered half a century ago, sharpened the view into the world’s reservoirs, and new seismic processing methods have helped identify new opportunities. “Now we have ocean-bottom node surveys, which essentially take a lot of the noise out of surveys, allowing us to image deeper with a clearer image. We also have four-dimensional seismic, which helps us understand the performance of reservoirs through time,” he said. “If you compare the seismic capability today to what we had in the past, it’s like seeing the world with a new pair of glasses, and it really helps us understand potential prospects in a more-complex geological setting and pursue those opportunities in deeper water and deeper horizons than we previously would have been able to.” Deepwater Challenges Moving into ever deeper waters requires more tech and more-capable drilling rigs. It also requires precision, Meier noted. “Technology allows us to position a floating rig on the surface of the ocean. It’s got to be able to drill at very precise angles and precise locations, and significant extensions of technology were needed to enable that to happen. We’re at the point now where we’re even doing multizone completions on our wells in deep water,” she said. point now where we’re even doing multizone completions on our wells in deep water,” she said. She called deepwater “by far the most exciting space” to work in. It requires planning and designing for facilities that must withstand intense, harsh, and constantly changing conditions throughout its lifetime.

Chronological evaluation of polycyclic aromatic hydrocarbons in sediments of tangxun lake in central China and impacts of human activities.

This study sheds light on the contamination of polycyclic aromatic hydrocarbons (PAHs) in Tangxun Lake sediments, an urban lake reflecting environmental changes in Central China. By analyzing sediment cores from both the inner and outer areas of the lake, we determined the historical trends and sources of PAHs over the past century. The results reveal a significant increase in PAHs concentrations, particularly since the 1980s, coinciding with China's rapid urbanization and industrialization. Using diagnostic ratios and Absolute principal component score-multivariate linear regression (APCS-MLR) methods, we identified petroleum combustion, coal combustion, and biomass combustion as the primary sources of PAHs in the lake sediments. The spatial analysis indicates higher PAHs levels in the inner lake, likely due to its closer proximity to industrial activities. Moreover, by comparing PAH trends in Tangxun Lake with those in other urban, suburban, and remote lakes across China, based on data from 49 sedimentary cores, we highlight the impact of regional socio-economic dynamics on PAH deposition. These insights are crucial for developing effective pollution mitigation strategies and promoting sustainable development in rapidly urbanizing regions.