Parasitic Plants Research Articles

Conservation opportunities for rare and endemic tropical mistletoes

Conservation of parasites is not as appealing as in the case of free-living organisms. Although this is worst for animal parasites, parasitic plants — and mistletoes in particular — are considered a menace to trees and shrubs, and as so, there is a prevailing sentiment that they should be eradicated rather than protected. To deconstruct this perception, we answered three important questions: Why, what, and how to protect mistletoes? Then, based on those questions, we propose a conservation plan, especially designed for tropical species. For the Why question, we briefly reviewed the functional roles of mistletoes worldwide and provided evidence of their positive impact on other species and ecosystem functioning. For the What question, we used a framework to identify the main threats to mistletoes and commented on each one of them using world examples. Then, we used the Geocat tool to map and calculate the Extent of Occurrence (EOO) and Area of Occupancy (AOO) for each endemic and rare Brazilian mistletoe species, as an example to aid in tropical mistletoe conservation. Finally, for the How question, we listed practical recommendations to create a plan for conserving endemic and rare tropical mistletoes.

Biocontrol agent amendments shape the soybean rhizosphere in a cyst nematode (Heterodera glycines) conducive soil over a two-year field trial

Plant-associated beneficial microorganisms play a vital role in promoting plant health, fitness, and disease suppression, leading to improved plant growth and protection against specific plant parasites. Microbial amendments may reduce nematode parasite populations and ensure plant yield, yet their long-term impact on the native plant microbiome under field conditions is not well understood. In this study, we evaluated the effectiveness of biocontrol products against soybean cyst nematode (SCN) using two application methods over a two-year period under field conditions. Pochonia chlamydosporia PC10 (Rizotec), Bacillus methylotrophicus UFPEDA 20 (Onix), and Trichoderma koningiopsis GF 362 were applied either through seed inoculation or in-furrow treatment at planting. The treatments effectively reduced the nematode population, with T. koningiopsis showing significant deviations from the control and leading to a notable increase in yield. No difference in the Shannon diversity index was detected for the alpha-diversity of root-associated 16S, ITS2, and 18S communities. The dominant phyla were Proteobacteria, Acidobacteria, Actinobacteria for 16S; Ascomycota, Basidiomycota, Mortierellomycota for ITS2; and Ascomycota, and Cercozoa for 18S. In the 16S community, T. koningiopsis and B. methylotrophicus caused a 25 % increase in the relative abundance of Sphingomonas spp. compared to the control. Additionally, the relative abundance of Mortierella spp. significantly increased by 50 % in both the T. koningiopsis and B. methylotrophicus treatments compared to the control. Both treatments also led to a significant reduction in Fusarium spp. by 37.5 % and 31.5 %, respectively. Co-occurrence network analysis revealed that communities were disrupted after the first application, but grew more intricate and cohesive after the second year of biocontrol product amendment. T. koningiopsis and B. methylotrophicus demonstrated potential in reducing nematode and Fusarium populations, leading to increased yield production. However, under high nematode pressure, relying solely on biocontrol measures does not guarantee a reduction in SCN population or yield improvement. Manipulating the microbial community to reduce harmful organisms and promote biocontrol-related species may offer long-term benefits.

Tomato Mutants Reveal Root and Shoot Strigolactone Involvement in Branching and Broomrape Resistance.

The phytohormones strigolactones (SLs) control root and shoot branching and are exuded from roots into the rhizosphere to stimulate interaction with mycorrhizal fungi. The exuded SLs serve as signaling molecules for the germination of parasitic plants. The broomrape Phelipanche aegyptiaca is a widespread noxious weed in various crop plants, including tomato (Solanum lycopersicum). We have isolated three mutants that impair SL functioning in the tomato variety M82: SHOOT BRANCHING 1 (sb1) and SHOOT BRANCHING 2 (sb2), which abolish SL biosynthesis, and SHOOT BRANCHING 3 (sb3), which impairs SL perception. The over-branching phenotype of the sb mutants resulted in a severe yield loss. The isogenic property of the mutations in a determinate growth variety enabled the quantitative evaluation of the contribution of SL to yield under field conditions. As expected, the mutants sb1 and sb2 were completely resistant to infection by P. aegyptiaca due to the lack of SL in the roots. In contrast, sb3 was more susceptible to P. aegyptiaca than the wild-type M82. The SL concentration in roots of the sb3 was two-fold higher than in the wild type due to the upregulation of the transcription of SL biosynthesis genes. This phenomenon suggests that the steady-state level of root SLs is regulated by a feedback mechanism that involves the SL signaling pathway. Surprisingly, grafting wild-type varieties on sb1 and sb2 rootstocks eliminated the branching phenotype and yield loss, indicating that SL synthesized in the shoots is sufficient to control shoot branching. Moreover, commercial tomato varieties grafted on sb1 were protected from P. aegyptiaca infection without significant yield loss, offering a practical solution to the broomrape crisis.

Clarifying the Functional Role of Serotonin in Meloidogyne graminicola Host Plant Parasitism by Immunolocalization and RNA Interference.

Serotonin (5-hydroxytryptamine) is an essential neurotransmitter involved in regulating various behaviors in plant-parasitic nematodes, including locomotion, egg laying, feeding, and mating. However, the functional role of serotonin in root-knot nematode invasion of host plants and the molecular mechanisms underlying feeding behavior remain poorly understood. In this study, we tested the effects of exogenous serotonin and the pharmacological compounds fluoxetine and methiothepin on the feeding behaviors of Meloidogyne graminicola. Our results suggested that M. graminicola possesses an endogenous serotonin signaling pathway and that serotonin plays a crucial role in modulating feeding behaviors in M. graminicola second-stage juveniles. We also identified and cloned the serotonin synthesis enzyme tryptophan hydroxylase (Mg-tph-1) in M. graminicola and investigated the role of endogenous serotonin by generating RNA interference nematodes in Mg-tph-1. Silencing Mg-tph-1 substantially reduced nematode invasion, development, and reproduction. According to the immunostaining results, we speculated that these serotonin immunoreactive cells near the nerve ring in M. graminicola are likely homologous to Caenorhabditis elegans ADFs, NSMs, and RIH serotonergic neurons. Furthermore, we investigated the impact of phytoserotonin on nematode invasion and development in rice by overexpressing OsTDC-3 or supplementing rice plants with tryptamine and found that an increase in phytoserotonin increases nematode pathogenicity. Overall, our study provides insights into the essential role of serotonin in M. graminicola host plant parasitism and proposes that the serotonergic signaling pathway could be a potential target for controlling plant-parasitic nematodes.

Genome-wide association studies reveals new candidate genes associated with resistance to Striga gesneroides in Cowpea [Vigna unguiculata (L.) Walp.] accessions from sub-Saharan Africa

Parasitic plant Striga gesneroides reduces cowpea productivity in sub-Saharan Africa, leading to substantial yield losses. This weed is the major reason for land abandonment by many farmers. While various methods have been proposed for managing Striga invasion and parasitism, host-plant resistance remains the most effective and affordable option for small-scale farmers in the sub-region. This study aims to expedite the improvement of Striga resistance breeding through marker-assisted selection by identifying genomic regions and candidate genes associated with Striga resistance indicator traits using association mapping. A panel of 188 cowpea accessions assembled from five gene banks in West Africa were phenotyped for two years under Striga-infested and non-infested research conditions. These accessions were equally genotyped using the medium-density genotyping of the Diversity Arrays Technology sequencing (DArTseq) platform to obtain marker information. High broad-sense heritability estimates were observed for Striga resistance status (SRS), number of Striga per plot (NSPlot), and Pod weight (PW) while low heritability estimates were observed for fodder weight (FW) and Plant Aspect (PASP). Twenty-four SNP markers were identified across SRS, NSPlot, FW, PASP, and PW under Striga-infested conditions. Under non-infested conditions, 17 SNPs were identified across FW, PASP, and PW. Gene annotation of the significant SNPs revealed candidate genes such as ubiquitin ligase activity, cell wall reinforcement protein, and pathogenesis-related protein. These genes function in plant growth regulation, development, and defense mechanisms. This study offers valuable insights for marker selection, validation, and deployment in cowpea improvement for Striga resistance in SSA.

Diversity and evolution of transposable elements in the plant-parasitic nematodes

BackgroundTransposable elements (TEs) are mobile DNA sequences that propagate within genomes, occupying a significant portion of eukaryotic genomes and serving as a source of genetic variation and innovation. TEs can impact genome dynamics through their repetitive nature and mobility. Nematodes are incredibly versatile organisms, capable of thriving in a wide range of environments. The plant-parasitic nematodes are able to infect nearly all vascular plants, leading to significant crop losses and management expenses worldwide. It is worth noting that plant parasitism has evolved independently at least three times within this nematode group. Furthermore, the genome size of plant-parasitic nematodes can vary substantially, spanning from 41.5 Mbp to 235 Mbp. To investigate genome size variation and evolution in plant-parasitic nematodes, TE composition, diversity, and evolution were analysed in 26 plant-parasitic nematodes from 9 distinct genera in Clade IV.ResultsInterestingly, despite certain species lacking specific types of DNA transposons or retrotransposon superfamilies, they still exhibit a diverse range of TE content. Identification of species-specific TE repertoire in nematode genomes provides a deeper understanding of genome evolution in plant-parasitic nematodes. An intriguing observation is that plant-parasitic nematodes possess extensive DNA transposons and retrotransposon insertions, including recent sightings of LTR/Gypsy and LTR/Pao superfamilies. Among them, the Gypsy superfamilies were found to encode Aspartic proteases in the plant-parasitic nematodes.ConclusionsThe study of the transposable element (TE) composition in plant-parasitic nematodes has yielded insightful discoveries. The findings revealed that certain species exhibit lineage-specific variations in their TE makeup. Discovering the species-specific TE repertoire in nematode genomes is a crucial element in understanding the evolution of genomes in plant-parasitic nematodes. It allows us to gain a deeper insight into the intricate workings of these organisms and their genetic makeup. With this knowledge, we are gaining a fundamental piece in the puzzle of understanding the evolution of these parasites. Moreover, recent transpositions have led to the acquisition of new TE superfamilies, especially Gypsy and Pao retrotransposons, further expanding the diversity of TEs in these nematodes. Significantly, the widely distributed Gypsy superfamily possesses proteases that are exclusively associated with parasitism during nematode-host interactions.These discoveries provide a deeper understanding of the TE landscape within plant-parasitic nematodes.

Phylogeny, character evolution and historical biogeography of Scurrulinae (Loranthaceae): new insights into the circumscription of the genus Taxillus

BackgroundExploring the relationship between parasitic plants and answering taxonomic questions is still challenging. The subtribe Scurrulinae (Loranthaceae), which has a wide distribution in Asia and Africa, provides an excellent example to illuminate this scenario. Using a comprehensive taxon sampling of the subtribe, this study focuses on infer the phylogenetic relationships within Scurrulinae, investigate the phylogeny and biogeography of the subtribe, and establish a phylogenetically-based classification incorporating both molecular and morphological evidence. We conducted phylogenetic, historical biogeography, and ancestral character state reconstruction analyses of Scurrulinae based on the sequences of six DNA regions from 89 individuals to represent all five tribes of the Loranthaceae and the dataset from eleven morphological characters.ResultsThe results strongly support the non-monophyletic of Scurrulinae, with Phyllodesmis recognized as a separate genus from its allies Taxillus and Scurrula based on the results from molecular data and morphological character reconstruction. The mistletoe Scurrulinae originated in Asia during the Oligocene. Scurrulinae was inferred to have been widespread in Asia but did not disperse to other areas. The African species of Taxillus, T. wiensii, was confirmed to have originated in Africa from African Loranthaceae ca. 17 Ma, and evolved independently from Asian members of Taxillus.ConclusionsThis study based on comprehensive taxon sampling of the subtribe Scurrulinae, strongly supports the relationship between genera. The taxonomic treatment for Phyllodesmis was provided. The historical biogeography of mistletoe Scurrulinae was determined with origin in Asia during the Oligocene. Taxillus and Scurrula diverged during the climatic optimum in the middle Miocene. Taxillus wiensii originated in Africa from African Loranthaceae, and is an independent lineage from the Asian species of Taxillus. Diversification of Scurrulinae and the development of endemic species in Asia may have been supported by the fast-changing climate, including cooling, drying, and the progressive uplift of the high mountains in central Asia, especially during the late Pliocene and Pleistocene.

Comparative and phylogenetic analyses of Loranthaceae plastomes provide insights into the evolutionary trajectories of plastome degradation in hemiparasitic plants

BackgroundThe lifestyle transition from autotrophy to heterotrophy often leads to extensive degradation of plastomes in parasitic plants, while the evolutionary trajectories of plastome degradation associated with parasitism in hemiparasitic plants remain poorly understood. In this study, phylogeny-oriented comparative analyses were conducted to investigate whether obligate Loranthaceae stem-parasites experienced higher degrees of plastome degradation than closely related facultative root-parasites and to explore the potential evolutionary events that triggered the ‘domino effect’ in plastome degradation of hemiparasitic plants.ResultsThrough phylogeny-oriented comparative analyses, the results indicate that Loranthaceae hemiparasites have undergone varying degrees of plastome degradation as they evolved towards a heterotrophic lifestyle. Compared to closely related facultative root-parasites, all obligate stem-parasites exhibited an elevated degree plastome degradation, characterized by increased downsizing, gene loss, and pseudogenization, thereby providing empirical evidence supporting the theoretical expectation that evolution from facultative parasitism to obligate parasitism may result in a higher degree of plastome degradation in hemiparasites. Along with infra-familial divergence in Loranthaceae, several lineage-specific gene loss/pseudogenization events occurred at deep nodes, whereas further independent gene loss/pseudogenization events were observed in shallow branches.ConclusionsThe findings suggest that in addition to the increasing levels of nutritional reliance on host plants, cladogenesis can be considered as another pivotal evolutionary event triggering the ‘domino effect’ in plastome degradation of hemiparasitic plants. These findings provide new insights into the evolutionary trajectory of plastome degradation in hemiparasitic plants.

STUDY OF ACUTE AND SUB-ACUTE TOXICITY OF A MEDICATION BASED ON SPIDER VENOM EXTRACT

Homeopathy is a regulatory therapy. The effectiveness of homeopathic therapy does not depend on the dose of the drug, but on the frequency of its repetitions. The composition of homeopathic preparations includes a wide range of natural and synthetic active substances: minerals; chemical substances; substances of plant origin; microorganisms, including fungi, bacteria, viruses, and plant parasites; substances of animal origin; and human materials, which may include tissues, secretions, hormones, and genetically homogeneous cell lines. One such substance is an extract of spider venom (Tarantul cubensis D6), which remains active in pharmaceutical preparation for a long time. The drug is selectively absorbed in inflamed tissues, differentiating them from healthy cells and suppressing inflammation. The drug is also effective in necrotic and proliferative processes. It is used for the treatment of panaritium in the initial stage, skin ulcers, necrobacillosis, and necrosis of the soft tissues of the animal. Any materials of animal or human origin are potentially dangerous for human and animal health, as they may contain toxic or pathogenic substances. Therefore, the study of the acute and subacute toxicity of spider venom extract is one of the stages of establishing the toxicological parameters of the drug. The use of the drug in a therapeutic dose caused an increase in animal body weight, hemoglobin concentration, number of leukocytes, erythrocytes, hematocrit value, average erythrocyte volume (MCV), average hemoglobin content in erythrocytes (МСН), average concentration of hemoglobin in erythrocytes (МСНС), number of platelets, and AST activity against the background of a slight decrease in total protein content, creatinine, urea, and ALT activity. The use of the drug in a 10-fold therapeutic dose caused an increase in animal body weight, creatinine, urea, ALT, and AST activity against the background of a decrease in the concentration of hemoglobin, the number of leukocytes and erythrocytes, the value of hematocrit, the average volume of erythrocytes (MCV), the average content of hemoglobin in erythrocytes (МСН), the average concentration of hemoglobin in erythrocytes (МСНС), the number of platelets, and the content of total protein.

Unraveling the Therapeutic Potential of Miracle Plant ‘Aftimoon’ in Disease Prevention and Treatment: A Comprehensive Review

Aftimoon (Cuscuta reflexa), a member of Convolvulaceae family is a miraculous parasitic plant with a rich history of utilization in traditional medicine. It has been extensively employed in the Unani treatments all over the world, particularly in the Indian subcontinent, to treat and prevent a variety of illness. Over the years, numerous research findings have documented its diverse therapeutic effects including antioxidant, anti-inflammatory, anticancer, hepatoprotective, and neuroprotective activities. It is utilized as a single medication (mufrad) in powder, mixture, and decoction form and as compound formulations (murakkab) to treat a variety of ailments, which includes hepatitis, palpitations, varicose veins, mental ailments such as epilepsy and depression as well as dermatological conditions such as vitiligo and pityriasis. A number of biologically active compounds with therapeutic potential have been recognized and isolated from this wonder plant which includes amarbelin, sterol glycosides, cuscutalin, bergenin, and others. The synergistic actions of its constituents contribute to its multifaceted healing properties. This review explores the therapeutic potential of Aftimoon, shedding light on its pharmacological properties, traditional uses, and emerging research. By synthesizing traditional knowledge with modern scientific insights, this review aims to illuminate the diversified healing properties of C.reflexa and inspire further research and foster its integration into mainstream healthcare practices. Keywords: Aftimoon; Cuscuta reflexa; Therapeutic potential; Unani medicines

2D and 3D visualization of herbaceous plant–plant contact zones using high‐resolution X‐ray computed tomography (HRXCT)

Societal Impact StatementParasitic plants that deprive crops of water and nutrients are an increasingly concerning food security issue, affecting the livelihood of millions of subsistence, small‐ and mid‐scale farmers. An in‐depth understanding of parasite–host interactions is required to develop species‐specific and ecologically sustainable parasite management methods. The non‐invasive visualization of herbaceous contact zones, applicable to diverse parasite–host pathosystems presented in this study, brings methodological advance to the research of biotic interactions between crops and plant parasites belonging to the most devastating parasitic plant family (Orobanchaceae). This work also provides first insights into how the parasites' feeding organ displaces host tissue beyond the direct parasite–host interface.SummaryHigh‐resolution X‐ray computed tomography (HRXCT) enables sectioning‐free two‐dimensional imaging of biological structures and reconstruction of three‐dimensional objects. Although its application is common in many areas of biomedicine and despite its flexibility regarding resolution levels, the technology remains underutilized in the plant sciences. Here, we explored HRXCT for the study of parasitic plant–plant interactions by developing protocols to access soft‐tissue host–parasite contact zones at cell‐level resolution. We tested various sample preparation methods and contrast stains for their efficiency to improve the imaging of haustorium samples. In doing so, we achieved cellular resolution with the visible cellular organization of haustorial structures, especially of the vascular system. Fresh stained and dehydrated sample preparation of soft haustoria enables the highest spatial resolution with fine‐cellular discrimination of haustorium versus host cells. Application of cell‐level resolved HRXCT to five pathosystems: Alectra‐cowpea, Phelipanche‐tomato, Phtheirospermum‐tomato, Rhamphicarpa‐tomato, and Striga‐sorghum highlighted a life history‐specific organization and uncovered an as yet undescribed internal displacement of host tissue at parasite–host interfaces. Following image‐based training, our HRXCT approach could invoke AI‐based cell recognition for automated parasite cell–host cell differentiation. Superseding extensive microsectioning for 3D imaging, the newly established HRXCT protocol for 2D‐ and 3D‐visualization of herbaceous plant–plant contact zones and the first insights gained from it, is useful for mid‐throughput, comparative studies of parasitic plant–host interactions.

Parasitic success of the pathogenic plant Phelipanche ramosa (L.) Pomel. (Orobanchaceae) differs in some re‐infected versus naïve tomato cultivars

AbstractPlants are exposed to infection and predation by organisms from most kingdoms of life, including their own. Layers of molecular defence mechanisms have evolved to limit damage and disease from microbial and insect pathogens, and plants can also defend themselves against attack by members of their own kingdom. These so‐called parasitic plants attach to and take up nutrients from a host plant. It is not yet known whether parasites belonging to the plant kingdom can elicit a systemic defence response in their hosts, to which they have much more in common molecularly than viruses and fungi. To gain insight as to whether previous infection reduces the susceptibility of a host, we used two successive rounds of infection of the same host plants with the holoparasitic plant Phelipanche ramosa (‘broomrape,’ Orobanchaceae). We tested seven cultivars of tomato, and found that the ‘Moneymaker’ cultivar was re‐infested at a lower rate than its naïve counterpart and, if pre‐infested, supported fewer parasites than other cultivars. We collected tissue for RNA sequencing at the host–parasite interface of two cultivars, ‘Moneymaker’ and ‘Zuckertraube’, the latter of which showed no difference in susceptibility upon reinfection. These data revealed tomato cultivar‐specific transcriptional profiles in the parasite, including the upregulation of several peroxidase genes in parasites infecting ‘Moneymaker’, compared to ‘Zuckertraube’. Furthermore, we detected the upregulation of lignin biosynthesis genes in ‘Moneymaker’ tomato plants when they were pre‐infected with the holoparasitic plant. Together, our data suggest that some tomato cultivars may be naturally able to build up defences against parasitic plant infection. This could be relevant for agriculture, in that cuttings or other forms of vegetative propagation of pre‐infected tomato plants can prime crops to withstand field infestations more effectively.

A fungi hotspot deep in the ocean: explaining the presence of Gjaerumia minor in equatorial Pacific bathypelagic waters

A plant parasite associated with the white haze disease in apples, the Basidiomycota Gjaerumia minor, has been found in most samples of the global bathypelagic ocean. An analysis of environmental 18S rDNA sequences on 12 vertical profiles of the Malaspina 2010 expedition shows that the relative abundance of this cultured species increases with depth while its distribution is remarkably different between the deep waters of the Pacific and Atlantic oceans, being present in higher concentrations in the former. This is evident from sequence analysis and a microscopic survey with a species-specific newly designed TSA-FISH probe. Several hints point to the hypothesis that G. minor is transported to the deep ocean attached to particles, and the absence of G. minor in bathypelagic Atlantic waters could then be explained by the absence of this organism in surface waters of the equatorial Atlantic. The good correlation of G. minor biomass with Apparent Oxygen Utilization, recalcitrant carbon and free-living prokaryotic biomass in South Pacific waters, together with the identification of the observed cells as yeasts and not as resting spores (teliospores), point to the possibility that once arrived at deep layers this species keeps on growing and thriving.

The role of small RNAs in resistant melon cultivar against Phelipanche aegyptiaca parasitization.

Bidirectional trans-kingdom RNA silencing, a pivotal factor in plant-pathogen interactions, remains less explored in plant host-parasite dynamics. Here, using small RNA sequencing in melon root systems, we investigated microRNA (miRNA) expression variation in resistant and susceptible cultivars pre-and post-infection by the parasitic plant, broomrape. This approach revealed 979 known miRNAs and 110 novel miRNAs across 110 families. When comparing susceptible (F0) and resistant (R0) melon lines with broomrape infection (F25 and R25), 39 significantly differentially expressed miRNAs were observed in F25 vs. F0, 35 in R25 vs. R0, and 5 in R25 vs. F25. Notably, two miRNAs consistently exhibited differential expression across all comparisons, targeting genes linked to plant disease resistance. This suggests their pivotal role in melon's defense against broomrape. The target genes of these miRNAs were confirmed via degradome sequencing and validated by qRT-PCR, ensuring reliable sequencing outcomes. GO and KEGG analyses shed light on the molecular functions and pathways of these differential miRNAs. Furthermore, our study unveiled four trans-kingdom miRNAs, forming a foundation for exploring melon's resistance to broomrape.

Understanding life cycle of parasitic weed Phelipanche ramosa infesting Brassica juncea in India: new host species and seed coat structure

ABSTRACT Broomrape (Phelipanche ramosa) is an obligate root parasitic plant that is known to infest many important crops. It is emerging as a serious biotic threat for Brassica juncea cultivation in India. There is very limited information available about broomrape species and its infestation in B. juncea. Hence, the present study encompassed a comprehensive five-year field survey spanning from 2018 to 2023 of 47 different B. juncea fields in the states of Rajasthan and Haryana in India. The level of broomrape infestation varied from season to season and field to field. In the B. juncea fields, broomrape with blue/violet color corolla, along with occasionally white color type were also noticed. The hairy anther, corolla shape and use of mitochondrial DNA-specific molecular markers revealed that both these broomrape types belong to Phelipanche ramosa. Scanning electron microscopy (SEM) analysis showed that P. ramosa seeds have varying shapes and seed coat have fibrillar periclinal cell wall. In addition to all the known host species for P. ramosa till date, we also identified a new host, a wild Brassicaceae weed species; Lepidium didymum in Haryana. The presence of an alternative weed host may help P. ramosa survive even in the absence of major crop host species. Overall, the present study revealed some insights into the P. ramosa-B. juncea host-parasite complex and its effect on B. juncea which could be further investigated in more detail.

Chromosome-level genome assembly of Pedicularis kansuensis illuminates genome evolution of facultative parasitic plant.

Parasitic plants have a heterotrophic lifestyle, in which they withdraw all or part of their nutrients from their host through the haustorium. Despite the release of many draft genomes of parasitic plants, the genome evolution related to the parasitism feature of facultative parasites remains largely unknown. In this study, we present a high-quality chromosomal-level genome assembly for the facultative parasite Pedicularis kansuensis (Orobanchaceae), which invades both legume and grass host species in degraded grasslands on the Qinghai-Tibet Plateau. This species has the largest genome size compared with other parasitic species, and expansions of long terminal repeat retrotransposons accounting for 62.37% of the assembly greatly contributed to the genome size expansion of this species. A total of 42,782 genes were annotated, and the patterns of gene loss in P. kansuensis differed from other parasitic species. We also found many mobile mRNAs between P. kansuensis and one of its host species, but these mobile mRNAs could not compensate for the functional losses of missing genes in P. kansuensis. In addition, we identified nine horizontal gene transfer (HGT) events from rosids and monocots, as well as one single-gene duplication events from HGT genes, which differ distinctly from that of other parasitic species. Furthermore, we found evidence for HGT through transferring genomic fragments from phylogenetically remote host species. Taken together, these findings provide genomic insights into the evolution of facultative parasites and broaden our understanding of the diversified genome evolution in parasitic plants and the molecular mechanisms of plant parasitism.

Nematode community structure in sugarcane fields under continuous vinasse fertigation

Sugarcane vinasse is a residue from ethanol production, which has high content of nutrients and organic matter, improving chemical, physical and biological changes in the soil. This study evaluated nematode community structure, food web, metabolic footprint, and soil quality in sugarcane fields under continuous vinasse fertigation. Soil samples were collected from four sugarcane fields in Pernambuco State, Brazil, under continuous vinasse fertigation for nematode identification at the genus (plant parasites) and family (free-living) level, physical and chemical analyses of the soil. Nine genera of plant-parasitic nematodes and five families of free-living nematodes were identified in sugarcane fields. Plant-parasitic nematodes were dominant, except in the field with five years of continuous vinasse application. The genera Mesocriconema, Meloidogyne, Helicotylenchus and Pratylenchus were frequent in all fields. Predators and fungivores nematodes were few abundant, although, according to the soil food web, all sugarcane fields were low to moderately disturbed environments. A positive correlation was observed between the microbial respiration and Rhabdtidae in fields with five years of vinasse application, and between the electrical conductivity of the soil and Meloidogyne in fields without vinasse application. We highlight those alterations in the structure and composition of the nematode community, and soil characteristics that can occur due to vinasse fertigation in sugarcane fields.

Role of external nutrient supply in establishing host-sandalwood interactions

Sandalwood is semi root parasite plants that required host plant for water and nutrients. So, for successful sandalwood plantation, it is important to study the host parasite interactions and role of external supply of water and nutrient, both theoretically and practically. To find out long-term host species for sandalwood, a randomized block design experiment was conducted to identify the suitability of host and effect of externally supplied nutrient medium on sandalwood planted with five selected host (Alternanthera sp., Azadirachata indica, Dalbergia sissoo, Melia dubia, and Aquilaria malaccensis) and without host species. After 180 days of establishment, morphological traits were recorded and noted that plant height, collar diameter and root length was higher in Dalbergia sissoo and Melia dubia as compared to other host species. Significant enhancement in morphological traits was recorded with external supply of Hoagland nutrient medium. Similarly, higher shoot biomass and root biomass were noted in Dalbergia sissoo and Melia dubia under control as well as with externally supplied nutrient medium. While, maximum haustorial connections were formed with Dalbergia sissoo over studied host species. On the other hand physiological trait such as chlorophyll content was abundant in sandalwood grown with Dalbergia sissoo. Physiological parameters such photosynthetic rate, transpiration rate were higher in sandalwood cultivated with Dalbergia sissoo. Macronutrient such as nitrogen, phosphorus and potassium content was also higher in Dalbergia sissoo and Melia dubia. The results revealed that sandalwood could be grown successfully with Dalbergia sissoo and external supply of nutrients might enhance the growth and physiology of sandalwood.

Fusarium fujikuroi as a potential biocontrol agent of the parasitic weed Phelipanche aegyptiaca in tomato

AbstractPhelipanche aegyptiaca (Pers.) Pomel, commonly known as Egyptian broomrape, is an obligate root parasite, infesting solanaceous crops mainly in Mediterranean countries. Certain antagonistic fungi could be effectively used as a biocontrol agent for this parasitic plant. In this study, three fungal isolates (F1, F2 and F3) were obtained from P. aegyptiaca seeds covered with mycelium. The isolates were characterized based on morphological features and ITS and TEF sequence analysis. They were classified as belonging to Fusarium fujikuroi with a sequence similarity of 99.80% and 100%, respectively. The pathogenicity of the isolates on P. aegyptiaca and tomato were determined. In a P. aegyptiaca seed assay, all isolates allowed seed germination with delayed radicle development. Disease severity among the isolates ranged from 40%–70% on the basis of radicle necrotic area. The F1 isolate caused more than 40% disease on the spiders and tubercles in a polyethylene bag assay. The average of the total of spider and tubercle mortality caused by the F1 isolate was 63.5% at 9 days after inoculation. Moreover, the F1 isolate was considered non‐pathogen on tomato with 6.66% disease severity after root inoculation. To the best of our knowledge, this is the first report of F. fujikuroi on P. aegyptiaca seed. Pending further development, the F1 isolate could have potential for the biocontrol of P. aegyptiaca in the future.

Soil nematode metacommunities in different land covers: Assessment at the local and regional scales.

The metacommunity theory enhances our understanding of how ecological processes regulate community structure. Yet, unraveling the complexities of soil nematode metacommunity structures across various spatial scales and determining the factors influencing these patterns remains challenging. Therefore, we conducted an investigation on soil nematode metacommunities spanning from north to south in the Northeastern China. Our aim was to test whether nematode metacommunities were structured by different drivers under three land covers (i.e., farmland, grassland and woodland) at the local and regional scales. The results revealed that the Clementsian, Gleasonian and their quasi-structures of soil nematodes collectively accounted for 93% of the variation across the three land covers at the local and regional scales. These structures suggest that the soil nematode metacommunities in the Northeast China responded to fluctuations in environmental gradients. At the local scale, metacommunities were primarily shaped by biological interactions. At the regional scale, environmental heterogeneity, dispersal limitation and biological interactions all contributed to nematode metacommunities. Meanwhile, biological interactions under three land covers were represented within different trophic groups, with plant parasites predominant in farmlands and bacterivores in grasslands and woodlands. In conclusion, the metacommunity structures of soil nematodes remain stable at different spatial scales and land covers. Biological interactions are widespread among nematodes regardless of changes in spatial scales and land covers. This study reveals the importance of nematode sensitivity to the environment and biological interactions in shaping the nematode metacommunities, potentially enhancing our understanding of the spatial patterns of nematode metacommunities.