A series of standardized medium formulations differing in carbon and nitrogen sources was evaluated for use in taxonomic differentiation of Penicillium species. Two media containing glucose as the carbon source and either nitrate or ammonium as the nitrogen source yielded optimal growth for most Penicillium species, and were, therefore, selected as reference media for evaluating growth parameters on other medium formulations. The nitrogen status of the medium was altered either by the addition of phosphinothricin, a potent inhibitor of ammonium assimilation via the glutamine synthetase pathway, or by using urea, phenylalanine, proline, creatine, glycinebetaine, choline, or bovine serum albumin as a substituted nitrogen source. Sucrose, sorbitol, mannitol, cellobiose, cellulose, palmitic acid, and para hydroxybenzoate were used as substitutes for glucose. The examination of colony area, hyphal density and changes in the color of pH indicators on day 7 yielded a set of 64 characters with a high degree of variation among Penicillium strains. The ability to assimilate various carbon and nitrogen sources appears to follow taxonomic lines in Penicillium. Furthermore, the acidification of the growth medium on a given nutrient source is a strong taxonomic trait in Penicillium. A sorting protocol has been developed to allow a broadly based discontinuous separation of taxa by segregating growth and acidification ratings into four broad categories, assigning an alphabetical coding to each category, and a staggered grouping of categories into two group with intermediate ratings included in both. The resolution power of the sorting scheme is demonstrated by the separation of 222 strains belonging to six test species P. atramentosum, P. citreonigrum, P. commune, P. corylophilum, P. oxalicum, and P. spinulosum from a dataset of 1860 Penicillium strains, including 1472 isolates from house dust samples, 199 isolates isolates from outdoor habitats, 121 ex-type strains and 68 named strains from various culture collections. For each species, only a fraction of character groups included in the sorting protocol was required for separating matching isolates. In addition a total of 180 strains were found to match one of the six test species except for a single character difference. These results support the use of physiological media both for species and for infraspecific differentiation of Penicillium taxa. The biochemical basis of species differentiation on the given physiological media is discussed.
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