The paper presents the results of testing the possibility of using empirical orthogonal functions to develop algorithms for estimating the concentration of chlorophyll a and suspended matter, the biomass of cyanobacteria in the eastern part of the Gulf of Finland. To develop the algorithms, we used an array of data from field measurements of the subsurface radiance reflectance in 2012–2014, carried out simultaneously with the determination of bio-optical characteristics. It turned out that in the case of the concentration of chlorophyll a and suspended matter, such algorithms can be created not only using the hyperspectral radiance reflectance, but also for the spectral channels of satellite color scanners MODIS and OLCI. An estimation of the cyanobacteria biomass with the empirical orthogonal functions method is not applicable in the case of using satellite channels. A study of the possibility of the most prone to atmospheric correction errors shortwave MODIS channels exclusion was also made. It turned out that the concentration of chlorophyll a is more sensitive to such exclusion than the concentration of suspended matter. Validation on a MODIS data showed that empirical orthogonal functions algorithms give results no worse than regression ones.
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