Niche Shifts Research Articles

Intercontinental dispersal and niche fidelity drive 50 million years of global diversification in Vertigo land snails

AbstractAimWe aimed to understand how biogeographical processes and moisture niche ecology contributed to the spatio‐temporal diversification dynamics in the land snail genus Vertigo.LocationGlobal (North America, Europe, Asia, Africa).Time PeriodCenozoic era.Major Taxa StudiedMinute terrestrial snails of the genus Vertigo.MethodsWe reconstructed a time‐calibrated phylogeny of 94 Vertigo taxa (~85% of all known extant species) based on mitochondrial and nuclear DNA data. Leveraging this phylogeny with distributional and ecological data from >7000 populations, we performed biogeographic and ecological modelling to investigate evolutionary mechanisms of global Vertigo diversification.ResultsVertigo has diversified since the Early Eocene, ca. 47.6 Ma (95% HPD = 46.0–52.7), with its six subgenera originating from the Late Eocene (30.2–48.7 Ma) to the Early Miocene (13.3–23.0 Ma). Species diversity accumulated linearly, with a slight increase 35–30 and 25–20 Ma, coinciding with the emergence of most subgenera and northern hemisphere cooling, respectively. Biogeographic modelling indicated that most diversification events occurred in sympatry (no range modification), but that rare founder events drove global diversification. Soil moisture conditions, a major variable defining Vertigo niches, displayed significant phylogenetic signal, but varied less among subgenera relative to within. Shifts in biogeographical ranges and moisture niches (or the absence thereof) were significantly associated at macroevolutionary scales, with most niche shifts upon sympatric cladogenesis and hardly any upon founder‐event speciation.Main ConclusionsOur results indicate that ecological shifts in soil moisture niches occasionally drove cladogenesis in sympatry and anagenetic range extensions, but that long‐distance dispersal was mainly successful in the absence of such shifts. A combination of neutral (founder events and drift) and selective mechanisms (adaptive habitat shifts) has determined the macroevolutionary success of Vertigo. Our results imply that species with high niche fidelity or fewer opportunities for long‐distance dispersal will be more vulnerable to future anthropogenic stressors.

Convergent niche shifts of endangered parrots (genus Amazona) during successful establishment in urban southern California

AbstractAimIntroduced species offer insight on whether and how organisms can shift their ecological niches during translocation. The genus Amazona offers a clear test case, where sister species Red‐crowned (A. viridigenalis) and Lilac‐crowned Parrots (A. finschi) have established breeding populations in southern California following introduction via the pet trade from Mexico where they do not coexist. After establishment in the 1980s, introduced population sizes have increased, with mixed species flocks found throughout urban Los Angeles. Here, we investigate the differences between the environmental conditions of the native and introduced ranges of these now co‐occurring species.LocationSouthern California and Mexico.MethodsUsing environmental data on climate and habitat from their native and introduced ranges, we tested whether Red‐crowned and Lilac‐crowned Parrots have divergent realized niches between their native ranges, and whether each species has significantly shifted its realized niche to inhabit urban southern California. We also analysed data from Texas and Florida introductions of Red‐crowned Parrots for comparative analysis.ResultsThere are significant differences in the native‐range niches of both parrot species, but a convergence into a novel, shared environmental niche into urban southern California, characterized by colder temperatures, less tree cover and lower rainfall. Texas and Florida Red‐crowned Parrots also show evidence for niche shifts with varying levels of niche conservatism through the establishment of somewhat different realized niches.Main ConclusionsDespite significant niche shifts, introduced parrots are thriving, suggesting a broad fundamental niche and an ability to exploit urban resources. Unique niche shifts in different U.S. introductions indicate that Amazona parrots can adapt to diverse environmental conditions, with cities offering a resource niche and the timing of introduction playing a crucial role. Cities can potentially serve as refugia for threatened parrot species, but the risk of hybridization between species emphasizes the need for ongoing monitoring and genetic investigations.

Exploring the Climatic Niche Evolution of the Genus Falco (Aves: Falconidae) in Europe.

By integrating species distribution modeling techniques, phylogenetic comparative methods, and climatic data, we analyzed how European falcon climatic niches have changed over evolutionary time in order to understand their tempo and mode of evolution and gain phylogenetic insights related to the ecological context of falcon evolution. For this purpose, we tested the relative contributions of niche conservatism, convergent evolution, and divergent evolution in the evolutionary history of this group of species in Europe. The occupation of climatic niche spaces by falcon species in Europe was not similar, considering that their climatic niche evolution was characterized by heterotachy, especially after ca. 4 Mya. Our results indicate that convergent evolution and niche divergence played an important role in the evolutionary history of these species, with no significant evidence of closely related species retaining their fundamental niche over time (phylogenetic niche conservatism). In most analyses, less closely related falcon species occupied similar climatic environments. We found that speciation in the European genus Falco was influenced by climatic niche differentiation, more prevalent in the last 4 million years, with the main climatic niche shifts occurring between closely related falcon species.

Invading plants remain undetected in a lag phase while they explore suitable climates.

Successful alien species may experience a period of quiescence, known as the lag phase, before becoming invasive and widespread. The existence of lags introduces severe uncertainty in risk analyses of aliens as the present state of species is a poor predictor of future distributions, invasion success and impact. Predicting a species' ability to invade and pose negative impacts requires a quantitative understanding of the commonality and magnitude of lags, environmental factors and mechanisms likely to terminate lag. Using herbarium and climate data, we analysed over 5,700 time series (species × regions) in 3,505 naturalized plant species from nine regions in temperate and tropical climates to quantify lags and test whether there have been shifts in the species' climatic space during the transition from the lag phase to the expansion phase. Lags were identified in 35% of the assessed invasion events. We detected phylogenetic signals for lag phases in temperate climate regions and that annual self-fertilizing species were less likely to experience lags. Where lags existed, they had an average length of 40 years and a maximum of 320 years. Lengthy lags (>100 years) were more likely to occur in perennial plants and less frequent in self-pollinating species. For 98% of the species with a lag phase, the climate spaces sampled during the lag period differed from those in the expansion phase based on the assessment of centroid shifts or degree of climate space overlap. Our results highlight the importance of functional traits for the onset of the expansion phase and suggest that climate discovery may play a role in terminating the lag phase. However, other possibilities, such as sampling issues and climate niche shifts, cannot be ruled out.

Records of urban occurrences expand estimates of the climate niches in tree species

AbstractAimQuantifying a species' climate niche is often the first step to determining potential sensitivity to climate change. This process typically relies on native occurrence records, assuming that these reflect the breadth of a species' climatic requirements. Yet, many species survive in non‐native regions with climates beyond their native range. Identifying their characteristics could help to better elucidate responses to climate change. Here, we use an extensive data set of urban street tree and native range records for 566 tree species to assess differences between species native and urban climate niches and whether niche differences are predictable given characteristics of species native ranges.LocationGlobal.Time Period1970–2020.Major Taxa StudiedTree species.MethodsMultivariate niche estimations were undertaken using eight climate variables. Calculations included the size of species' urban and native niches, overlap and direction of shift. Relationships between niches and native range attributes (temperature and precipitation breadth, range size, Köppen Geiger subclasses occupied) were calculated using multiple linear regression.Results83% of tree species studied had significantly larger urban niches compared to native niches. Species with narrow geographic ranges demonstrated greater mismatch between their two niches, and the direction of niche shift was associated with their native range Köppen Geiger zone. For example, species native to the wet tropics tend to be planted in cooler, drier urban spaces; those native to cold regions are planted in warmer urban spaces.Main ConclusionNative range occurrences may poorly reflect the breadth of climatic conditions a species can tolerate—particularly for species with narrow geographic ranges. For some species, Köppen Geiger zones may be a useful proxy to help understand sensitivity to climate change. Accounting for possible plasticity in tree species to climate can improve our understanding of their sensitivity and adaptive capacity to climate change.

Differences in spatial niche of terrestrial mammals when facing extreme snowfall: the case in east Asian forests

BackgroundRecent climate changes have produced extreme climate events. This study focused on extreme snowfall and intended to discuss the vulnerability of temperate mammals against it through interspecies comparisons of spatial niches in northern Japan. We constructed niche models for seven non-hibernating species through wide-scaled snow tracking on skis, whose total survey length was 1144 km.ResultsWe detected a low correlation (rs < 0.4) between most pairs of species niches, indicating that most species possessed different overwintering tactics. A morphological advantage in locomotion cost on snow did not always expand niche breadth. In contrast, a spatial niche could respond to (1) drastic landscape change by a diminishing understory due to snow, possibly leading to changes in predator-prey interactions, and (2) the mass of cold air, affecting thermoregulatory cost and food accessibility. When extraordinary snowfall occurred, the nonarboreal species with larger body sizes could niche shift, whereas the smaller-sized or semi-arboreal mammals did not. In addition, compared to omnivores, herbivores were prone to severe restriction of niche breadth due to a reduction in food accessibility under extreme climates.ConclusionsDietary habits and body size could determine the redundancy of niche width, which may govern robustness/vulnerability to extreme snowfall events.

Divergence in cold tolerance promotes niche differentiation between diploid and polyploid kiwifruits along an altitudinal gradient in Southwest China

Polyploidization is hypothesized to improve the freezing resistance of plants in cold regions. However, adaptive strategies and key physiological mechanisms involved in the freezing resistant ability of polyploids remain unclear. In Actinidia chinensis (kiwifruits), the tetraploids and hexaploids occupy higher altitude habitats with colder climates than the diploids, providing a study system to investigate mechanisms responsible for differentiation in freezing resistance between cytotypes. We characterized environmental conditions of their natural distribution areas, and measured leaf‐level traits of cold damages and water relations at typical sites of each cytotype along an altitudinal gradient. Polyploids showed lower semi‐lethal temperature (LT50) than ice nucleation temperature (INT), reflecting a tolerance strategy to cope with freezing events in the plateau regions. More negative turgor loss points and larger cell elastic modulus of polyploids could help to alleviate damages from freezing‐induced cell dehydration, thus strengthening their tolerance to lower subzero temperatures (lower LT50). The increased supercooling capacity of polyploids (lower INT) might correlate with less extracellular ice formation due to lower osmotic potential at full turgor, apoplastic water fraction and tissue capacitance. Our study uncovers a greater cold tolerance in polyploid kiwifruits than diploids, and suggests the potential linkage between freezing tolerance and water relations. Taken together, such a divergence in stress resistance may underlie the niche shift of polyploid plants towards harsh environments.

Shift in Tissue-Specific Immune Niches and CD137 Expression in Tuberculoma of Pembrolizumab-Treated Nasopharyngeal Carcinoma Patients.

The use of immune checkpoint inhibitors (ICIs) in cancer treatment has shown promise but can also have unintended consequences, such as reactivating latent tuberculosis (TB). To develop treatments that address ICIs-related adverse events, it is essential to understand cellular heterogeneity across healthy and pathological tissues. We performed cross-tissue multiplexed staining analysis on samples from two patients with TB reactivation during pembrolizumab treatment for metastatic nasopharyngeal carcinoma. CD8+ T cells, rather than CD4+ T cells, accumulated preferentially in the tuberculoma and were associated with increased production of IFNγ and expression of CD137. Additionally, CD137 enrichment played a role in the spatial organization of the tuberculoma, with specific interaction limited to spatial proximal cells between IFNγ+ CD137+ CD8+ T cells and IL12+ CD137+ type-1 macrophages. This unique feature was not observed in non-tumoral or tumoral tissues. Our analysis of public transcriptomic datasets supported the notion that this cellular interaction was more prominent in patients with durable ICI responses compared to those with non-ICI-related TB. We suggest that shifts towards CD137-rich immune niches are correlated with both off-target immune-related adverse events and anti-tumor efficacy. Targeting the tumor microenvironment through conditional activation of anti-CD137 signaling in combination with ICIs can modulate the reactivity of T cells and macrophages for localized tumor killing without the potential off-target immune-related risks associated with ICIs alone.

Sustained use of marine subsidies promotes niche expansion in a wild felid

The use of marine subsidies by terrestrial predators can facilitate substantial transfer of nutrients between marine and terrestrial ecosystems. Marine resource subsidies may have profound effects on predator ecology, influencing population and niche dynamics. Expanding niches of top consumers can impact ecosystem resilience and interspecific interactions, affecting predator-prey dynamics and competition. We investigate the occurrence, importance, and impact of marine resources on trophic ecology and niche dynamics in a highly generalist predator, the caracal (Caracal caracal), on the Cape Peninsula, South Africa. Caracals have flexible diets, feeding across a wide range of terrestrial and aquatic prey. We use carbon and nitrogen stable isotope analysis of fur samples (n = 75) to understand trophic position and niche shifts in coastal and inland foragers, as well as the implications of a diet rich in marine resources. We found significant differences in isotope signatures between these groups, with higher δ13C (P < 0.05) and δ15N values (P < 0.01) in coastal foragers. Isotope mixing models reveal that these elevated signatures were due to non-terrestrial food subsidies, where approximately a third of coastal foraging caracal diet comprised marine prey. The addition of marine prey species to diet increased both the trophic level and isotope niche size of coastal foraging caracals, with potential impacts on prey populations and competition. Our results suggest that marine prey are an important dietary resource for coastal foraging caracals, where seabirds, including two endangered species, are a major component of their diet. However, there are likely risks associated with these resource benefits, as routine consumption of seabirds is linked with higher pollutant burdens, particularly metals. Increased encounters between this terrestrial predator and seabirds may be a result of increased mainland colonies due to changes in habitat availability and the highly opportunistic and generalist foraging behaviour of a native predator.

The edaphic niche of ploidy-different grasses in the light of the coarse-grained data modeling and direct soil sampling

In the framework of polyploidization, a widely discussed issue is the possibility of niche shift. Numerous studies have investigated niche differentiation among cytotypes, with some confirming distinct differences, while others finding them to be similar. Within this research project, we focus on the case of the cytotypes (2x and 4x) of Festuca amethystina L. and the closely related F. tatrae (Czakó) Degen (2x). We hypothesize that a significant change in the edaphic niche of tetraploids could be a factor that enabled them to occupy new lowland areas inaccessible to diploids which are characteristic of mountain habitats.The edaphic niche differentiation between Festuca amethystina cytotypes was determined by studying the niches’ breadths using PCA-based modeling and separate analyses of particular soil features. The modeling was based on SoilGridsTMdata, and the conclusions were compared with the results of the direct soil studies. Such a research model makes it possible to determine to what extent the data coming from the mentioned database allows for the indication of niche differentiation.Coarse-grained modeling based on SoilGridsTM data indicated a significant change in the edaphic requirements of the tetraploids, as well as pointed to the niche shift towards a higher content of sand, lower carbon and nitrogen content, and lower pH. The direct soil sampling and laboratory tests confirmed these trends and provided a more detailed understanding of the cytotypes requirements. However, no statistically significant differences were observed between cytotypes concerning soil pH, the majority of base cations, available forms of phosphorus and potassium, and the results of CHN elemental analysis. While the direct soil sampling did not reveal significant differences, the analyses based on the niche modeling, considering a wide background area in Central Europe (using SoilGrids data), captured significant variations. This comprehensive approach allowed us to uncover a highly logical pattern of niche shift, which indicates that tetraploids are predisposed to extend their geographical range to post-glacial lowland areas.Additionally, Festuca amethystina tetraploids display a wider edaphic niche breadth than their closely related and hypothetical ancestor Festuca tatrae. The decision to include the latter reduced the probability that the obtained result of the significant increase of the tetraploid edaphic niche was a simple result of hybridization.

The interplay between climatic niche evolution, polyploidy and reproductive traits explains plant speciation in the Mediterranean Basin: a case study in Centaurium (Gentianaceae).

Speciation and diversification patterns in angiosperms are frequently shaped by niche evolution. Centaurium Hill is a Mediterranean genus with ca. 25 species, of which 60% are polyploids (tetra- and hexaploids), distributed mainly in the Mediterranean Basin and in areas with temperate and arid climates of Asia, Europe, North-Central Africa and North America. The evolutionary history of this genus has been studied using morphological, biogeographical and molecular approaches, but its climatic niche characterization and its relation with genome evolution (chromosome number and ploidy level) has not been addressed yet. Thus, this study aims to identify the role of the evolution of climatic niche, ploidy level, life cycle and floral traits in the diversification of Centaurium. Climatic niche characterization involved estimating present climate preferences using quantitative data and reconstructing ancestral niches to evaluate climatic niche shifts. The evolution of climatic niche towards selective optima determined by ploidy level (three ploidy levels) and different binary traits (polyploidy, floral size, floral display, herkogamy and life cycle) was addressed under the Ornstein-Uhlenbeck model. Chromosome number evolution was inferred using the ChromoSSE model, testing if changes are clado- or anagenetic. Chromosome number evolution and its link with cladogenesis, life cycle and floral traits was modeled on the phylogeny. The reconstruction of the ancestral niches shows that Centaurium originated in a mild climate and diversified to both humid and cold as well as to dry and warmer climates. Niche conservatism was estimated in the climatic niche of the ancestors, while the climatic niche of the current taxa experienced transitions from their ancestors' niche. Besides, the evolution of climatic niche towards multiple selective optima determined by the studied traits was supported, life cycle optima receiving the highest support. The reconstruction of chromosome number transitions shows that the rate of speciation process resulting from chromosomal changes (chromosomal cladogenesis) is similar to that of non-chromosomal cladogenesis. Additionally, dependent evolution of floral size, floral display and herkogamy with chromosome number variation was supported. In conclusion, polyploidization is a crucial process in the Mediterranean region that assisted speciation and diversification into new areas with different climates, entailing niche shifts and evolution of reproductive strategies.

Climatic niche shift after range expansion of Eustachys (Poaceae).

Eustachys presents lower diversity in the Old World than in the Neotropics and it occurs disjunctly between main tropical regions. This qualifies Eustachys as a good model to test whether lineages expand their niches during the process of range expansion. We performed ancestral range reconstruction, compared environmental spaces of the different geographic areas and assessed bioclimatic trait evolution. Ancestral range reconstruction indicated that most speciation in Eustachys occurred in the South America. Ancestral climatic niches of the New World are different from those of African and Australasia lineages. Our results show that Eustachys experienced niche expansion when it reached the New World. Evolutionary history of Eustachys illustrates how the range expansion promoted climatic niche shifts, which could drive unbalanced species richness of the genus among different tropical regions.

Species‐specific foraging behavior and diets of stream salmonids: An implication for negative impacts on native charr by nonnative trout in Japanese mountain streams

AbstractSalmonids have been introduced globally as a food source and recreational fishing target. In Japan, brown trout (Salmo trutta) and brook trout (Salvelinus fontinalis) were introduced in the 19th century and have since spread. In many headwater streams, native white‐spotted charr (Salvelinus leucomaenis) are thought to be experiencing negative impacts from these species. The current study examined foraging behavior, microhabitat use, and diet overlap of these three species in Kamikochi, Nagano Prefecture: one of Japan's premier mountain areas. In Kamikochi, many spring‐fed headwater streams are currently dominated by these invasive salmonids and white‐spotted charr have declined drastically over the last half century. Underwater video analysis revealed that while total foraging rates and foraging modes were similar between the three species, brook trout and white‐spotted charr foraged benthically more frequently than brown trout. Microhabitat water depth and flow velocity were similar between species, and fish size had a positive effect on water depth and flow velocity in all three species. Diet analysis indicated that brook trout and white‐spotted charr diets were nearly identical, comprised primary of aquatic invertebrates, while brown trout preyed on a mix of terrestrial and aquatic invertebrates, as well as amphibians and fish. These results indicate that in Kamikochi, the decline of white‐spotted charr is likely most influenced by direct competition with brook trout for prey resources. However, brown trout likely also predate on juvenile white‐spotted charr, while also possibly causing a foraging niche shift of white‐spotted charr, and have ecosystem‐level impacts due to predation on terrestrial prey.

Global distribution of the invasive apple snail Pomacea canaliculata: analyzing possible shifts in climatic niche between native and invaded ranges and future spread

Global distribution of the invasive apple snail Pomacea canaliculata: analyzing possible shifts in climatic niche between native and invaded ranges and future spread

Isotopic trajectories and interspecific niche partitioning in tropical pelagic sharks

Pelagic sharks are top predators with key role in the structure and functioning of ocean ecosystems. However, little is known on their assemblage-wide trophic ecology. Specifically, fundamental data gaps exist over how trophic niches of pelagic sharks diverge both intra- and inter-specifically. To address this question, multi-tissue stable isotope analysis is a powerful tool that enables the quantification of trophic dynamics of mobile predators throughout ontogeny and across species. In this study, we utilized stable isotope analysis of carbon (δ13C) and nitrogen (δ15N) of tissues with varying turnover rates (muscle, red blood cells, liver, and plasma) to assess individual niche trajectories (i.e., temporal isotopic variation), population isotopic niche width, and isotopic niche overlap across five shark species (n = 155) in the eastern tropical Pacific Ocean: silky (Carcharhinus falciformis), blue (Prionace glauca), smooth hammerhead (Sphyrna zygaena), bigeye thresher (Alopias superciliosus), and the pelagic thresher shark (A. pelagicus). Overall, the relationship between isotopic niche trajectory length and body size was not significant, indicating that the magnitude of ontogenetic dietary variation does not increase in larger individuals. Pelagic sharks had variable feeding strategies over short-long time scales, likely reflecting species-specific responses to seasonality of prey availability and foraging location. Observed interspecific differences in isotope values indicate a degree of trophic niche partitioning across the five pelagic shark species. These data suggest ontogenetic niche shifts in pelagic sharks potentially differ from more coastal tied species and reveal species-specific ecological roles, but further studies on the diet and fine-scale habitat use are required to verify these results.

Niche shifts undermine the prediction performance of species distribution models: estimating potentially suitable areas for Myriophyllum aquaticum at the global scale

Invasive alien species (IAS) can undergo niche shifts upon establishment in novel environments that differ from their native ranges. The validity of species distribution models (SDMs) depends on the underlying assumption of niche conservatism that IAS can only successfully establish populations in environments that closely resemble their native regions. This has led us to examine how ecologists can use SDMs to predict potentially suitable areas for invasive alien species in the context of niche shifts. Here, we compared the niches of Myriophyllum aquaticum in its native and invasive ranges to quantify the shifts that occurred during its global invasion using the centroid shift, overlap, unfilling, and expansion (COUE) framework. We also aimed to investigate the effects of niche shift on the prediction performance of SDMs. The SDMs were calibrated using data from three different sources: the native range, the invasive range, and a combination of both. The study examined how these different data sources influenced the accuracy of the SDM predictions. The findings indicated the niche expansion between the invasive and native ranges. The invasive (based on the occurrence data of invasive ranges) and global (based on the occurrence data of global ranges) models underestimated the potentially suitable areas (PSAs) of M. aquaticum in the Southern Hemisphere. The native model (based on the occurrence data of native ranges) underestimated the PSAs of M. aquaticum in the Northern Hemisphere. We combined the results of the invasive and native range models to estimate the global PSAs of M. aquaticum, addressing the predictive limitations of a single model in a complementary form. The PSAs of M. aquaticum were predominantly distributed in eastern Asia, western Europe, southern North America, southern South America, and southern Oceania and expanded into higher latitudes under future climate scenarios. Our study has applied a simple yet effective method for predicting the global PSAs of M. aquaticum given niche shifts, which confirmed the observations of the previous studies and provided a theoretical basis for the early warning, prevention and control of M. aquaticum.

Predator-driven behavioural shifts in a common lizard shape resource-flow from marine to terrestrial ecosystems.

Foraging decisions shape the structure of food webs. Therefore, a behavioural shift in a single species can potentially modify resource-flow dynamics of entire ecosystems. To examine this, we conducted a field experiment to assess foraging niche dynamics of semi-arboreal brown anole lizards in the presence/absence of predatory ground-dwelling curly-tailed lizards in a replicated set of island ecosystems. One year after experimental translocation, brown anoles exposed to these predators had drastically increased perch height and reduced consumption of marine-derived food resources. This foraging niche shift altered marine-to-terrestrial resource-flow dynamics and persisted in the diets of the first-generation offspring. Furthermore, female lizards that displayed more risk-taking behaviours consumed more marine prey on islands with predators present. Our results show how predator-driven rapid behavioural shifts can alter food-web connectivity between oceanic and terrestrial ecosystems and underscore the importance of studying behaviour-mediated niche shifts to understand ecosystem functioning in rapidly changing environments.

The phylogenetic reconstruction of the Neotropical cycad genus Ceratozamia (Zamiaceae) reveals disparate patterns of niche evolution

The cycad genus Ceratozamia comprises 40 species from Mexico, Guatemala, Belize, and Honduras, where cycads occur throughout climatically varied montane habitats. Ceratozamia has the potential to reveal the history and processes of species diversification across diverse Neotropical habitats in this region. However, the species relationships within Ceratozamia and the ecological trends during its evolution remain unclear. Here, we aimed to clarify the phylogenetic relationships, the timing of clade and species divergences, and the niche evolution throughout the phylogenetic history of Ceratozamia. Genome-wide DNA sequences were obtained with MIG-seq, and multiple data-filtering steps were used to optimize the dataset used to construct an ultrametric species tree. Divergence times among branches and ancestral niches were estimated. The niche variation among species was evaluated, summarized into two principal components, and their ancestral states were reconstructed to test whether niche shifts among branches can be explained by random processes, under a Brownian Motion model. Ceratozamia comprises three main clades, and most species relationships within the clades were resolved. Ceratozamia has diversified since the Oligocene, with major branching events occurring during the Miocene. This timing is consistent with fossil evidence, the timing estimated for other Neotropical plant groups, and the major geological events that shaped the topographic and climatic variation in Mexico. Patterns of niche evolution in the genus do not accord with the Brownian Motion model. Rather, non-random evolution with shifts towards more seasonal environments at high latitudes, or shifts towards humid or dry environments at low latitudes explain the diversification of Ceratozamia. We present a comprehensive phylogenetic reconstruction for Ceratozamia and identify for the first time the environmental factors involved in clade and species diversification within the genus. This study alleviates the controversies regarding the species relationships in the genus and provides the first evidence that latitude-associated environmental factors may influence processes of niche evolution in cycads.

Temporal shifts in the marine feeding of individual Atlantic salmon inferred from scale isotope ratios.

Given the limited information on prey use during the marine residency period for Atlantic salmon, scales were collected from salmon at return to the River Namsen (Norway) for spawning after 1 year at sea, and scale material from the first and second summer marine feeding periods was analysed using stable isotope methods to understand dynamics of their trophic ecology. As the salmon increased in size from the first to second summer, they reduced their feeding niche and specialised more (narrowed the δ13C range) and increased their dependency on higher tropic level (δ15N) prey, likely fish. Changes in δ13C indicated a consistent pattern of movement towards the north and west between summer feeding periods. Hence, salmon during their first year at sea may have a migration route roughly resembling that of previous spawners, as inferred from earlier tagging studies. Feeding conditions and nutrient composition during the last summer at sea, i.e. in the months before returning to the river for spawning, impacted final body size and within-season timing of return. Fish undergoing the largest trophic niche shift (δ13C and δ15N combined) between summer feeding periods, returned earliest. The earliest returning fish had the fastest specific growth rates at sea. Hence, salmon encountering abundant high-quality fish food during the marine migration, particularly during the last months, may reach a size and energetic state whereby it is better to return early to a safer environment in freshwater than risk being eaten by a big predator at sea. Both trophic status (δ15N), resource use (δ13C) and growth rates were significantly correlated between feeding periods. Nutrient composition during the first summer at sea did not impact the fish body length after the following winter, but growth conditions during the first summer evidenced carry-over effects from the first to the second summer of feeding.

Spatiotemporal variation in the size structure of the chub mackerel, Scomber japonicus, over half a century in the East Asian Marginal Seas

The size and age structure of a population are crucial aspects for understanding population dynamics. Many marine fish species have experienced long-term reductions in size and age owing to overfishing and/or global warming; however, these aspects remain unexplored. The present study elucidated the spatiotemporal variations in chub mackerel size and age structure based on the operational reports of large- and medium-sized Japanese purse seine fisheries for nearly half a century. Our results revealed size- and age-dependent segregation at a fine spatial scale, which may indicate ontogenetic niche shifts in response to thermal and feeding conditions or intercohort competition. On a long-term temporal scale, a significant reduction in size and age was observed in the East China Sea, whereas a contrasting increase in size and age was observed in the northern Sea of Japan. This may indicate that large fish have greater sensitivity to global warming and shift their distribution more rapidly northward than do small fish. In addition, the reduction in size and age during the spawning season in the East China Sea may result in a bias towards younger spawners, potentially rendering population dynamics more unstable. This study highlights the importance of investigating the spatiotemporal variation in the size structure of exploited fish stocks.