Neutral Anion Research Articles

Structure and Kinetics of Organic Acid Radicals Formed in Reaction with •OH Radicals.

The study investigated •OH-derived radicals from certain organic acids employed in nuclear fuel processing and separation using EPR spectroscopy and quantum chemistry methods. Hydroxyl radicals were generated through a Fenton-like reaction within the EPR resonator under both acidic and basic conditions, allowing for the detection of neutral and radical anions, respectively. The spectral assignment and analysis were conducted using a combination of literature data and quantum chemical calculations employing DFT theory with B3LYP or LPBE functionals and the L2a_3 basis set. The reaction of the •OH radical with lactic and glycolic acids yielded primary C-centered radicals through hydrogen abstraction from these acids. In contrast, the •OH radical exclusively generated secondary radicals from oxalic acid, whereas for citric acid, it resulted in both primary and secondary species induced by decarboxylation. The EPR spectrum of acetohydroxamic acid, upon reaction with the •OH radical, displayed a complex pattern featuring primary •N-type and N-O•-type radicals. The decay pathways of the generated radicals were primarily attributed to radical-radical reactions, with the extracted reaction rate constants generally falling within the typical range observed for such reactions. The EPR parameters calculated for potential radicals using B3LYP and LPBE functionals with L2a_3 basis set demonstrated good accuracy for neutral radicals, albeit requiring minor adjustments for radical anions.

Biomimetic Charge‐Neutral Anion Receptors for Reversible Binding and Release of Highly Hydrated Phosphate in Water

AbstractControl of phosphate capture and release is vital in environmental, biological, and pharmaceutical contexts. However, the binding of trivalent phosphate (PO43−) in water is exceptionally difficult due to its high hydration energy. Based on the anion coordination chemistry of phosphate, in this study, four charge‐neutral tripodal hexaurea receptors (L1–L4), which were equipped with morpholine and polyethylene glycol terminal groups to enhance their solubility in water, were synthesized to enable the pH‐triggered phosphate binding and release in aqueous solutions. Encouragingly, the receptors were found to bind PO43− anion in a 1 : 1 ratio via hydrogen bonds in 100 % water solutions, with L1 exhibiting the highest binding constant (1.2×103 M−1). These represent the first neutral anion ligands to bind phosphate in 100 % water and demonstrate the potential for phosphate capture and release in water through pH‐triggered mechanisms, mimicking native phosphate binding proteins. Furthermore, L1 can also bind multiple bioavailable phosphate species, which may serve as model systems for probing and modulating phosphate homeostasis in biological and biomedical researches.

Biomimetic Charge-Neutral Anion Receptors for Reversible Binding and Release of Highly Hydrated Phosphate in Water.

Control of phosphate capture and release is vital in environmental, biological, and pharmaceutical contexts. However, the binding of trivalent phosphate (PO4 3-) in water is exceptionally difficult due to its high hydration energy. Based on the anion coordination chemistry of phosphate, in this study, four charge-neutral tripodal hexaurea receptors (L1-L4), which were equipped with morpholine and polyethylene glycol terminal groups to enhance their solubility in water, were synthesized to enable the pH-triggered phosphate binding and release in aqueous solutions. Encouragingly, the receptors were found to bind PO4 3- anion in a 1 : 1 ratio via hydrogen bonds in 100 % water solutions, with L1 exhibiting the highest binding constant (1.2×103 M-1). These represent the first neutral anion ligands to bind phosphate in 100 % water and demonstrate the potential for phosphate capture and release in water through pH-triggered mechanisms, mimicking native phosphate binding proteins. Furthermore, L1 can also bind multiple bioavailable phosphate species, which may serve as model systems for probing and modulating phosphate homeostasis in biological and biomedical researches.

Environmental fate of phenobarbital in water: Homogeneous and non-homogeneous environment

In aqueous environments, phenobarbital (PB) undergoes degradation mediated by hydroxyl radicals (HO·) and sulfate radicals (SO4·−). In this study, a theoretical approach was used to investigate the oxidation of phenobarbital triggered by HO·/SO4·− in different dissociated forms of PB at different pH values, as well as the adsorption mechanism of phenobarbital on the silica surface and the non-homogeneous reaction with HO·. Our study confirms three primary reaction models for PB degradation: radical addition, hydrogen abstraction, and single electron transfer reactions. Thermodynamic and kinetic calculations show that the reaction of PB with HO· is the main degradation pathway compared to the reaction of SO4−. At the C5 and C6 positions, HO·-addition and H-abstraction from H6 and H7 are competitive mechanisms. However, in non-homogeneous environments, HO·-addition at C5 becomes the dominant pathway. Our work identifies the primary products of these degradation reactions. At a temperature of 298 K, the total rate constants for the degradation reactions of HO· with PB neutral molecules and anions were determined to be 2.06 M−1 s−1 and 4.11 × 107 M−1 s−1, respectively. In a non-homogeneous reaction with HO·, the total rate constant is 4.47 × 1010 M−1 s−1. Despite degradation, the majority of these products retain their potential to impact aquatic organisms. In particular, compounds such as 5-ethyl-5-hydroxypyrimidine-2,4,6(1H,3H,5H)-trione, 5-(1-hydroxyethyl)-5-phenylpyrimidine-2,4,6(1H,3H,5H)-trione, and 5-acetyl-5-phenylpyrimidine-2,4,6(1H,3H,5H)-trione have a greater toxic effect on green algae. The findings underscore the need for future research to consider the environmental implications and ecotoxicity of PB. Such consideration is crucial for a comprehensive understanding of the long-term environmental impact of pharmaceutical residues in aquatic ecosystems.

Photo-switchable Collectors for the Flotation of Lithium Aluminate for the Recycling of the Critical Raw Material Lithium.

Flotation of the mineral lithium aluminate by application of the natural product punicine from Punica granatum and some derivatives as collectors is examined. Punicines, 1-(2',5'-dihydroxyphenyl)-pyridinium compounds, are switchable molecules whose properties can be changed reversibly. They exist as cations, neutral mesomeric betaines, anions, and dianions depending on the pH. In light, they form radicals. Five punicine derivatives were prepared which possess β-methyl, β-chlorine, γ-tert.-butyl, and γ-acetyl groups attached to the pyridinium ring, and a pyrogallol derivative. On the other hand, LiAlO2 reacts with water to give species such as LiAl2(OH)7 on its surface. Flotations were performed applying the punicines in daylight (3000 lux), in darkness (<40 lux) and under UV-irradiation (4500 lux, 390-400 nm). The pH of the suspension, the collector's concentration, the conditioning time as well as the flotation time were varied. The recovery rates strongly depend on these parameters. For example, the recovery rate of lithium aluminate was increased by 116 % on changing the lighting condition from daylight to darkness, when the pyrogallol derivative of punicine was applied. UV, FTIR, TGA and zeta potential measurements as well as DFT calculations were performed in order to gain insight into the chemistry of punicines on the surface of LiAlO2 and LiAl2(OH)7 in water which influence the flotation's results.

Highly Stable Self-Regenerating Organic Multi-Redox Systems derived from Bicyclic (Alkyl)(amino)carbenes (BICAACs).

An extended class of organic multi-redox systems was derived from bicyclic(alkyl)amino carbenes (BICAACs). The highly-conjugated system undergoes a total of 4 redox events spanning a 1.8 V redox range. These organic compounds exhibited four different stable redox states (dication, radical cation, neutral and radical anion), and all of them were characterized either by single crystal X-ray study and/or various spectroscopic studies. Three of the four redox states are stable to air and moisture. The availability of stable multiple redox states demonstrated promise towards their efficacy in the symmetric H-cell charge/discharge cycling. Among various redox states, the dication/neutral state works efficiently and continuously for 1500 cycles in 2e- charge/discharge process outside glovebox in commercially available DMF with minimum capacity loss (retaining nearly 90 % Coulombic efficiency). Surprisingly, the efficiency of the redox cycle was retained even if the system was exposed to air for 30 days when it slowly regenerated to the initial deep blue radical cation, and it exhibited another 100 charge/discharge cycles with a minimal capacity loss. Such a stable H-cell cycling ability is not well known among organic molecule-based systems.

Lithium aluminate flotation by pH- and light-switchable collectors based on the natural product punicine.

Derivatives of the natural product punicine [1-(2',5'-dihydroxyphenyl)pyridinium chloride] were developed as switchable collectors for the flotation of lithium-containing engineered artifical minerals (EnAMs). These EnAMs are e.g. formed by pyrometallurgical processing of end-of-life lithium-ion batteries. Depending on the pH value and the lighting conditions, punicines exist in water as cations, two different electrostatically neutral mesomeric betaines, anionic tripoles, radical cations or radical anions. The radical species form by photochemically induced disproportionation reactions. We prepared punicine derivatives introducing alkyl chains in the pyridinium moiety (4-methyl, 4-ethyl, 4-octyl and 4-undecanyl) to install hydrophobic groups and examined the recovery rates of the flotation of lithium aluminate (LiAlO2). We varied the lighting conditions (darkness, daylight, LED irradiation at λ = 390-400 nm) and the pH value, the collector's and frother's concentration, and the flotation time. With our collectors, recovery rates of lithium aluminate up to 90% were accomplished when the flotation was conducted in Hallimond tubes exposed to daylight at pH 11 in water.

Current Design of Mixed-Ligand Complexes of Magnesium(II): Synthesis, Crystal Structure, Thermal Properties and Biological Activity against Mycolicibacterium Smegmatis and Bacillus Kochii

The interaction of Mg2+ with 2-furoic acid (HFur) and oligopyridines, depending on the synthesis conditions, leads to the formation of mixed-ligand complexes [Mg(H2O)4(phen)]·2HFur·phen·H2O (1), [Mg(NO3)2(phen)2] (2) and [Mg3(Fur)6(bpy)2]·3CH3CN (3); these structures were determined with an SC X-ray analysis. According to the X-ray diffraction data, in complex 1, obtained in ambient conditions, the magnesium cation coordinated four water molecules and one phenanthroline fragment, while in complexes 2 and 3 (synthesized in an inert atmosphere), the ligand environment of the complexing agent was represented by neutral oligopyridine molecules and acid anions. The thermal behavior of 1 and 2 was studied using a simultaneous thermal analysis (STA). The in vitro biological activity of complexes 1–3 was studied in relation to the non-pathogenic Mycolicibacterium smegmatis and the virulent strain Mycobacterium tuberculosis H37Rv.

Neutral MOF Anion Receptor: Radical-Promoted Precise Anion Recognition.

Precise ion recognition plays a key role in the anionic decontamination in water. However, the established anionic recognition based on neutral or cationic anion receptor is still restricted by the inherent limitation, such as narrow application scope in organic solvent rather than water for neutral anion receptor and poor selectivity due to non-directional electrostatic interaction for cationic anion receptor. Herein, for the first time, a neutral metal-organic framework (MOF) anion receptor is shown, enabling precise anion recognition, for example, the presence of a variety of 1000-fold competitive anions does not affect the selective adsorption of the target anion at all. A radical-dominating anion-recognition mechanism is proposed for rationalizing the efficacy of the neutral MOF.

Dynamic Metalloporphyrin-Based [2]Rotaxane Molecular Shuttles Stimulated by Neutral Lewis Base and Anion Coordination.

A series of dynamic metalloporphyrin [2]rotaxane molecular shuttles comprising of bis-functionalised Zn(II) porphyrin axle and pyridyl functionalised macrocycle components are prepared in high yield via active metal template synthetic methodology. Extensive variable temperature 1 H NMR and quantitative UV-Vis spectroscopic titration studies demonstrate dynamic macrocycle translocation is governed by an inter-component co-ordination interaction between the macrocycle pyridyl and axle Zn(II) metalloporphyrin, which serves to bias a 'resting state' co-conformation. The dynamic shuttling behaviour of the interlocked structures is dramatically inhibited by the addition of a neutral Lewis base such as pyridine, but can also be tuned via post-synthetic rotaxane demetallation of the porphyrin axle core to give free-base, or upon subsequent metallation, Ni(II) [2]rotaxane analogues. Importantly, the Lewis acidic Zn(II) porphyrin axle component is also capable of coordinating anions which induces mechanical bond shuttling behaviour resulting in a novel optical sensing response.

Co-Sensitization Effects of Indoline and Carbazole Dyes in Solar Cells and Their Neutral-Anion Equilibrium in Solution.

Co-sensitization of two or more light-absorbing compounds on a TiO2 surface has recently become one of the most successful strategies in the development of dye-sensitized solar cells (DSSCs). The specific structure of the dyes for DSSCs implies that they can partly exist in anionic forms in popular solvents used for sensitization. Our study concerns the above two issues being analyzed in detail using the example of the popular carbazole (MK2) and indoline (D205) dyes, studied by stationary absorption and emission, femtosecond transient absorption (in complete cells and in the solutions), current-voltage measurements, DFT and TD-DFT theoretical calculations. After the addition of D205 to DSSC with MK2, the fill factor of the cells was improved, and the electron recombination between TiO2 and the dyes was blocked (observed on sub-nanosecond time scales). Thus, the active co-adsorbent can take the role of the typically used passive additive, like chenodeoxycholic acid. Evidence of the concentration-dependent equilibrium between neutral and anionic forms of dyes with different lifetimes was found in acetonitrile solutions (the best for sensitization), while in ethanol solution the dominant form was the anion (worse for sensitization). Our findings should help in better understanding the operation and optimization of DSSC.

Unfurling Anion-π Interactions Involving Graphynes.

Ever since the inception of anion-π interactions, their nature and functional relevance have intrigued researchers. We address the twin challenge of elucidation of the role of extended conjugation and design of all-carbon neutral anion receptors by computations on the anion-π complexes of the halide ions with graphynes. Leveraging on the extended π-conjugation effects, we unfurl the functional relevance of graphynes as anion receptors using descriptors such as electrostatic potential, quadrupole moments, molecular polarizabilities and binding energies. Further, employing natural energy decomposition analysis, we assert that anion-π interactions are not merely dominated by electrostatic interactions. The polarization components do indeed play a crucial role in governing the binding of the anions to the graphynes.

Noncovalent Interactions Involving Group 6 in Biological Systems: The Case of Molybdopterin and Tungstopterin Cofactors.

In this study we propose to coin the term Wolfium bond (WfB) to refer to a net attractive force (noncovalent interaction) between any element of group 6 and electron donor atoms (neutral molecules or anions) and to differentiate it from a coordination bond (metal‐ligand interaction). We provide evidence of the existence of this interaction by inspecting the X‐ray crystal structure of proteins containing Molybdopterin and Tungstopterin cofactors from the Protein Data Bank (PDB). The plausible biological role of the interaction as well as its physical nature (antibonding Wf‐Ligand orbital involved) are also analyzed by means of ab initio calculations (RI‐MP2/def2‐TZVP level of theory), Atoms in Molecules (AIM), Natural Bond Orbital (NBO) and Noncovalent Interactions plot (NCIplot) analyses.

π-Pimer, π-Dimer, π-Trimer, and 1D π-Stacks in a Series of Benzene Triimide Radical Anions: Substituent-Modulated π Interactions and Physical Properties in Crystalline State

π-Pimer, π-Dimer, π-Trimer, and 1D π-Stacks in a Series of Benzene Triimide Radical Anions: Substituent-Modulated π Interactions and Physical Properties in Crystalline State

Comprehensive quantum chemical calculations and molecular docking analysis of uracil mustard by first principle

Uracil mustard belongs to the nitrogen mustard family and is primarily used in anticancer drugs. The research that follows, investigates many quantum chemical features such as the computation of global minimum energies with no negative wavenumber values using the Density Functional Theory (DFT) with Becke three functional and 6-311G (d, p)/6–311++G (d, p) basis sets. All the vibrational modes have been calibrated and justified in comparison to their experimental counterparts. Mustard's polarizability and hyperpolarizability components, Natural Bond Analysis (NBO), electronic properties, Fukui function analysis, various global parameters, Quantum Theory of Atoms In Molecule (QTAIM) analysis, ADMET analysis, and docking analysis have all been investigated using the same theory and basis sets, indicating its biochemical significance. The biological activity of the molecule is reported by using PASS software. The Full fitness score and binding affinity parameters are utilized to determine the binding strength with 6cq3 protein. The acidity of the title molecule is calculated in water solvent by polarizable continuum model (PCM) solvent effects (estimated in water). The HOMO, LUMO, and MESP plots are used to explore the nature of binding and surfaces. The Fukui functions are computed using Mulliken atomic charges for neutral atoms, cations, and anions. The Ultraviolet–visible (UV–vis) of the molecule is computed employing the TD-DFT method.

Quantifying Acidity in Heterogeneous Systems: Biphasic pKa Values.

Acidities of lipophilic compounds, such as various ligands or catalysts, in systems consisting of an aqueous phase at equilibrium with a water-immiscible phase (lipid bilayers, phase transfer catalysis, sensor membranes, to name just few) are typically approximated by the aqueous pKa values. Our research shows that such approximations can lead to seriously biased estimations of the acidities as the bulk of solvated H+ ions reside in the aqueous phase, while the lipophilic species─both neutral acid and anion─predominantly reside in the organic phase. Therefore, the use of aqueous pKa in such situations is not justified. In this work, we provide a more accurate description of the acidities of acids in such systems by applying the biphasic pKa concept. Biphasic pKa values (pKaow values) of 35 acids of various structures and chemical properties were determined in a 1-octanol:water system. We provide detailed descriptions of the UV-vis and NMR measurement methods. The directly obtained (apparent) pKaow values depend on concentration. Concentration-independent values were obtained by extrapolating the apparent values to zero concentration using a Debye-Hückel model.

Complexes of transition metal carbonyl clusters with tin(II) phthalocyanine in neutral and radical anion states: methods of synthesis, structures and properties.

Coordination of tin(II) phthalocyanine to transition metal carbonyl clusters in neutral {SnII(Pc2-)}0 or radical anion {SnII(Pc˙3-)}- states is reported. Direct interaction of Co4(CO)12 with {SnII(Pc2-)}0 yields a crystalline complex {Co4(CO)11·SnII(Pc2-)} (1). There is no charge transfer from the cluster to phthalocyanine in 1, which preserves the diamagnetic Pc2- macrocycle. The Ru3(CO)12 cluster forms complexes with one or two equivalents of {SnII(Pc˙3-)}- to yield crystalline {Cryptand[2.2.2](Na+)}{Ru3(CO)11·SnII(Pc˙3-)}- (2) or {Cryptand[2.2.2](M+)}2{Ru3(CO)10·[SnII(Pc˙3-)]2}2-·4C6H4Cl2 (3) (M+ is K or Cs). Paramagnetic {SnII(Pc˙3-)}- species in 2 are packed in π-stacking [{SnII(Pc˙3-)}-]2 dimers, providing strong antiferromagnetic coupling of spins with exchange interaction J/kB = -19 K. Reduction of Ru3(CO)12, Os3(CO)12 and Ir4(CO)12 clusters by decamethylchromocene (Cp*2Cr) and subsequent oxidation of the reduced species by {SnIVCl2(Pc2-)}0 yield a series of complexes with high-spin Cp*2Cr+ counter cations (S = 3/2): (Cp*2Cr+){Ru3(CO)11·SnII(Pc˙3-)}-·C6H4Cl2 (4), (Cp*2Cr+){Os3(CO)10Cl·SnII(Pc˙3-)}-·C6H4Cl2 (5) and (Cp*2Cr+){Ir4(CO)11·SnII(Pc˙3-)}2- (6). It is seen that reduced clusters are oxidized by SnIV, which is transferred to SnII, whereas the Pc2- macrocycle is reduced to Pc˙3-. In the case of Os3(CO)12, oxidation of the metal atom in the cluster is observed to be accompanied by the formation of Os3(CO)10Cl with one OsI center. Rather weak magnetic coupling is observed between paramagnetic Cp*2Cr+ and {SnII(Pc˙3-)}- species in 4, but this exchange interaction is enhanced in 5 owing to Os3(CO)10Cl clusters with paramagnetic OsI (S = 1/2) also being involved in antiferromagnetic coupling of spins. The formation of {SnII(Pc˙3-)}- with radical trianion Pc˙3- macrocycles in 2-5 is supported by the appearance of new absorption bands in the NIR spectra and essential Nmeso-C bond alternation in Pc (for 3-5). On the whole, this work shows that both diamagnetic {SnII(Pc2-)}0 and paramagnetic {SnII(Pc˙3-)}- ligands substitute carbonyl ligands in the transition metal carbonyl clusters, forming well-soluble paramagnetic solids absorbing light in the visible and NIR ranges.

Orion Bar as a window to the evolution of PAHs

ABSTRACT We investigate the mid-infrared (IR) emission in the Orion Bar photodissociation region (PDR), using archival photometric and spectroscopic observations from the United Kingdom Infrared Telescope (UKIRT), Spitzer, Infrared Space Observatory(ISO), and Stratospheric Observatory for Infrared Astronomy (SOFIA) telescopes. Specifically, we consider flux densities of the emission bands at 3.3, 3.4, 3.6, 6.6, 7.7, and 11.2 $\mu$m in several locations and a spectrum from 3 to 45 $\mu$m in one location. We study the behaviour of band flux ratios, which are sensitive to external conditions, as revealed by their variations with the distance from an ionizing source. Assuming that the mid-IR emission arises mostly from polycyclic aromatic hydrocarbons (PAHs), and that a weak emission feature at 3.4 $\mu$m is related to PAHs with extra hydrogen atoms (H-PAHs), we trace variations of the ratios using a model for PAH evolution. Namely, we estimate how populations of PAHs of different sizes, hydrogenation and ionization states change across the Orion Bar over a time interval approximately equal to its lifetime. The obtained ensembles of PAHs are further used to calculate the corresponding synthetic spectra and band flux densities. The model satisfactorily describes the main features of the ratios I3.6/I11.2, I7.7/I11.2, I7.7/I3.6, and I3.3/I3.4. We conclude that the best coincidence between modelling and observations is achieved if C loss of PAHs is limited by the number of carbon atoms NC = 60, and the band at 3.4 $\mu$m may indeed be attributed to H-PAHs. We confirm that large cations dominate at the surface of the PDR but small neutral PAHs and anions are abundant deeper in the molecular cloud.

Ion Pair Uptake in Ion Gel Devices Based on Organic Mixed Ionic–Electronic Conductors

AbstractIn organic mixed ionic–electronic conductors (OMIECs), it is critical to understand the motion of ions in the electrolyte and OMIEC. Generally, the focus is on the movement of net charge during gating, and the motion of neutral anion–cation pairs is seldom considered. Uptake of mobile ion pairs by the semiconductor before electrochemical gating (passive uptake) can be advantageous as this can improve device speed, and both ions can participate in charge compensation during gating. Here, such passive ion pair uptake in high‐speed solid‐state devices is demonstrated using an ion gel electrolyte. This is compared to a polymerized ionic liquid (PIL) electrolyte to understand how ion pair uptake affects device characteristics. Using X‐ray photoelectron spectroscopy, the passive uptake of ion pairs from the ion gel into the OMIEC is detected, whereas no uptake is observed with a PIL electrolyte. This is corroborated by X‐ray scattering, which reveals morphological changes to the OMIEC from the uptake of ion pairs. With in situ Raman, a reorganization of both anions and cations is then observed during gating. Finally, the speed and retention of OMIEC‐based neuromorphic devices are tuned by controlling the freedom of charge motion in the electrolyte.

A Highly Efficient Neutral Anion Receptor in Polar Environments by Synergy of Anion−π Interactions and Hydrogen Bonding

Herein, it is shown how anion recognition in highly polar solvents by neutral metal-free receptors is feasible when multiple hydrogen bonding and anion-π interactions are suitably combined. A neutral aromatic molecular tweezer functionalized with azo groups is shown to merge these two kinds of interactions in a unique system and its efficiency as an anion catcher in water is evaluated using first-principles quantum methods. Theoretical calculations unequivocally prove the high thermodynamic stability in water of a model anion, bromide, captured within the tweezer's cavity. Thus, static calculations indicate anion-tweezer interaction energies within the range of covalent or ionic bonds and stability constants in water of more than 10 orders of magnitude. First-principles molecular dynamics calculations also corroborate the stability through the time of the anion-tweezer complex in water. It shows that the anion is always found within the tweezer's cavity due to the combination of the tweezer-anion interactions plus a hydrogen bond between the anion and a water molecule that is inside the tweezer's cavity.