Native Yellowstone Cutthroat Trout Research Articles

Onset of climate‐change impact on the renowned Oncorhynchus metapopulation of Yellowstone Lake revealed by Leslie modeling of annual gill‐net catches

AbstractThe native Yellowstone cutthroat trout (Oncorhynchus clarkii bouvieri; YCT) of Yellowstone Lake, Yellowstone National Park, Wyoming, USA, comprise a metapopulation that inhabits an ecologically simple and uniquely pristine environment. A recent study Bayesian fit an age‐structured Leslie model that had a local climate index (total annual mean‐daily air temperatures >0°C at the lake's north shore) as its only driver (regulating age‐0 YCT survival) to data for a key YCT spawning stock (median fish age, 5 years) from 1977 to 1992, before predation from an illegally introduced and growing lake trout (Salvelinus namaycush) population (1994 discovery) measurably affected YCT population dynamics. Results showed the new climate regime that began in the late 1970s had an overarching effect and largely explained declining spawning runs, although a growing predation effect became evident near lake trout discovery and quickly became the major YCT population driver. In the present study, that model was likewise fitted to estimated abundances of age‐5 YCT (~75% mature) that had been annually (also 1977–1992) gill‐netted from Yellowstone Lake and thus characterized the metapopulation. Results showed age‐0 YCT survival declined when a climate index of 1440 was reached and exceeded. Metapopulation recovery to historically high levels requires that the climate index decline to and remain near or below 1440 and—as shown by another recent study—that the lake trout population be reduced to its mid‐1990s levels. The most recent time of evident YCT metapopulation persistence at historically high levels and broadest spatial extent occurred under those simultaneous conditions.

Decomposition Rates of Suppression-Produced Fish Carcasses in a Large, Deep, High-Elevation Lake in North America

The decomposition of vertebrates in lake ecosystems has been largely understudied despite being a vital part of ecosystem processes. Invasive lake trout (Salvelinus namaycush) invaded Yellowstone Lake and caused a decline in the native Yellowstone cutthroat trout (Oncorhynchus clarkii bouvieri) population. To restore Yellowstone cutthroat trout, lake trout were suppressed by gillnetting annually since 1995 and has continued to present, with most carcasses deposited in the profundal zone (>70 m). As a part of suppression management, a fraction of carcasses from gillnetting were ground and placed on littoral spawning sites (causing lake trout embryo mortality via hypoxia). We conducted experiments (2018 and 2019) to determine how carcass state (i.e., whole vs. ground) and location of deposition (i.e., profundal or littoral) affected decomposition rates. Whole carcasses in the depths of Yellowstone Lake decomposed nine times slower (rate of decay, k = −0.0075 day−1; 95% CI = −0.0063–−0.0089) than ground carcasses in the littoral zone (k = −0.0679 day−1; 95% CI = −0.0590–−0.0768). Whole carcasses had a half-life of 91 days while ground carcasses had a half-life of 10 days. We showed that carcass state and location cause a differential decomposition for lake trout carcasses in Yellowstone Lake. Understanding carcass persistence in lakes can inform the management of suppression-produced carcasses in large lakes and provide insight into potential effects of carcass deposition from other sources, such as spawning events or fish kills, on nutrient cycling.

Aerial Application of Organic Pellets Eliminates Lake Trout Recruitment from a Primary Spawning Reef in Yellowstone Lake

AbstractInvasive Lake Trout Salvelinus namaycush in the Yellowstone Lake ecosystem have been gillnetted since 1995 to suppress the population and allow for recovery of native Yellowstone Cutthroat Trout Oncorhynchus clarkii bouvieri. Although gillnetting is effective (Lake Trout population growth rate λ ≤ 0.6 during 2012–2022), the effort only targets free‐swimming, age‐2 and older Lake Trout. We developed a complementary suppression method using organic (soy and wheat) pellets to cause Lake Trout embryo mortality and reduce recruitment from spawning areas. The entire Carrington Island spawning reef (0.5 ha) was aerially treated with 3.56 and 3.00 kg/m2 of pellets in 2019 and 2020, respectively. Pellet decomposition caused dissolved oxygen concentrations to decline to lethal levels at 20 cm depth in the substrate, and pellets mostly dissipated from the reef within 12 d. Lake Trout fry trap CPUE was reduced to zero after ice‐off each spring after the treatments. Prior to the treatments, 71 fry were captured during 58 trap‐nights of effort in 2017–2019. After the treatments, no fry were captured during 273 trap‐nights in 2020 and 2021. Lake Trout CPUE in large‐mesh gill nets set near Carrington Island in September did not decline during 2017–2021 and fry were again trapped on the reef in spring 2022, suggesting that adults were not deterred from spawning there in the years after the pellet treatments. Complementary methods that increase mortality of prerecruits may allow for a reduction in gill‐netting effort and the long‐term costs of maintaining Lake Trout population suppression in Yellowstone Lake. Treatment of spawning areas may improve suppression efficiency for Lake Trout and invasive fish populations elsewhere because entire cohorts are targeted while immobile and temporarily concentrated in relatively small areas.

Invasive predator diet plasticity has implications for native fish conservation and invasive species suppression.

Diet plasticity is a common behavior exhibited by piscivores to sustain predator biomass when preferred prey biomass is reduced. Invasive piscivore diet plasticity could complicate suppression success; thus, understanding invasive predator consumption is insightful to meeting conservation targets. Here, we determine if diet plasticity exists in an invasive apex piscivore and whether plasticity could influence native species recovery benchmarks and invasive species suppression goals. We compared diet and stable isotope signatures of invasive lake trout and native Yellowstone cutthroat trout (cutthroat trout) from Yellowstone Lake, Wyoming, U.S.A. as a function of no, low-, moderate-, and high-lake trout density states. Lake trout exhibited plasticity in relation to their density; consumption of cutthroat trout decreased 5-fold (diet proportion from 0.89 to 0.18) from low- to high-density state. During the high-density state, lake trout switched to amphipods, which were also consumed by cutthroat trout, resulting in high diet overlap (Schoener's index value, D = 0.68) between the species. As suppression reduced lake trout densities (moderate-density state), more cutthroat trout were consumed (proportion of cutthroat trout = 0.42), and diet overlap was released between the species (D = 0.30). A shift in lake trout δ13C signatures from the high- to the moderate-density state also corroborated increased consumption of cutthroat trout and lake trout diet plasticity. Observed declines in lake trout are not commensurate with expected cutthroat trout recovery due to lake trout diet plasticity. The abundance of the native species in need of conservation may take longer to recover due to the diet plasticity of the invasive species. The changes observed in diet, diet overlap, and isotopes associated with predator suppression provides more insight into conservation and suppression dynamics than using predator and prey biomass alone. By understanding these dynamics, we can better prepare conservation programs for potential feedbacks caused by invasive species suppression.

Hybridization decreases native cutthroat trout reproductive fitness.

Examining natural selection in wild populations is challenging, but crucial to understanding many ecological and evolutionary processes. Additionally, in hybridizing populations, natural selection may be an important determinant of the eventual outcome of hybridization. We characterized several components of relative fitness in hybridizing populations of Yellowstone cutthroat trout and rainbow trout in an effort to better understand the prolonged persistence of both parental species despite predictions of extirpation. Thousands of genomic loci enabled precise quantification of hybrid status in adult and subsequent juvenile generations; a subset of those data also identified parent-offspring relationships. We used linear models and simulations to assess the effects of ancestry on reproductive output and mate choice decisions. We found a relatively low number of late-stage (F3+) hybrids and an excess of F2 juveniles relative to the adult generation in one location, which suggests the presence of hybrid breakdown decreasing the fitness of F2+ hybrids later in life. Assessments of reproductive output showed that Yellowstone cutthroat trout are more likely to successfully reproduce and produce slightly more offspring than their rainbow trout and hybrid counterparts. Mate choice appeared to be largely random, though we did find statistical support for slight female preference for males of similar ancestry. Together, these results show that native Yellowstone cutthroat trout are able to outperform rainbow trout in terms of reproduction and suggest that management action to exclude rainbow trout from spawning locations may bolster the now-rare Yellowstone cutthroat trout.

Temporal segregation in spawning between native Yellowstone cutthroat trout and introduced rainbow trout

AbstractHybridisation with introduced taxa poses a threat to native fish populations. Mechanisms of reproductive isolation can limit or prevent hybridisation between closely related species. Understanding how these mechanisms interact between the same species across geographically distinct occurrences of secondary contact, and how regional factors influence them, can inform our understanding of hybridisation as a threat and management actions to mitigate this threat. We used data collected on adult fish migration timing and approximate emergence timing of subsequent juvenile fish paired with genomic data to assess whether temporal isolation in the timing of spawning exists between Yellowstone cutthroat trout, rainbow trout and hybrids in the North Fork Shoshone River drainage in northwest Wyoming. We found evidence that Yellowstone cutthroat trout spawn, on average, two to four weeks later than rainbow trout and hybrids and two environmental covariates related to water temperature and discharge were associated with differences in spawning migration timing. Despite statistical support for Yellowstone cutthroat trout spawning later, disproportionately high numbers of rainbow trout and hybrids, paired with extended spawning seasons, lead to substantial overlap between all genotypes. Our results provide further evidence of temporal segregation in the timing of spawning as a mechanism of reproductive isolation between closely related species, but substantial spawning overlap suggests temporal segregation alone will not be enough to curtail hybridisation in conservation populations.

Spatial and Temporal Distribution and Habitat Selection of Native Yellowstone Cutthroat Trout and Nonnative Utah Chub

AbstractHenrys Lake, Idaho, is a renowned trophy trout fishery that faces an uncertain future following the establishment of Utah Chub (UTC) Gila atraria. Utah Chub were first documented in the lake in 1993 and have become abundant over the past two decades. Little is known about the ecology of UTC, but they typically have negative effects on salmonids in systems where they have been introduced. We sought to fill knowledge gaps in UTC ecology and provide insight on potential interactions with Yellowstone Cutthroat Trout (YCT) Oncorhynchus clarkii bouvieri. Ninety‐four YCT and 95 UTC were radio‐tagged in spring 2019 and 2020 to better understand potential interactions between YCT and UTC in Henrys Lake. Fish were located via mobile tracking and fixed receivers from June to December 2019 and 2020. In June of both years, YCT and UTC were concentrated in nearshore habitats. As water temperatures increased, UTC were documented in deeper water (mean ± SD = 3.6 ± 1.4 m) and YCT became more concentrated in areas with cold water (e.g., mouths of tributaries, in‐lake springs). In July and August, large congregations of UTC were observed. Yellowstone Cutthroat Trout were detected in tributaries from June to August, but no UTC were detected in the tributaries. By late fall (November–December), YCT were located along the shoreline and UTC were detected in the middle of the lake. Both YCT and UTC were observed in areas with dense vegetation. Macrophytes likely provided a food source for UTC and cover from predators for both species. Locations of YCT were negatively related to warm water temperatures, whereas UTC were positively associated with warm water temperatures. Results from this research fill knowledge gaps in UTC and YCT interactions as well as provide valuable insight on the ecology of UTC and adfluvial Cutthroat Trout populations. Furthermore, distribution patterns and habitat selectivity of YCT and UTC in Henrys Lake can be used to inform management decisions for fishery improvement and YCT conservation.

Response of nutrient limitation to invasive fish suppression: How carcasses and analog pellets alter periphyton

The native Yellowstone Cutthroat Trout (Oncorhynchus clarkii bouvieri Jordan and Gilbert, 1883) population in Yellowstone Lake, Yellowstone National Park, Wyoming, USA, is in decline because of competition from the introduced, invasive Lake Trout (Salvelinus namaycush Walbaum in Artedi, 1792). Gillnetting is used to suppress adult Lake Trout; however, methods are being developed to suppress embryos, including adding Lake Trout carcasses and carcass-analog pellets to spawning sites. Decomposing carcasses and analog pellets cause decreased dissolved oxygen concentrations thereby leading to Lake Trout embryo mortality, but the effects of these methods on primary producers are unknown. We deployed in-situ nutrient diffusing substrates (NDS) at 3 spawning sites. The 1st site was treated with carcasses, the 2nd site was treated with analog pellets, and a 3rd lacked treatment (control). To estimate how suppression measures may alter nutrient limitation, we measured algal biomass in 6 NDS amendments at each site: nothing (control), N, P, N + P, ground carcasses, or pulverized analog pellets. We deployed 5 replicates of each amendment at each site before and after treating whole sites. N and P co-limited periphyton before carcasses or analog pellets were added to spawning sites (p < 0.01); however, nutrients were not limiting after the treatments were added to spawning sites (p = 0.31–1). Algal biomass was 4× higher after whole-site carcass treatments. In contrast, analog pellets appeared to suppress algal biomass in the amendments (20% of NDS at the control site post-treatment) and in the treatment plot (33% of pre-treatment biomass at analog pellet site). We also measured how individual ingredients in analog pellets altered periphyton biomass, which suggested that vitamin E, estrogen, and soybean oil ingredients reduced the growth of primary producers. Suppression methods may stimulate or reduce algal biomass, depending on the methods used, which could have cascading effects on food webs and potentially reduce the success of the control measures. Estimating how different Lake Trout suppression methods may alter basal resources in the littoral zone of Yellowstone Lake will help natural resource agencies develop effective plans to control invasive predators at early life stages while minimally altering ecosystems.

Invasive Lake Trout Reproduction in Yellowstone Lake under an Active Suppression Program

AbstractIn Yellowstone Lake, predation by invasive Lake Trout Salvelinus namaycush has caused significant abundance declines in native Yellowstone Cutthroat Trout Oncorhynchus clarkii bouvieri. Lake Trout suppression has been ongoing since 1995; assessment and simulation modeling are used to measure suppression effectiveness and guide efforts. Lake Trout reproduction demographics are linked to these modeling efforts via quantification of the population stock–recruitment relationship. To improve estimation of this relationship for Lake Trout in Yellowstone Lake, we assessed reproduction demographics by quantifying spawning periodicity, size at maturity, and female fecundity. Histological assessment suggested that females with a gonadosomatic index (GSI) &gt;3.0 and males with a GSI &gt;1.0 were capable of spawning. Approximately 65% of mature females appeared to have spawned on an annual cycle. In 2015, the mean absolute and relative fecundities were 4,612 eggs and 1,535 eggs/kg, respectively; temporal differences in relative fecundity (1996, 2006, 2007, and 2015) were not statistically significant. Lake Trout population fecundity has declined from a peak in 2010 due to reduction in abundance of spawners. The estimated population fecundity of approximately 4.7 million eggs in 2020 represents an 81% decline from the mean estimate of previous samples and an 87% reduction from peak population fecundity. Despite declines in population fecundity, age‐2 recruitment has increased in recent years; our results suggest these increases are not related to changes in reproductive demographics, but rather are related to increased prerecruitment survival. Our results provide information for understanding temporal variation in spawning stock biomass of Lake Trout in Yellowstone Lake and the capacity of the population to respond to suppression. When responding to an invasive species, fishery managers should recognize that population characteristics (e.g., reproduction demographics, population dynamics) in invaded systems may differ from those in the species’ native range; such differences can influence the effectiveness of management actions and policies.

Use of otolith microchemistry to identify subbasin natal origin and use by invasive Lake Trout in Yellowstone Lake

Nonindigenous lake trout (Salvelinus namaycush) expansion in Yellowstone Lake has led to a large decline in the native Yellowstone cutthroat trout (Oncorhynchus clarkii bouvieri) population. We assessed whether otolith microchemistry could be used to identify subbasin natal origins and long-term use by lake trout as a potential tool for optimizing removal efforts. 87Sr:86Sr and Sr:Ca ratios in otolith cores were used to assess natal origins and 87Sr:86Sr ratios in otolith transects were used to assess movement patterns. Water chemistry was similar throughout the lake, ranging from 0.70634 to 0.70642 and 3.94 to 4.38 mmol/mol for 87Sr:86Sr and Sr:Ca ratios, respectively. Lake trout otoliths also showed little variation in 87Sr:86Sr and Sr:Ca ratios of the natal region and 87Sr:86Sr across otolith transects. Thus, we found that microchemical differences among Sr isotope and Sr:Ca elemental ratios in otoliths were insufficient to detect the natal origin or extensive within-lake movement that has been established from telemetry investigations. Detailed analysis of other elements or isotopes in hard-part microchemistry, in combination with other tools for detecting movement, may improve detection of natal origin and life history movement among fishes within freshwater lentic systems.

Evaluating a Permeable‐Style Fish Barrier to Prevent the Upstream Recolonization of Nonnative Trout during an Eradication Project

AbstractIn the western United States, the introduction of nonnative Brook Trout Salvelinus fontinalis has had deleterious effects on native Cutthroat Trout Oncorhynchus clarkii subspecies, and often their populations must be controlled or removed if Cutthroat Trout are to persist. Man‐made fish migration barriers are integral components of stream restoration projects, and typical designs are intended to be permanent and to funnel water over a drop and onto a splash pad. The water elevation drop and the splash pad, which prevents a jumping pool, are mechanisms intended to prevent fish from navigating upstream past the structure. In this study, we installed a temporary, permeable‐style barrier that was designed to have water flow onto and through a horizontal, expanded steel panel. When fish attempted to move upstream, they would follow the water flow and end up underneath the barrier, with no opportunity to move further. The permeable barrier proved effective in preventing the upstream movement of Brook Trout, and additional advantages to this barrier style included straightforward permitting, low cost, ease of installation, and quick removal. The main disadvantage was the periodic cleaning (average of 7 trips/year) that was required to maintain its intended function. The permeable barrier separated stream reaches for 5 years, allowing biologists to (1) eradicate Brook Trout upstream through multiple‐pass backpack electrofishing while preserving native Yellowstone Cutthroat Trout O. clarkii bouvieri and (2) apply a successful piscicide treatment below the barrier.

Carcass deposition to suppress invasive lake trout causes differential mortality of two common benthic invertebrates in Yellowstone Lake

Invasive species require management to mitigate their harmful effects on native biodiversity and ecosystemprocesses. However, such management can also have negative, unintended consequences on non-target taxa,ecosystem processes, and food web dynamics. In Yellowstone Lake, invasive lake trout (Salvelinus namaycush)have caused a decline in the native Yellowstone cutthroat trout (Oncorhynchus clarkii bouvieri) population. Tosuppress the invader, lake trout carcasses are deposited on the species’ spawning sites, causing embryo mortalityby reducing dissolved oxygen as they decay. The non-target effects of carcass deposition are unknown, but benthicinvertebrates may be sensitive to reductions in dissolved oxygen. Benthic invertebrate taxa have varying hypoxiatolerances; caddisflies of the family Limnephilidae are hypoxia sensitive whereas the amphipods Gammarus lacustrisand Hyalella azteca are hypoxia tolerant. Both taxa are widespread and abundant in Yellowstone Lake andcomprise a large proportion of fish diets, and changes in their abundances could therefore alter food web dynamics.We conducted an in situ experiment to determine if carcass deposition causes mortality in these two benthic invertebratetaxa. The probability of mortality for caddisflies was 3.15 times higher in carcass treatments compared tocontrols, while amphipod mortality did not change in response to carcass treatment. Amphipods, which contributemost significantly to fish diets, are unlikely to be reduced in response to carcass deposition, which is confined to asmall fraction of the lake where lake trout spawn, limiting the possibility for lake-wide effects. We conclude thatcarcass deposition is unlikely to alter the availability of invertebrates as a food source for fish in Yellowstone Lake.

Benthic Suffocation of Invasive Lake Trout Embryos by Fish Carcasses and Sedimentation in Yellowstone Lake

AbstractIntroduced Lake Trout Salvelinus namaycush threaten native Yellowstone Cutthroat Trout Oncorhynchus clarkii bouvieri in Yellowstone Lake, Yellowstone National Park, where gill nets have been used to suppress subadult and adult Lake Trout since 1995. However, survival of embryonic and larval life history stages can have profound effects on the population dynamics of Lake Trout. Inducing additional mortality at those stages, especially if used in concert with intensive gillnetting of older fish, could enhance overall suppression efforts. Therefore, we conducted controlled field experiments at Yellowstone Lake to systematically evaluate the effects of sediment deposition and ground Lake Trout carcass deposition on Lake Trout embryos in pre‐positioned incubators. Sediment deposition caused dissolved oxygen concentrations to decline below lethal levels for a prolonged overwinter period (92 d). Embryo mortality among overwintering incubators varied from 97.0 ± 5.3% (mean ± SE) at the substrate surface to 100.0 ± 0.0% at 20 cm below the substrate surface. Decomposition of ground carcass material on spawning sites caused dissolved oxygen concentrations to decline to lethal levels (&lt;3.4 mg/L) for about 9 d after biomass application rates of 14 and 28 kg/m2 in treatment plots. Exposure to ground carcass material resulted in 100.0 ± 0.0% embryo mortality at the substrate surface and within interstices 20 cm below the surface in 14‐ and 28‐kg/m2 biomass treatments. Embryo mortality was probably caused by hypoxic conditions within substrates in both experiments. The deposition of sediment and ground Lake Trout carcass material on Lake Trout spawning sites in Yellowstone Lake could provide an additional source of mortality in ongoing Lake Trout suppression efforts. These methods may also be beneficial in other systems when incorporated in an integrated pest management approach targeting multiple life history stages of invasive freshwater fish.

Abiotic conditions are unlikely to mediate hybridization between invasive rainbow trout and native Yellowstone cutthroat trout in a high-elevation metapopulation

Understanding factors mediating hybridization between native and invasive species is crucial for conservation. We assessed the spatial distribution of hybridization between invasive rainbow trout (Oncorhynchus mykiss) and native Yellowstone cutthroat trout (Oncorhynchus clarkii bouveri) in the Lamar River of Yellowstone National Park using a paired telemetry and genetic dataset. Spawning populations containing hybrids (15/30) occupied the full spectrum of abiotic conditions in the watershed (stream temperature, stream size, runoff timing), including an intermittent stream that dried completely in late June, and mainstem spawning locations. Hybrids and rainbow trout occupied an entire high-elevation (∼2500–1900 m) tributary where rainbow trout ancestry was highest in headwaters and decreased downstream. Fluvial distance to this ostensible source population was the only covariate included in top hybridization models; effects of abiotic covariates and stocking intensity were relatively weak. In this watershed, abiotic conditions are unlikely to mediate continued hybridization. We conclude that management intervention is important for the persistence of nonhybridized Yellowstone cutthroat trout and highlight the value of pairing telemetry with genetic analysis to identify and characterize populations for hybridization assessments.

Diets of Longnose Sucker in Yellowstone Lake, Yellowstone National Park, USA

Invasive species introduction and expansion is the second greatest threat to global biodiversity decline after habitat degradation. Introduced in the 1930s, the benthivorous Longnose Sucker (Catostomus catostomus) became established in Yellowstone Lake, Wyoming, USA, and used tributary streams for spawning. With this introduction, concerns were raised regarding their possible competition for food resources with native adfluvial Yellowstone Cutthroat Trout (Oncorhynchus clarkii bouvieri). Additionally, insufficient literature exists on Longnose Sucker feeding habits throughout their range, and there has been no comprehensive study of Longnose Sucker diet in Yellowstone Lake. The need exists for understanding the community ecology and food web dynamics in Yellowstone Lake, especially as non-native Lake Trout (Salvelinus namaycush) have caused declines in Yellowstone Cutthroat Trout through predation. The objectives of this study were to examine possible size-specific shifts in feeding habits, evaluate feeding strategy, and compare historical and contemporary diet data of Longnose Suckers in Yellowstone Lake. Diet data collected during summer of 2018 were analyzed by length-class to test for size-specific diet shifts. As Longnose Sucker length increased, copepods (Diacyclops bicuspidatus thomasi, Leptodiaptomus ashlandi or Hesperodiaptomus shoshone) decreased in proportion by weight. In contrast, dipterans (Chironomidae) and amphipods (Hyalella spp. or Gammarus spp.) varied in proportion by weight in the diet across length classes. We assessed the feeding strategy by evaluating the relationship between prey-specific abundance and percent frequency of occurrence. This assessment indicates that Longnose Suckers have a heterogeneous diet and generalized feeding strategy as all prey items had a prey-specific abundance value of <50%. Diet composition differed significantly between historical and contemporary samples, likely related to the differences in sampling locations and possibly due to a Lake Trout-induced trophic cascade. This study established the diet composition and feeding habits of Longnose Suckers residing in Yellowstone Lake, thus, expanding our knowledge of Longnose Sucker feeding patterns and ecology.

Yellowstone Lake Ecosystem Restoration: A Case Study for Invasive Fish Management

Invasive predatory lake trout Salvelinus namaycush were discovered in Yellowstone Lake in 1994 and caused a precipitous decrease in abundance of native Yellowstone cutthroat trout Oncorhynchus clarkii bouvieri. Suppression efforts (primarily gillnetting) initiated in 1995 did not curtail lake trout population growth or lakewide expansion. An adaptive management strategy was developed in 2010 that specified desired conditions indicative of ecosystem recovery. Population modeling was used to estimate effects of suppression efforts on the lake trout and establish effort benchmarks to achieve negative population growth (λ &lt; 1). Partnerships enhanced funding support, and a scientific review panel provided guidance to increase suppression gillnetting effort to &gt;46,800 100-m net nights; this effort level was achieved in 2012 and led to a reduction in lake trout biomass. Total lake trout biomass declined from 432,017 kg in 2012 to 196,675 kg in 2019, primarily because of a 79% reduction in adults. Total abundance declined from 925,208 in 2012 to 673,983 in 2019 but was highly variable because of recruitment of age-2 fish. Overall, 3.35 million lake trout were killed by suppression efforts from 1995 to 2019. Cutthroat trout abundance remained below target levels, but relative condition increased, large individuals (&gt; 400 mm) became more abundant, and individual weights doubled, probably because of reduced density. Continued actions to suppress lake trout will facilitate further recovery of the cutthroat trout population and integrity of the Yellowstone Lake ecosystem.

Leveraging public harvest to reduce invasive hybridization in Yellowstone National Park: field identification and harvest of cutthroat\xa0\xd7\xa0rainbow trout hybrids

Leveraging public harvest can be a cost-effective invasive species management tool, but target taxa must be correctly identified and removed at rates that achieve biological objectives. We explored the potential role of recreational anglers to curtail expanding hybridization between invasive rainbow trout (Oncorhynchus mykiss; RT) and native Yellowstone cutthroat trout (O. clarkii bouvieri; YCT) in the Lamar River watershed in Yellowstone National Park. We sought to (1) develop a hybrid identification key that could be used by anglers and (2) estimate angler participation, catch, and potential exploitation rates. We assessed seven morphological features of trout in the field (n = 251, 15 locations) and collected fin clips to estimate RT ancestry proportion using genetic analysis. An identification key was built using recursive partitioning to objectively distinguish YCT from RT and hybrids. A single-choice dichotomous key (white pelvic fin tip present/absent) correctly classified 93% of fish as native (YCT) or containing RT ancestry (RT or hybrid). Success increased to 97% when a second criterion was added (head spot count ≥ 6). Using angler surveys (2013–2017), we estimated that 10,000 anglers catch 50,000 trout annually. In a popular road-accessible area, most trout are probably caught and released ~ 5 times each year. The combination of high angler participation, substantial annual catch, and an accurate and easy to use identification method indicate that leveraging public harvest is a promising management tool. Invasive hybridization is a global conservation issue threatening many native taxa; this case study highlights some factors for resource managers to consider prior to implementing public harvest regulations and the benefits of standardized keys to distinguish hybrids in the field.

Organic Pellet Decomposition Induces Mortality of Lake Trout Embryos in Yellowstone Lake

AbstractYellowstone Lake is the site of actions to suppress invasive Lake Trout Salvelinus namaycush and restore native Yellowstone Cutthroat Trout Oncorhynchus clarkii bouvieri and natural ecosystem function. Although gill netting is effective (Lake Trout λ ≤ 0.6 from 2012 through 2018), the effort costs more than US$2 million annually and only targets Lake Trout age 2 and older. To increase suppression efficiency, we developed an alternative method using organic (soy and wheat) pellets to increase mortality of Lake Trout embryos on spawning sites. Decomposition of pellets during two in situ experiments caused dissolved oxygen (DO) concentrations to temporarily decline to lethal levels (&lt;3.4 mg/L) within days of application. Embryo mortalities during the first exposure period (days 1–6 following application) were high at all treatment levels (1.75–28.0 kg/m2) at the substrate surface and within interstices 20 cm below the surface, varying from 97 ± 1.8% (mean ± SE) to 100 ± 0.0%, but may have been enhanced by a handling effect (exposure to sunlight). Embryo mortalities during the second exposure period (days 11–22) were highest 20 cm below the surface, varying from 78 ± 9.7% to 100 ± 0.0%. Almost all (98 ± 3.1%) Lake Trout embryos died after exposure to DO &lt; 3.4 mg/L for &gt;200 h during the second period. Pellets caused lethal DO for several weeks below the substrate surface, despite largely dissolving and dissipating from the surface of treated areas by day 39. Broad‐scale application of pellets at 1.75 kg/m2 following the spawning period in autumn may reduce Lake Trout recruitment and enhance population suppression because the area of 14 verified spawning sites is only 11.4 ha (0.03% of lake surface area). Pellet application may be useful in other similar systems as part of an integrated pest management approach targeting multiple life stages of invasive freshwater fish.

Variable hybridization outcomes in trout are predicted by historical fish stocking and environmental context.

Hybridization can profoundly affect the genomic composition and phenotypes of closely related species, and provides an opportunity to identify mechanisms that maintain reproductive isolation between species. Recent evidence suggests that hybridization outcomes within a species pair can vary across locations. However, we still do not know how variable outcomes of hybridization are across geographic replicates, and what mechanisms drive that variation. In this study, we described hybridization outcomes across 27 locations in the North Fork Shoshone River basin (Wyoming, USA) where native Yellowstone cutthroat trout and introduced rainbow trout co-occur. We used genomic data and hierarchical Bayesian models to precisely identify ancestry of hybrid individuals. Hybridization outcomes varied across locations. In some locations, only rainbow trout and advanced backcrossed hybrids towards rainbow trout were present, while trout in other locations had a broader range of ancestry, including both parental species and first-generation hybrids. Later-generation intermediate hybrids were rare relative to backcrossed hybrids and rainbow trout individuals. Using an individual-based simulation, we found that outcomes of hybridization in the North Fork Shoshone River basin deviate substantially from what we would expect under null expectations of random mating and no selection against hybrids. Since this deviation implies that some mechanisms of reproductive isolation function to maintain parental taxa and a diversity of hybrid types, we then modelled hybridization outcomes as a function of environmental variables and stocking history that are likely to affect prezygotic barriers to hybridization. Variables associated with history of fish stocking were the strongest predictors of hybridization outcomes, followed by environmental variables that might affect overlap in spawning time and location.

Introduced lake trout alter nitrogen cycling beyond Yellowstone Lake

Introduced predators can have large effects on the ecosystem in which they were introduced, but how much these effects extend to other ecosystems beyond the invaded one is less known. We compared how lake trout (Salvelinus namaycush) affected nutrient cycling in an invaded and adjacent ecosystem in Yellowstone National Park, Wyoming, USA. Introduced lake trout in Yellowstone Lake caused the native Yellowstone cutthroat trout (Oncoryhynchus clarkii bouvieri) population to decline. Native cutthroat trout are a dominant animal in the lake and may alter nutrient cycling in both Yellowstone Lake where they reside and in tributary streams used for spawning. We estimated changes in nutrient transport and nutrient uptake in both Yellowstone Lake and Clear Creek, a spawning stream, before and after the invasion of lake trout. Annual area‐specific excretion fluxes from cutthroat trout were nine times higher in Clear Creek compared to Yellowstone Lake when cutthroat trout were abundant. However, fluxes within the lake and stream were similar after cutthroat trout declined. In Yellowstone Lake, zooplankton excretion supplied 86% of ammonium (NH4+) that was taken up, but cutthroat trout only supplied &lt;0.3% after the introduction of lake trout. Conversely, NH4+ excreted by cutthroat trout was likely a major flux in Clear Creek, because NH4+ fluxes from cutthroat trout exceeded watershed export of NH4+ in years when &gt;3000 cutthroat trout spawned. Furthermore, NH4+ excretion fluxes from spawning cutthroat trout in Clear Creek supplied up to 6.1% of the NH4+ demanded by microbes after the introduction of lake trout. However, based on modeled past NH4+ uptake, we estimated that up to 60% of NH4+ excreted by spawning cutthroat trout may have been taken up by stream microbes when cutthroat trout were abundant. Therefore, transported NH4+ from spawning cutthroat trout was likely an integral part of N cycling in tributary streams in the past. By comparing the effects of declining cutthroat trout on two ecosystems, we show that lake trout had a larger effect on N cycling within an adjacent stream ecosystem than the invaded lake ecosystem itself, because the migratory behavior of cutthroat trout concentrated them in spawning streams increasing their effect.