Microhabitat Scale Research Articles

Habitat quality effects on the abundance of a coral-dwelling fish across spatial scales.

Microhabitat associated fishes are expected to be negatively affected by coral reef degradation, given that many species are coral dwellers. However, the factors underlying this negative impact and the spatial scale(s) at which it occurs are poorly understood. We explored how habitat quality metrics and host preferences influence fish abundance across multiple spatial scales, using the functionally important cleaner fish Elacatinus evelynae as a study species. We surveyed fish at 10 sites in Curaçao that varied in coral cover and health. At the microhabitat scale, we found that E. evelynae group size increases on large, healthy corals and on some coral host species, namely Montastraea cavernosa. We also found that, although E. evelynae can occupy at least 10 coral host species, it selectively inhabits just three corals: M. cavernosa, Colpophyllia natans, and Diploria labrynthiformis. Scaling up to explore goby abundance along 30-m transects, we did not find a clear relationship between live coral cover and goby abundance. However, goby abundance was substantially higher at one location with elevated coral cover and a high relative abundance of E. evelynae host species. Collectively, these results confirm that E. evelynae abundance is impacted by reef health. They also indicate that the species' long-term persistence may depend on both the maintenance of healthy coral hosts and the gobies' plasticity in host preferences on changing reefscapes. Cryptobenthic fishes such as E. evelynae play a vital role in the ecosystem and understanding drivers of their abundance is important as reefs face increased degradation.

Living in a predictable environment: Intraspecific variation in tadpole size and shape of the Sierra's treefrog

AbstractWithin the breeding sites of anurans, factors at the microhabitat scale can exhibit variations over the years, resulting in temporal fluctuations within these sites. These fluctuations may lead to modifications in “normal larval development” and observable phenotypic changes. These developmental alterations appear to have evolved as shared strategies for achieving reproductive success and ensuring the survival of offspring. In a population of Boana cordobae inhabiting the Central Pampean Sierras (Córdoba, Argentina), the coexistence of pre‐ and prometamorphic tadpoles throughout the year, coupled with variations in size and shape within the same developmental stage, has led us to question about the duration of the larval period, variations in the timing of developmental events, and the possible existence of distinct larval morphs for this species. Utilizing data collected over four consecutive years from various locations, we described the development, growth, and larval morphology using both linear and geometric morphometrics during the pre‐ and prometamorphic stages. Our aim was to comprehend how anuran larvae in predictable environments synchronize the timing of their phenotypic transformations with external conditions. We identified two distinct cohorts: spring–summer and autumn–spring, each exhibiting distinct rates of growth and development until metamorphosis, resulting in size discrepancies. Moreover, the physical attributes of the breeding sites influenced the size of the tadpoles. However, the observed variation in shape was not related to the ontogenetic period, cohort, or developmental site. Ultimately, the observed variations had no impact on the morphology at metamorphosis. The comprehensive data gathered from our observations in B. cordobae yield valuable insights that contribute to a deeper comprehension of anuran larval development under natural conditions where changes are predictable and follow a regular pattern throughout the year, ultimately maximizing reproductive success.

Habitat features important for the conservation of the endangered Sloane’s Froglet (Crinia sloanei) in peri-urban environments

Context Determining and quantifying habitat selection of endangered species in peri-urban environments assists planners and managers to develop strategies and alternative conservation measures in the face of urban expansion and development. Sloane’s Froglet (Crinia sloanei), listed nationally as endangered in Australia, is a little-known species distributed within peri-urban environments, where foundational ecological information and the development of adequate conservation responses has been lacking. Aims (a) To determine a core calling period for Sloane’s Froglet and detection probabilities for occupancy surveys. (b) To understand and characterise the habitat that Sloane’s Froglet uses at the wetland and microhabitat scale. Methods We used generalised linear modelling and the information-theoretic approach to model habitat preferences for this species at two scales: the waterbody scale, and the microhabitat scale. We quantified the habitat characteristics of waterbodies occupied by Sloane’s Froglet in winter, its peak breeding period, by measuring the biophysical characteristics of 54 occupied and 40 unoccupied waterbodies. The microhabitat and relative spatial positioning of Sloane’s Froglet within waterbodies was examined at 54 calling sites in an area of one m squared around individual male Sloane’s Froglets and 57 randomly selected unused sites. Wetlands were surveyed multiple times to determine detection probabilities. Key results Model selection indicated that Sloane’s Froglet is 450 times more likely to occupy a waterbody when an adjacent ephemeral shallow overflow is present; and are more likely to be present when there is greater cover of small stem-diameter emergent vegetation and less bare ground on the bank. The microhabitat investigation of one m squared sites showed that Sloane’s Froglet’s calling sites are predominantly inundated, and at significantly shallower water depths, than unused sites. Sloane’s Froglet was found to always call from within the waterbody, distinguishing them from other sympatric Crinia species. Conclusions The habitat characteristics detailed provide information necessary for the management of Sloane’s Froglet and its habitat. Implications Housing and industrial development is occurring rapidly in Sloane’s Froglet habitat. The information provided here can be used to refine local and state government planning and better design appropriate responses. Indeed, results from this study are currently being used by agencies and environmental consultants when developing conservation plans and in the design of stormwater retention ponds in rapidly urbanising environments.

Solar photovoltaic energy development and biodiversity conservation: Current knowledge and research gaps

AbstractSolar photovoltaic (PV) has become the second renewable energy source, giving rise to potential conflicts with biodiversity conservation. However, the information available about the impacts and mitigation measures of solar PV energy is scarce and scattered, and a rigorous and comprehensive review on the topic is lacking. Here, we review the state of knowledge on its impacts and mitigation measures and identify main knowledge gaps. For that, we reviewed more than 2000 articles, out of which only 180 assessed the impacts of solar PV (N = 138) and/or propose mitigation measures (65). Even though Asia and Europe head the list of regions with the highest PV installed capacity (59% and 22%, respectively), a large portion of the existing knowledge is drawn from North American environmental contexts (48% of the studies), specifically from deserts (41%). Impacts were addressed on plants (26%), arthropods (14%), birds (10%), microorganisms (10%), reptiles (7%), mammals (4%), and bats (1%), but also on abiotic factors (e.g., humidity and temperature; 20%) and ecosystem services (3%). Most studies addressed the impact of PV on habitat alteration at landscape (33%) and microhabitat scale (20%), and on microclimate at microhabitat scale (17%), but other topics have been scarcely addressed (e.g., impact on microclimate at landscape scale or the potential of agrivoltaic systems). Lastly, 53% of the studies employed a single PV facility, and preconstruction situations were rarely reported (8%). There is a strong environmental context bias in the current understanding of PV impacts, which might not be extrapolable to other environmental situations like farmlands, where most of the solar PV capacity is being installed. Moreover, standardized and robust sampling designs are lacking to address cumulative, long‐term, and long‐scale impacts and produce comparable findings across contexts. Given the lack of empirical evidence and the irrepressible development of PV energy, it is advisable to apply an iterative monitoring and adaptive process to guarantee a safe energy transition. This review may provide useful guidance on prioritizing research efforts for a smooth shift to renewable energy.

From micro to mesoscale: Understanding the influence of macroalgal communities on Ostreopsis Schmidt blooms

Harmful Algal Blooms (HABs) are increasing in temperate areas, and the growth rates of benthic harmful dinoflagellates may be favoured in the context of global climate change. Benthic dinoflagellates, including species belonging to the Ostreopsis Schmidt genus, are known to develop on the surface of macroalgae and different macroalgal morphotypes and communities could host higher or lower cell abundances. The physical structure of the macroalgal substrate at the small scale (cm, microhabitat scale) and the structural complexity of the macroalgal community at the medium scale (few m, mesohabitat scale) could play a relevant role in bloom facilitation: the hypothesis that Ostreopsis species could be associated with macroalgal turfs and shrubs, structurally less complex communities than canopy-forming macroalgae, is especially under discussion and, if confirmed, could link bloom occurrence to regime shifts in temperate ecosystems. The present study, performed in two locations of the Ligurian Sea (Rochambeau, France and Vernazzola, Italy) aimed at understanding marine vegetation's role at the micro and mesohabitat scales in controlling the distribution and abundance of Ostreopsis. The abundance of the microalgal cells was quantified at different spatial scales, from cm to a few m, on different macroalgal species and communities, including artificial substrates, to tease apart the micro and mesohabitat effects. The results obtained show a high spatio-temporal variability, potentially hiding habitat-related patterns. The substrate's preferences diminish when cell abundances are very high, as in the case of Rochambeau, while in presence of moderate cell abundances as in Vernazzola or the first phases of blooms, it is possible to appreciate differences in abundances among substrates (in our study, Dictyota fasciola (Roth) Lamouroux supporting higher abundances). Our results open new research topics such as the study of blooms at a larger scale (macrohabitat) and testing different sampling methods to standardise the cells' abundances independently on the substrate.

Spatial ecology and microhabitat selection of the nocturnal pitviper Viridovipera stejnegeri (Squamata: Viperidae) in relation to prey.

Habitat is fundamental for facilitating various life activities in animals, for instance, snakes procure essential energy for survival and reproduction by selecting ambush microhabitats. While there has been extensive research on the selection of microhabitat for feeding in terrestrial and aquatic snakes, little is known about arboreal snakes. In the present study, we analyzed the ambush microhabitat preferences of Viridovipera stejnegeri, a widely distributed Asian pitviper in China, conducted association analysis between snake microhabitat and prey microhabitat and abundance to determine the ro5le of microhabitat selection in feeding. Employing random forest analysis and habitat selection functions, we further constructed a predictive framework for assessing the probability of ambush site selection by V. stejnegeri. Our results revealed that V. stejnegeri exhibited a distinct microhabitat preference for ambush prey. Among the 13 environmental factors assessed, V. stejnegeri showed pronounced preferences towards 12 of these factors, including climatic factors, geographical factors, and vegetation factors. Furthermore, although the preferences of V. stejnegeri overlapped substantially with those of its prey across multiple habitat factors, food abundance shows no significant association with various habitat factors of V. stejnegeri, and does not have significant predictive effect on habitat selection of V. stejnegeri. Therefore, we infer that V. stejnegeri does not preferentially select microhabitats with the highest food abundance, which does not support the hypothesis that "snakes select habitats based on the spatial distribution of prey abundance." By analyzing the characteristics of vegetation, geography, and climate, we conclude that V. stejnegeri tends to choose microhabitats with better ambush conditions to increase attack success rate, thereby achieving the optimal feeding success rate at the microhabitat scale, which is in line with the predictions of optimal foraging theory. This study provides new insights into the predation ecology and habitat selection of snakes.

Occupancy dynamics of free ranging American mink (Neogale vison) in Greece.

Identifying the environmental factors that determine the occurrence of invasive species is essential in defining and implementing effective control campaigns. Here, we applied multi-season occupancy models to analyze American mink (Neogale vison) track data collected using 121 floating rafts, as a function of factors occurring at multiple spatial scales. Our overall aim was to identify those factors that determine the use, colonization or abandonment of rafts by free ranging individuals found in western Macedonia, Greece. We found that increasing values of shrubs and rock cover at the micro-habitat scale were positively associated with the species' probability of raft use, as was the density of medium-sized rivers at the landscape scale. Colonization was found to increase with increasing amounts of shrub and reed cover; however, both variables were not informative. Conversely, the distance from the nearest fur farm was highly informative in predicting raft abandonment by the species. Effective control actions may require removal by trapping along rocky or densely vegetated riverbanks or lake shores located in the vicinity of the established fur farms in the area. Habitat management, although possible, may be difficult to implement due to the ability of the species to adapt. Finally, fur farms should maximize security and establish an early warning and rapid eradication system in case of future escapes.

Effects of Microtopography on Soil Microbial Community Structure and Abundance in Permafrost Peatlands.

Soil microorganisms play crucial roles in the stability of the global carbon pool, particularly in permafrost peatlands that are highly sensitive to climate change. Microtopography is a unique characteristic of peatland ecosystems, but how microtopography affects the microbial community structures and their functions in the soil is only partially known. We characterized the bacterial and fungal community compositions by amplicon sequencing and their abundances via quantitative PCR at different soil depths in three microtopographical positions (hummocks, flats, and hollows) in permafrost peatland of the Greater Xing'an Mountains in China. The results showed that the soil of hummocks displayed a higher microbial diversity compared to hollows. Microtopography exerted a strong influence on bacterial community structure, while both microtopography and soil depth greatly impacted the fungal community structure with variable effects on fungal functional guilds. Soil water content, dissolved organic carbon, total phosphorus, and total nitrogen levels of the soil mostly affected the bacterial and fungal communities. Microtopography generated variations in the soil water content, which was the main driver of the spatial distribution of microbial abundances. This information stressed that the hummock-flat-hollow microtopography of permafrost peatlands creates heterogeneity in soil physicochemical properties and hydrological conditions, thereby influencing soil microbial communities at a microhabitat scale. Our results imply that changes to the water table induced by climate warming inducing permafrost degradation will impact the composition of soil microbes in peatlands and their related biogeochemical functions, eventually providing feedback loops into the global climate system.

Microhabitats shape ant community structure in a spatially heterogeneous grassy woodland

AbstractHabitat structure is a key determinant of local animal diversity, with attributes of vegetation such as cover or complexity generating key resources for different species. However, habitat–diversity relationships can vary across spatial scales, and among different taxa and ecosystem types. Here we report on a study of habitat structure and its effects on ant communities at two spatial scales in a temperate grassy woodland characterized by heterogenous tree and grassland cover. We examined species richness and the occurrence of ground‐dwelling ant species at (1) microhabitat scales defined by a triplet of sites comprising open ground, adjacent to a log, and under a tree, each separated by a few meters, and (2) at macrohabitat scales defined by sites grouped into broader vegetation types defined by low or high levels of shrub and tree cover and separated by 100s of meters. We identified 117 species of ant from 41 genera, from a total of 155,004 individuals collected. Ant community composition differed significantly among microhabitats and macrohabitats, but mean species richness only differed at the microhabitat scale where it was the highest under trees and lower adjacent to logs and in open ground. Notably, ant species within the genera Iridomyrmex, Monomorium, and Pheidole displayed a spectrum of microhabitat preferences, highlighting the ecological flexibility within these groups. By contrast, all species of Melophorus preferred open habitat and all species of Camponotus preferred habitat under trees. Our study shows that ant communities in grassy woodlands are structured by vegetation cover and habitat “openness” most strongly at “microhabitat” scales, which is likely due to a distinct combination of thermal and foraging attributes that vary across relatively small distances. Our results also suggest that broad classifications of ants into functional types based on vegetation preference may not be applicable at small scales where species within the same genus can display contrasting preferences. Land management that promotes habitat heterogeneity at small spatial scales may promote species coexistence and benefit ant diversity more than management activities focusing on larger spatial scales within the same ecosystem.

Application of lidar to assess the habitat selection of an endangered small mammal in an estuarine wetland environment.

Light detection and ranging (lidar) has emerged as a valuable tool for examining the fine-scale characteristics of vegetation. However, lidar is rarely used to examine coastal wetland vegetation or the habitat selection of small mammals. Extensive anthropogenic modification has threatened the endemic species in the estuarine wetlands of the California coast, such as the endangered salt marsh harvest mouse (Reithrodontomys raviventris; SMHM). A better understanding of SMHM habitat selection could help managers better protect this species. We assessed the ability of airborne topographic lidar imagery in measuring the vegetation structure of SMHM habitats in a coastal wetland with a narrow range of vegetation heights. We also aimed to better understand the role of vegetation structure in habitat selection at different spatial scales. Habitat selection was modeled from data compiled from 15 small mammal trapping grids collected in the highly urbanized San Francisco Estuary in California, USA. Analyses were conducted at three spatial scales: microhabitat (25 m2), mesohabitat (2025 m2), and macrohabitat (~10,000 m2). A suite of structural covariates was derived from raw lidar data to examine vegetation complexity. We found that adding structural covariates to conventional habitat selection variables significantly improved our models. At the microhabitat scale in managed wetlands, SMHM preferred areas with denser and shorter vegetation and selected for proximity to levees and taller vegetation in tidal wetlands. At the mesohabitat scale, SMHM were associated with a lower percentage of bare ground and with pickleweed (Salicornia pacifica) presence. All covariates were insignificant at the macrohabitat scale. Our results suggest that SMHM preferentially selected microhabitats with access to tidal refugia and mesohabitats with consistent food sources. Our findings showed that lidar can contribute to improving our understanding of habitat selection of wildlife in coastal wetlands and help to guide future conservation of an endangered species.

Microhabitat characterization in the home range of the Mule deer (Odocoileus hemionus) in arid zones

Knowing the home range of a species helps to identify the resources it needs to survive and reproduce and how this behavior is expressed spatially. Within home ranges, core areas are the sites where the main resources are abundant. The microhabitat is a spatial area composed of variables that can affect individual behavior. In this sense, the characterization of this inner part of the home range can contribute significantly to understanding the elements that these areas offer compared to the rest of the habitat of a population. This work characterized the home range and areas outside it, as well as the core areas of female mule deer on a microhabitat scale in the Chihuahuan Desert, México. The structure and composition of the vegetation were characterized according to three habitat use hierarchies: interior of the core areas and zones within and outside the home ranges of seven female mule deer. A Principal Component Analysis (PCA) was performed, and a hierarchical clustering was used to relate the variables. The variation in structure and composition in each hierarchy was evaluated by performing multivariate permutation tests. Twenty-five plant species were recorded in the transects. The PCA showed the most similar use hierarchies are the core and home range inner areas. The core area presents higher density and cover-dominance values, and the zone outside the home range showed high values of distance to the individual closest to the central point and greater variation in this parameter. The MANOVA indicated a significant variation in vegetation structure and composition in relation to use hierarchies. Significant differences in vegetation structure and composition were found at the microhabitat level between the core area of activity and the zones within and outside the home range. The core area has a greater structural complexity of vegetation, with greater plant coverage-abundance and density; this suggests that the core area is located in a more competitive and saturated environment. Outside the home range, the microhabitat has greater spatial heterogeneity of vegetation, with greater distance and variation of plant cover. Future research could address the spatial (micro-macro) and temporal scales to better understand the ecological dynamics of the species in different habitat use hierarchies.

Seasonal and Size-Related Fish Microhabitat Use Upstream and Downstream from Small Hydropower Plants

Hydropower can have significant impacts on riverine ecosystems due to hydropeaking (i.e., artificial rapid and short-term fluctuations in water flow and water levels downstream and upstream of hydropower stations) that negatively affect downstream fish. However, when it comes to analyzing species habitat use and availability above and below small hydropower plants (SHPPs), studies conducted at the microhabitat scale are scarcer, particularly in Mediterranean rivers. The goal of this study is to assess the seasonal (early and late summer) and size-related (juveniles and adults) microhabitat use by native fish above and below SHPPs. Fish were sampled by a modified point electrofishing procedure, and a multivariate approach was used to analyze microhabitat use and availability data from sites located upstream (reference) and downstream (disturbed) from two SHPPs in northeast Portugal. Cover and water depth were the most influential variables in the use of microhabitat for all species at both the reference and disturbed sites, although some differences in the variable rankings were found. Leuciscids exhibited similar patterns of non-random (i.e., selective) microhabitat use between the reference and the disturbed sites. Overall, the seasonal and size-related patterns in species microhabitat use were similar, with the majority of species displaying seasonal patterns in microhabitat use from early summer to late summer. This study showed that differences in fish microhabitat use between downstream SHPP and upstream reference sites were negligible. Cover might have had a significant role in tempering the effects of detrimental environmental conditions, namely, peaking flows, by providing hydraulic shelter, highlighting the need to maintain riparian vegetation strips and mosaics of submerged aquatic macrophytes, as well as the provision of coarse substrata that can be critical for fish. Future studies are needed to better clarify how different size classes of fish select microhabitats when facing past and present hydropeaking conditions.

Tropical forest mammal occupancy and functional diversity increase with microhabitat surface area.

Many animal-environment interactions are mediated by the physical forms of the environment, especially in tropical forests, where habitats are structurally complex and highly diverse. Higher structural complexity, measured as habitat surface area, may provide increased resource availability for animals, leading to higher animal diversity. Greater habitat surface area supports increased animal diversity in other systems, such as coral reefs and forest canopies, but it is uncertain how this relationship translates to communities of highly mobile, terrestrial mammal species inhabiting forest floors. We tested the relative importance of forest floor habitat structure, encompassing vegetation and topographic structure, in determining species occupancy and functional diversity of medium to large mammals using data from a tropical forest in the Udzungwa Mountains of Tanzania. We related species occupancies and diversity obtained from a multispecies occupancy model with ground-level habitat structure measurements obtained from a novel head-mounted active remote sensing device, the Microsoft HoloLens. We found that habitat surface area was a significant predictor of mean species occupancy and had a significant positive relationship with functional dispersion. The positive relationships indicate that surface area of tropical forest floors may play an important role in promoting mammal occupancy and functional diversity at the microhabitat scale. In particular, habitat surface area had higher mean effects on occupancy for carnivorous and social species. These results support a habitat surface area-diversity relationship on tropical forest floors for mammals.

Effects of experimental warming at the microhabitat scale on oak leaf traits and insect herbivory across a contrasting environmental gradient

Forest microclimatic variation can result in substantial temperature differences at local scales with concomitant impacts on plant defences and herbivory. Such microclimatic effects, however, may differ across abiotically contrasting sites depending on background environmental differences. To test these cross‐scale effects shaping species ecological and evolutionary responses, we experimentally tested the effects of aboveground microhabitat warming on insect leaf herbivory and leaf defences (toughness, phenolic compounds) for saplings of sessile oak Quercus petraea across two abiotically contrasting sites spanning 9° latitude. We found higher levels of herbivory at the low‐latitude site, but leaf traits showed mixed patterns across sites. Toughness and condensed tannins were higher at the high‐latitude site, whereas hydrolysable tannins and hydroxycinnamic acids were higher at the low‐latitude site. At the microhabitat scale, experimental warming increased herbivory, but did not affect any of the measured leaf traits. Condensed tannins were negatively correlated with herbivory, suggesting that they drive variation in leaf damage at both scales. Moreover, the effects of microhabitat warming on herbivory and leaf traits were consistent across sites, i.e. effects at the microhabitat scale play out similarly despite variation in factors acting at broader scales. These findings together suggest that herbivory responds to both microhabitat (warming) and broad‐scale environmental factors, whereas leaf traits appear to respond more to environmental factors operating at broad scales (e.g. macroclimatic factors) than to warming at the microhabitat scale. In turn, leaf secondary chemistry (tannins) appears to drive both broad‐scale and microhabitat‐scale variation in herbivory. Further studies are needed using reciprocal transplants with more populations across a greater number of sites to tease apart plant plasticity from genetic differences contributing to leaf trait and associated herbivory responses across scales and, in doing so, better understand the potential for dynamics such as local adaptation and range expansion or contraction under shifting climatic regimes.

Factors driving bumble bee (Hymenoptera: Apidae: Bombus) and butterfly (Lepidoptera: Rhopalocera) use of sheared shrubland and young forest communities of the western Great Lakes.

In the northern Great Lakes region, the creation and maintenance of early-successional woody communities as wildlife habitat have increasingly become a conservation priority. The extent to which insect pollinators use these systems remains largely anecdotal. In summer (June-August) of 2021, we surveyed 49 early-successional sites in the western Great Lakes region treated with either shrub-shearing or silviculture (young forest) for bumble bees, butterflies, and habitat components (i.e., structural vegetation and floral resources). Hierarchical distance models predicted pollinator densities (λ^) to be, on average, λ^ = 84 bumble bees/ha and λ^ = 102 butterflies/ha. Although sheared shrubland and young forest communities supported comparable densities of bumble bees and butterflies, density was not equal across all sites. At the microhabitat scale, butterfly density and morphospecies richness were negatively associated with tall shrub cover and butterfly morphospecies richness (but not density) was driven by floral richness. Similarly, bumble bee density was positively associated with metrics of floral resources, underscoring the importance of blooming plants within these woody systems. Landscape covariates explained variation in butterfly density/richness but not bumble bee density. Ultimately, our results demonstrate that blooming plant abundance is an important driver of bumble bee and butterfly densities within these managed early-successional communities. Because early-successional woody communities are dynamic and their herbaceous openings are ephemeral, routine management would ensure that a variety of successional conditions exist on the landscape to meet the needs of bumble bees, butterflies, and potentially other insect pollinators.

Facilitation of benthic assemblages by Bluehead Chubs: Testing the stress‐gradient hypothesis in streams

AbstractEcosystem engineers facilitate beneficiary species by ameliorating physical habitat. The stress‐gradient hypothesis (SGH) predicts the importance of facilitation in communities should increase with physical stress but has rarely been tested in freshwater. Bluehead Chubs (Nocomis leptocephalus) build gravel nests for spawning, which can reduce negative effects of sedimentation for lithophilic species including invertebrates and other taxa. Our goal was to test the SGH using chubs and benthic assemblages as a model system. We surveyed assemblages in chub nests, paired unmodified substrate and reach‐wide samples in 10 Piedmont streams in South Carolina, USA, placed across a gradient of sedimentation. Based on the SGH, we predicted benthic assemblage diversity in chub nests would show no relationship to increasing embeddedness but that diversity in unmodified substrate should decrease with embeddedness. We found that taxa counts, richness and Shannon diversity were higher in chub nests than unmodified substrate but were lower than reach‐wide samples. Canonical correspondence analyses indicated benthic assemblages differed between nests and unmodified substrate, but assemblages in both microhabitats were nested subsets of the more diverse reach‐wide assemblage. Contrary to our hypotheses, diversity in both microhabitats decreased significantly with substrate embeddedness but was consistently higher in nests. While substrate modification by chubs clearly facilitated benthic diversity at the microhabitat scale, it was not sufficient to overcome the worst effects of sedimentation. This study provides mixed evidence for SGH in streams; chub nesting appears to be facilitative at the microhabitat scale but may not have reach‐wide effects on benthic assemblages in this system.

Preferred temperature in the warmth of cities: Body size, sex and development stage matter more than urban climate in a ground-dwelling spider

Most ectotherms rely on behavioural thermoregulation to maintain body temperatures close to their physiological optimum. Hence, ectotherms can drastically limit their exposure to thermal extremes by selecting a narrower range of temperatures, which includes their preferred temperature (Tpref). Despite evidence that behavioural thermoregulation can be adjusted by phenotypic plasticity or constrained by natural selection, intraspecific Tpref variations across environmental gradients remain overlooked as compared to other thermal traits like thermal tolerance. Here, we analyzed Tpref variation of spider populations found along a gradient of urban heat island (UHI) which displays large thermal variations over small distances. We measured two components of the thermal preference, namely the mean Tpref and the Tpref range (i.e., standard deviation) in 557 field-collected individuals of a common ground-dwelling spider (Pardosa saltans, Lycosidae) using a laboratory thermal gradient. We determined if Tpref values differed among ten populations from contrasting thermal zones. We showed that endogenous factors such as body size or sex primarily determine both mean Tpref and Tpref range. The Tpref range was also linked to the UHI intensity to a lesser extent, yet only in juveniles. The absence of relationship between Tpref metrics and UHI in adult spiders suggests a Bogert effect according to which the ability of individuals to detect and exploit optimal microclimates weakens the selection pressure of temperatures (here driven by UHI) on their thermal physiology. Alternatively, this lack of relationship could also indicate that temperature patterns occurring at the scale of the spiders' micro-habitat differ from measured ones. This study shows the importance of considering both inter-individual and inter-population variations of the Tpref range when conducting Tpref experiments, and supports Tpref range as being a relevant measure to inform on the strength of behavioural thermoregulation in a given population.

Hierarchical drivers of cryptic biodiversity on coral reefs

AbstractDeclines in habitat structural complexity have marked ecological outcomes, as currently observed in many of the world's ecosystems. Coral reefs have provided a model for such changes in marine ecosystems; still our understanding has been centered on corals and fishes at broad spatial scales when metazoan diversity on coral reefs is dominated by small cryptic taxa (herein: “cryptofauna”). Given the paucity of studies and high taxonomic complexity of the cryptofauna, both of which limit a priori hypotheses, we asked whether hierarchical structuring theory provides a compelling framework to impose order and quantify patterns. In general terms, we explored whether cryptic communities are sufficiently described by broad seascape parameters or limited by a set of processes operating at their distinctly nested microhabitat scale. To address this theory and gaps in knowledge for the cryptofauna, we characterized community structure in coral rubble, an eroded coral condition where biodiversity proliferates. Rubble was sampled along a depth and exposure gradient at Heron Island on the Great Barrier Reef, Australia, to parameterize environmental and morphological indicators of sessile taxa and motile cryptofauna communities. We used a hierarchical study framework from microhabitat to seascape scales, which were evaluated using nonstructured multivariate analyses and Bayesian structural equation modeling. While the nonstructured analyses showed the effects of seascape on the cryptobenthos and its community, this approach overlooked the finer hierarchical patterns in rubble ecology revealed only in the structured model. Seascape parameters (exposure and depth) influenced microhabitat complexity (i.e., rubble branchiness), which determined the cover of sessile organisms on rubble pieces, which shaped the motile cryptofauna community. Rubble is likely to be increasingly prevalent on coral reefs in the Anthropocene and is typically associated with low seascape‐level complexity and reduced macrofaunal richness. Parallel with hierarchical structuring theory, we showed a similar response operating at the microhabitat scale whereby low rubble complexity (i.e., branchiness) reduced cryptobenthic structure, diversity and size spectra. In a future ocean, we expect there may be an initial increase in biodiversity and trophodynamic processes derived from branching rubble, but a delay in ecosystem‐scale outcomes if coral, and thus rubble, generation and complexity is not sustained.

Habitat scale and seasonality influence macroinvertebrate functional feeding groups in a tropical Kenyan montane stream

Habitat quality and diversity strongly influence the composition of macroinvertebrate communities in lotic ecosystems. We evaluated the functional organization of macroinvertebrates in response to changes in habitat type and seasonality in the Afromontane Moiben River in western Kenya. In-stream substrate characteristics were evaluated at the reach, channel unit/habitat and microhabitat scales at nine sites in different land-use areas. Water and habitat quality were assessed during the dry (January–March) and wet (April–June) seasons. A total of 81 macroinvertebrate samples were collected every month from three channel units (pools, riffles and runs) defined by different substrate types and classified into five functional feeding groups (FFGs): collector-filterers, collector-gatherers, predators, scrapers and shredders. Numerical abundance differed significantly between FFGs, with gatherers > filterers > predators > scrapers > shredders. Coarse substrate (bedrock, boulders and cobbles) in riffles had the highest richness and abundance of filterers and scrapers while sand, mud and detritus in pools recorded the lowest richness and abundance. Shredders and scrapers occurred predominantly in upstream sites with minimal human disturbance, while gatherers were most abundant at disturbed sites. The greatest variability in FFGs was at the smallest microhabitat scale, and not at the reach scale. This study shows that attention should be given to both reach-scale and in-stream disturbances when assessing the ecological condition of streams and rivers.

Impact of the local environmental factors associated to plant-fungi communities on the conservation of Liparis loeselii (L.) Rich. In the French Rhône-Alpes region

The fen orchid (Liparis loeselii (L.) Rich., 1817), specific to calcareous wetlands, is threatened by its habitat degradation and disappearance. It is thus categorised as endangered in the Rhône-Alpes red list and is nationally protected in France. Although many studies have been conducted about Liparis loeselii var. ovata ecology in the coastal zone, few have focused on the loeselii variety growing in continental marshes. Now this variety's ecology must be better known in order to determine efficient conservation actions, especially when using ecological restoration in marshes.The aim of this study is to characterise ecological factors that explain the state of loeselii variety populations in the French Rhône-Alpes region. The conservation state of 13 wetlands populations were related to plant and fungal communities as well as local environmental factors (e.g. hydrology, soil, management). These relationships were pinpointed by mixed models and multivariate analyses comparing community structures that depend on Liparis loeselii presence and the scale of study.Our results suggest that engineer species are structuring the marsh, creating a hilly micro-topography which is important to L. loeselii, inducing specific plant communities. At the micro-habitat scale, moss bulges are a favourable support to fen orchid development. Furthermore, a constant water supply in wetlands during the season is essential to its growth whereas high temperature explain low occurrence frequency or disappearance of this orchid in some study sites.This study highlights the dual negative effects of climate change on Liparis loeselii: increasing temperatures and changing rainfall patterns. These two causes induce a synergistic drop in the water table with strong consequences on the conservation status of Liparis populations.