A relationship between the melanoma-related pigmentation gene melanocortin 1 receptor (MC1R) and Parkinson's disease (PD) has been previously suggested. The present study aims to investigate the gene expression pattern in the ventral midbrain (VMB) of MC1R extension (MC1Re/e) mice to provide insights into the underlying mechanism of dopaminergic neuron loss in these mice. RNA sequencing (RNA-seq) was conducted on VMB tissues from MC1Re/e mice and their wild-type (WT) C57BL/6J littermates. Gene expression levels and pathway activity were assessed using differential gene expression analysis, Gene Ontology (GO) analysis, Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis and Gene Set Enrichment Analysis (GSEA). To validate the RNA-seq results, RT-qPCR, WB and ELISA were performed. Our analyses found significant transcriptomic differences in the VMB between MC1Re/e mice and WT controls. Several immune response-related pathways were identified to be downregulated in the MC1Re/e group. Angiogenin (ANG) was implicated in several of the enriched pathways in MC1Re/e mice. Furthermore, ANG was found to be significantly downregulated in the VMB of MC1Re/e mice, which was confirmed at both mRNA and protein levels. There was no significant difference in ANG protein levels in the serum of MC1Re/e and WT mice. Our results suggest a differential gene expression pattern in the VMB as a result of MC1R mutation. Notably, lower ANG expression may be involved in the neuronal loss observed in the VMB of the MC1Re/e mice.
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