Large Bond Distances Research Articles

Short Didysprosium Covalent Bond Enables High Magnetization Blocking Temperature of a Direct 4f-4f Coupled Dinuclear Single-Molecule Magnet.

Coupling two magnetic anisotropic lanthanide ions via a direct covalent bond is an effective way to realize high magnetization blocking temperature of single-molecule magnets (SMMs) by suppressing quantum tunneling of magnetization (QTM), whereas so far only single-electron lanthanide-lanthanide bonds with relatively large bond distances are stabilized in which coupling between lanthanide and the single electron dominates over weak direct 4f-4f coupling. Herein, we report for the first time synthesis of short Dy(II)-Dy(II) single bond (3.61 Å) confined inside a carbon cage in the form of an endohedral metallofullerene Dy2@C82. Such a direct Dy(II)-Dy(II) covalent bond renders a strong Dy-Dy antiferromagnetic coupling that effectively quenches QTM at zero magnetic field, thus opening up magnetic hysteresis up to 25 K using a field sweep rate of 25 Oe/s, concomitant with a high 100 s magnetization blocking temperature (TB,100s) of 27.2 K.

New insights into pertinent Fe-complexes for the synthesis of iron via the instant polyol process.

Chemically synthesized iron is in demand for biomedical applications due to its large saturation magnetization compared to iron oxides. The polyol process, suitable for obtaining Co and Ni particles and their alloys, is laborious in synthesizing Fe. The reaction yields iron oxides, and the reaction pathway remains unexplored. This study shows that a vicinal polyol, such as 1,2-propanediol, is suitable for obtaining Fe rather than 1,3-propanediol owing to the formation of a reducible Fe intermediate complex. X-ray absorption spectroscopy analysis reveals the ferric octahedral geometry and tetrahedral geometry in the ferrous state of the reaction intermediates in 1,2-propanediol and 1,3-propanediol, respectively. The final product obtained using a vicinal polyol is Fe with a γ-Fe2O3 shell, while the terminal polyol is favourable for Fe3O4. The distinct Fe-Fe and Fe-O bond lengths suggest the presence of a carboxylate group and a terminal alkoxide ligand in the intermediate of 1,2-propanediol. A large Fe-Fe bond distance suggests diiron complexes with bidentate carboxylate bridges. Prominent high-spin and low-spin states indicate the possibility of transition, which favors the reduction of iron ions in the reaction using 1,2-propanediol.

Interatomic Coulombic decay in Neon–Helium cluster: a complex absorbing potential based equation-of-motion coupled cluster investigation

ABSTRACT The interatomic Coulombic decay (ICD) of the and states in neon–helium dimer is studied using highly accurate complex absorbing potential based equation-of-motion coupled cluster (CAP-EOMCC) method. The ICD decay process for the state in neon–helium dimer is closed at its equilibrium bond distance. However, the decay channel is open at large bond distance of 6.2 Å. The decay channel for the double ionised state is open at 3.46 Å. From our calculations, we have noticed that the decay rate of state in neon–helium dimer is four times faster compared to the state. We have also investigated how the decay rate of state in neon–helium cluster varies in the presence of different helium environment.

Crystal Chemistry and Structural Variations for Zircon Samples from Various Localities

This study investigates the variations of structural parameters and chemistry of a partially metamict and seven detrital zircon samples from different localities using single-crystal X-ray diffraction, synchrotron high-resolution powder X-ray diffraction, and electron-probe micro-analysis techniques. The unit-cell parameters for the eight zircon samples vary linearly with increasing unit-cell volume, V. A zircon sample from the Canadian Arctic Islands has the smallest unit-cell parameters, bond distances, ideal stoichiometric composition, unaffected by α-radiation damage, and is chemically pure. A zircon sample from Jemaa, Nigeria has the largest unit-cell parameters because of the effect of α-radiation doses received over a long time (2384 Ma). All the samples show good correlations between Zr and Si apfu (atom per formula unit) versus unit-cell volume, V. The α-radiation doses in the samples are lower than ~3.5 × 1015 α-decay events/mg. Substitutions of other cations at the Zr and Si sites control the variations of the structural parameters. Relatively large unit-cell parameters and bond distances occur because the Zr site accommodates other cations that have larger ionic radii than the Zr atom. Geological age increases the radiation doses in zircon and it is related to V.

Temperature effects on structure: Six-coordinate [Fe(TPP)(1-MeIm)(CO)

We have examined the effects of changing the temperature on the structure of a six-coordinate (tetraphenylporphinato)iron(II) complex, [Fe(TPP)(1-MeIm)(CO)] C[Formula: see text]H[Formula: see text]. In particular, we examined whether the coordination group parameters, [Formula: see text]. the Fe–C and C–O parameters showed any effects. The study, carried out between 100 and 330 K, revealed no effect on those coordination group parameters. The axial Fe–N(Im) bond distance showed a small effect. The peripheral phenyl groups show a somewhat larger bond distance effect with bond distance increases of 0.02 to 0.03 Å. The population of the disordered solvent molecule favors one site as the temperature is lowered.

Compression of Spin-Adapted Multiconfigurational Wave Functions in Exchange-Coupled Polynuclear Spin Systems.

We present a protocol based on unitary transformations of molecular orbitals to reduce the number of nonvanishing coefficients of spin-adapted configuration interaction expansions. Methods that exploit the sparsity of the Hamiltonian matrix and compactness of its eigensolutions, such as the full configuration interaction quantum Monte Carlo (FCIQMC) algorithm in its spin-adapted implementation, are well suited to this protocol. The wave function compression resulting from this approach is particularly attractive for antiferromagnetically coupled polynuclear spin systems, such as transition-metal cubanes in biocatalysis, and Mott and charge-transfer insulators in solid-state physics. Active space configuration interaction calculations on N2 and CN– at various bond lengths, the stretched square N4 compounds, the chromium dimer, and a [Fe2S2]2– model system are presented as a proof-of-concept. For the Cr2 case, large and intermediate bond distances are discussed, showing that the approach is effective in cases where static and dynamic correlations are equally important. The [Fe2S2]2– case shows the general applicability of the method.

Unusually Distorted Pseudo-Octahedral Coordination Environment Around CoII from Thioether Schiff Base Ligands in Dinuclear [CoLn] (Ln = La, Gd, Tb, Dy, Ho) Complexes: Synthesis, Structure, and Understanding of Magnetic Behavior.

The synthesis, structural characterization, and magnetic behavior of a new family of binuclear CoII-LnIII complexes of formula [LnIIICoIIL2(NO3)3]·H2O (Ln = La, 1; Gd, 2; Tb, 3; Dy, 4; Ho, 5; HL = 3-methoxy-N-(2-(methylsulfanyl)phenyl)salicylaldimine) have been reported. The chosen ligand system HL has adjacent soft ONS and hard OO binding pockets ideal for selective coordination of CoII and 4f metal ions. All the complexes 1-5 exhibit a CoII center in a highly distorted octahedral geometry with the LnIII centers in bicapped square-antiprism geometry. The unique distortion about the CoII center is introduced by the coordination of 4f metal ions in the hard OO coordination site. The distortion is further supported by the presence of -SMe groups giving an S donor atom which owing to its larger size can support large bond distances and angles. The geometry around the CoII centers is intermediate between meridional and facial geometric isomers. The magnetic properties of these complexes have been investigated by a "full model" approach using CONDON with the experimental magnetochemical analysis revealing ferromagnetic Co-Ln coupling in compounds 2-5. Ab initio calculations on the X-ray crystal structures of 1-5 paint a semiquatitative picture about the contribution of the individual anisotropic centers toward the overall magnetic properties of the compounds. Theoretical analysis predicts 1 and 2 as weak single-ion magnet (SIM) and single-molecule magnet (SMM) respectively with CoII being solely responsible for the complex anisotropy. In 2, JCoGd plays a crucial role in preserving the anisotropy contribution of Co by channelizing relaxation via a higher excited exchange doublet. Because of the inefficiency of JCoTb, JCoDy, and JCoHo in quenching single-ion Ln fragment transverse anisotropy and preserving CoII high axial anisotropy (favoring rhombicity), 3-5 lack SMM behavior.

Strictly-correlated-electron approach to excitation energies of dissociating molecules

In this work we consider a numerically solvable model of a two-electron diatomic molecule to study a recently proposed approximation based on the density functional theory of so-called strictly correlated electrons (SCE). We map out the full two-particle wave function for a wide range of bond distances and interaction strengths and obtain analytic results for the two-particle states and eigenenergies in various limits of strong and weak interactions, and in the limit of large bond distance. We then study the so-called Hartree-exchange-correlation (Hxc) kernel of time-dependent density functional theory which is a key ingredient in calculating excitation energies. We study an approximation based on adiabatic SCE (ASCE) theory which was shown to display a particular feature of the exact Hxc kernel, namely, a spatial divergence as function of the bond distance. This makes the ASCE kernel a candidate for correcting a notorious failure of the commonly used adiabatic local density approximation (ALDA) in the calculation of excitation energies of dissociating molecules. Unlike the ALDA, we obtain nonzero excitation energies from the ASCE kernel in the dissociation regime but they do not correspond to those of the true spectrum unless the interaction strength is taken to be very large such that the SCE theory has the right regime of validity, in which case the excitation energies become exact and represent the so-called zero-point oscillations of the strictly correlated electrons. The commonly studied physical dissociation regime, namely, large molecular separation at intermediate interaction strength, therefore remains a challenge for density functional approximations based on SCE theory.

Locally coupled open subsystems: A formalism for affordable electronic structure calculations featuring fractional charges and size consistency.

This manuscript introduces a methodology (within the Born-Oppenheimer picture) to compute electronic ground-state properties of molecules and solids/surfaces with fractionally occupied components. Given a user-defined division of the molecule into subsystems, our theory uses an auxiliary global Hamiltonian that is defined as the sum of subsystem Hamiltonians, plus the spatial integral of a second-quantized local operator that allows the electrons to be transferred between subsystems. This electron transfer operator depends on a local potential that can be determined using density functional approximations and/or other techniques such as machine learning. The present framework employs superpositions of tensor-product wave functions, which can satisfy size consistency and avoid spurious fractional charges at large bond distances. The electronic population of each subsystem is in general a positive real number and is obtained from wave-function amplitudes, which are calculated by means of ground-state matrix diagonalization (or matrix propagation in the time-dependent case). Our method can provide pathways to explore charge-transfer effects in environments where dividing the molecule into subsystems is convenient and to develop computationally affordable electronic structure algorithms.

Modeling the Transition State Structures of the Reductive-Half Reaction Active Site of Xanthine Oxidase Bound to Guanine Analogues: A Density Functional Theory Approach

Modeling and characterization the transition state structure of enzyme catalyzed reactions is essential. A DFT method employing B3LYP level of theory with 6-31G (d',p') basis set for non-metals and LanL2DZ basis set for molybdenum have been used. The bond orders of chemical fragments were calculated using AOmix softaware. The effect of chalcogen replacement, amine group and methyl group in the parent structure of xanthine bound to xanthine oxidase active site were compared. The transition state structure of model substrates (2AX, 2A6TP, 2A6SP and 2A6MP) bound to the truncated form of XO active site has been confirmed by the presence of one negative imaginary frequencies (s-1) (-60), (-140), (-230) and (-270), respectively. The corresponding normalized energy barriers (kcal/mol) from pre-transition state to the transition state, respectively, are (13.869), (21.753), (23.109) and (0.212). In this work, 2A6SP and 2A6TP substrates were found to be potential xanthine oxidase inhibitors. The large bond distances and minimum bond order for CRH-HRH bond, and small bond distances and maximum bond order for SMo-HRH bond at the transition state for chalcogen replaced 2AX confirms early transition state structure. Methyl substituted 2AX analog found to have post transition state structure. A potential xanthine oxidase inhibitor can be designed from purine family enzymes using DFT approach.

Observation and Identification of an Atomic Oxygen Structure on Catalytic Gold Nanoparticles.

Interactions between oxygen and gold surfaces are fundamentally important in diverse areas of science and technology. In this work, an oxygen dimer structure was observed and identified on gold nanoparticles in catalytic decomposition of hydrogen peroxide to oxygen and water. This structure, which is different from isolated atomic or molecular oxygen surface structures, was observed with in situ surface-enhanced Raman spectroscopic measurements and identified with density functional theory calculations. The experimental measurements were performed using monodisperse 5, 50 and 400 nm gold particles supported on silica with liquid-phase hydrogen and deuterium peroxides at multiple pH values. The calculations show that on surfaces with coordinatively unsaturated gold atoms, two oxygen atoms preferentially share a gold atom with a bond distance of 0.194-0.196 nm and additionally bind to two other surface gold atoms with a larger bond distance of 0.203-0.213 nm, forming an Au-O-Au-O-Au structure. The formation of this structure depends on reaction rates and conditions.

Metal(II) Complexes of Compartmental Polynuclear Schiff Bases Containing Phenolate and Alkoxy Groups

Five mono-nuclear Cu(II) and Ni(II) complexes and one dinuclear Zn(II) complex were synthesized from the Schiff bases N,N'-bis(3-ethoxy-2-hydroxybenzylidene)-1,2-phenylenediamine (H2LOEt-phda) and 2-ethoxy-6-({2-[(3-ethoxy-2-hydroxybenzylidene)amino]-benzyl}iminomethyl)phenol (H2LOEt-ambza): [Cu(LOEt-phda)(H2O)].H2O (1), [Ni(LOEt-phda)].H2O (2), [Cu(LOEt-ambza)].H2O·EtOH (3), [Cu(LOEt-ambza)].H2O (4), [Ni(LOEt-ambza)] (5) and [Zn2(LOEt-ambza)(μ-OAc)(OAc)] (6). The complexes were structurally characterized with elemental microanalyses, IR, UV-Vis and ESI-MS spectroscopic techniques as well as single crystal X-ray crystallography. The metal centers display distorted square planar geometries in 2–4 and 5 and distorted square pyramidal (SP) in 1, whereas in 6 an intermediate geometry between SP and TBP was observed around the first Zn2+ ion and a tetrahedral around the second ion, with one acetate is acting as a bridging ligand. In all cases, metal ions were incorporated into the N2-O2 binding site with no involvement of the alkoxy groups in the coordination. The LOEt-ambza-complexes 3–6 revealed significant dihedral angles between the phenol rings and the plane containing the central benzene ring, and large O2-O2 bond distances (5.1-5.9 Ǻ). Results are discussed in relation to other related Schiff base complexes.

Interplay of force constants in the lattice dynamics of disordered alloys: Anab initiostudy

A reliable prediction of interatomic force constants in disordered alloys is an outstanding problem. This is due to the need for a proper treatment of multisite (atleast pair) correlation within a random environment. The situation becomes even more challenging for systems with large difference in atomic size and mass. We propose a systematic density functional theory (DFT) based study to predict the ab-initio force constants in random alloys. The method is based on a marriage between special quasirandom structures (SQS) and the augmented space recursion (ASR) to calculate phonon spectra, density of states (DOS) etc. bcc TaW and fcc NiPt alloys are considered as the two distinct test cases. Ta-Ta (W-W) bond distance in the alloy is predicted to be smaller (larger) than those in pure Ta (W), which, in turn, yields stiffer (softer) force constants for Ta (W). Pt-Pt force constants in the alloy, however, are predicted to be softer compared to Ni-Ni, due to a large bond distance of the former. Our calculated force constants, phonon spectra and DOS are compared with experiments and other theoretical results, wherever available. Correct trend of present results for the two alloys pave a path for further future studies in more complex alloy systems.

Unveiling the origin of oxygen atomic impurities in Au nanowires

The appearance of unusually large Au-Au bond distances in linear atomic chains (LACs) of Au nanowires is commonly attributed to the presence of atomic impurities. However, the origin of those contaminants is unknown. We present a study based on density functional theory calculations using quasistatic ($T=0$) and finite-temperature ab initio molecular-dynamics simulations of a possible route for the formation of atomic impurities in Au nanowires. This process starts with the adsorption of an O${}_{2}$ molecule followed by a CO molecule on Au LACs, leading to the formation of an intermediate O${}_{2}$CO complex. Upon thermal activation at finite temperatures, the complex is able to proceed to oxidation forming a CO${}_{2}$ molecule and leaving an atomic O impurity in the Au LAC.

TD-DFT insight into photodissociation of the Co-C bond in coenzyme B12.

Coenzyme B12 (AdoCbl) is one of the most biologically active forms of vitamin B12, and continues to be a topic of active research interest. The mechanism of Co-C bond cleavage in AdoCbl, and the corresponding enzymatic reactions are however, not well understood at the molecular level. In this work, time-dependent density functional theory (TD-DFT) has been applied to investigate the photodissociation of coenzyme B12. To reduce computational cost, while retaining the major spectroscopic features of AdoCbl, a truncated model based on ribosylcobalamin (RibCbl) was used to simulate Co-C photodissociation. Equilibrium geometries of RibCbl were obtained by optimization at the DFT/BP86/TZVP level of theory, and low-lying excited states were calculated by TD-DFT using the same functional and basis set. The calculated singlet states, and absorption spectra were simulated in both the gas phase, and water, using the polarizable continuum model (PCM). Both spectra were in reasonable agreement with experimental data, and potential energy curves based on vertical excitations were plotted to explore the nature of Co-C bond dissociation. It was found that a repulsive 3(σCo−C → σ*Co−C) triplet state became dissociative at large Co-C bond distance, similar to a previous observation for methylcobalamin (MeCbl). Furthermore, potential energy surfaces (PESs) obtained as a function of both Co-CRib and Co-NIm distances, identify the S1 state as a key intermediate generated during photoexcitation of RibCbl, attributed to a mixture of a metal-to-ligand charge transfer (MLCT) and a σ bonding-ligand charge transfer (SBLCT) states.

Electronic Structure and Crystal Structure of Multiferroic o-YMnO3 at High Temperature

The dependence of the electronic structure and crystal structure of multiferroic YMnO3 in an orthorhombic phase (o-YMnO3) on temperature up to 873 K was investigated on combining the measurements of synchrotron x-ray powder diffraction (SXRD) and high-resolution x-ray absorption spectra measured in the partial fluorescence yield. Based on SXRD refinement, the small equatorial bond distance (Mn–O2)s of o-YMnO3 increases progressively, whereas the large equatorial bond distance (Mn–O2)l decreases with increasing temperature. The Mn–O–Mn angle of two adjacent MnO6 octahedra increases monotonically with increasing temperature. Based on these SXRD results, the local Jahn–Teller (JT) distortion of Mn sites within MnO6 octahedra of o-YMnO3 became suppressed, and the adjacent JT-distorted MnO6 octahedra became progressively symmetric with increasing temperature. The white-line profile of Mn \(K\)-edge spectra becomes more symmetric, originating from the suppression of the Jahn–Teller distortion of MnO6 octahedra ...

Noncollinear Spin States for Density Functional Calculations of Open-Shell and Multi-Configurational Systems: Dissociation of MnO and NiO and Barrier Heights of O3, BeH2, and H4

When the spins of molecular orbitals are allowed to be aligned with different directions in space rather than being aligned collinearly, the resulting noncollinear spin orbitals add extra flexibility to variational optimization of the orbitals, and solutions obtained with collinear spin orbitals may be unstable with respect to becoming noncollinear in the expanded variational space. The goal of the present work is to explore whether and in what way the molecular orbitals of the Kohn-Sham density functional theory become noncollinear when fully optimized for multi-reference molecules, transition states, and reaction paths. (We note that a noncollinear determinant has intermediate flexibility between a collinear determinant and a linear combination of many collinear determinants with completely independent coefficients. However, the Kohn-Sham method is defined to involve the variational optimization of a single determinant, and a noncollinear determinant represents the limit of complete optimization in the Kohn-Sham scheme.) We compare the results obtained with the noncollinear Kohn-Sham (NKS) scheme to those obtained with the widely used unrestricted Kohn-Sham (UKS) scheme for two types of multi-reference systems. For the dissociation of the MnO and NiO transition metal oxides, we find UKS fails to dissociate to the ground states of neutral atoms, while NKS dissociates to the correct limit and predicts potential energy curves that vary smoothly at intermediate bond lengths. This is due to the instability of UKS solutions at large bond distances. For barrier heights of O3, BeH2, and H4, NKS is shown to stabilize the multi-reference transition states by expanding the variational space. Although the errors vary because they are closely coupled with the capability of the employed exchange-correlation functionals in treating the multi-configurational states, these findings demonstrate that results with collinear spin orbitals should be further scrutinized, and future development of exchange-correlation functionals for multi-reference systems should incorporate the flexibilities of NKS.

Helium clusters and droplets: microscopic superfluidity and other quantum effects†

Many microscopic properties of the only natural superfluid element helium have become available within the last 18 years through a number of novel experiments. The diffraction of matter-waves of small helium clusters has established the unusually large bond distance (5.2 nm) and extremely weak binding energy (10−7 eV) of the dimer and other exotic properties of small helium clusters. The high-resolution spectroscopy of closed-shell chromophore molecules attached to small clusters or embedded inside large superfluid droplets have revealed that as a result of superfluidity, molecules rotate virtually without friction and that only a handful of He atoms are required for microscopic superfluidity. The frictionless translational motion of atoms and molecules inside the droplets has also been observed. These and a number of other experiments demonstrate that helium droplets are the most gentle and coldest of all cryomatrices with enormous potential for a wide range of future applications.

Ab initio study of the positronation of the CaO and SrO molecules including calculation of annihilation rates

Ab initio multireference single- and double-excitation configuration interaction calculations have been performed to compute potential curves for ground and excited states of the CaO and SrO molecules and their positronic complexes, e(+)CaO, and e(+)SrO. The adiabatic dissociation limit for the (2)Σ(+) lowest states of the latter systems consists of the positive metal ion ground state (M(+)) and the OPs complex (e(+)O(-)), although the lowest energy limit is thought to be e(+)M + O. Good agreement is found between the calculated and experimental spectroscopic constants for the neutral diatomics wherever available. The positron affinity of the closed-shell X (1)Σ(+) ground states of both systems is found to lie in the 0.16-0.19 eV range, less than half the corresponding values for the lighter members of the alkaline earth monoxide series, BeO and MgO. Annihilation rates (ARs) have been calculated for all four positronated systems for the first time. The variation with bond distance is generally similar to what has been found earlier for the alkali monoxide series of positronic complexes, falling off gradually from the OPs AR value at their respective dissociation limits. The e(+)SrO system shows some exceptional behavior, however, with its AR value reaching a minimum at a relatively large bond distance and then rising to more than twice the OPs value close to its equilibrium distance.

Excellent red phosphors of double perovskite Ca 2La MO 6:Eu ( M=Sb, Nb, Ta) with distorted coordination environment

Double perovskite Ca 2LaSbO 6, successfully synthesized by solid state reaction method, was identified by Rietveld refinements to crystallize in the monoclinic space group P2 1/ n, which is isostructural to Ca 2La MO 6 ( M=Nb, Ta). Excellent red luminescence of Eu-doped Ca 2La MO 6 ( M=Sb, Nb, Ta) can be obtained and no luminescence quenching effect was observed when Eu-doping level reached 40%. For Ca 2La 0.6NbO 6:0.4Eu 3+, quantum efficiencies of 20.9% and 27.7% were reached to show high light conversion and bright red emission excited at 465 nm (blue light) and 534 nm (green light), respectively, comparable to the commercial phosphors. Through systemic investigation for the series of double perovskite compounds, the excellent red emission in Ca 2LaMO 6 is attributed to highly distorted polyhedra of EuO 8 (low tolerance factor of the pervoskite), and large bond distances of La−O (low crystal field effect of the activator).