Intermolecular Rearrangement Research Articles

60 Years of Betaine 30─From Solvatochromic Discovery to Future Frontiers.

Betaine-30 (B30) was reported by Karl Dimroth and Christian Reichardt et al. in 1963 as a solvatochromic probe that can be easily synthesized, shows good solubility, and remains stable in various organic solvents and solutions. Its strongly negatively solvatochromic behavior arises from differential solvation between its electronic ground and excited states, making it a valuable tool for assessing solvent polarity using the ET(30) polarity scale, also devised by Dimroth and Reichardt. In addition, advancements in femtosecond laser spectroscopy in the 1990s greatly improved the understanding of B30's relaxation dynamics following photoexcitation. In solvents capable of hydrogen bonding, such as alcohols, intermolecular hydrogen-bond rearrangement contributes to the multiple relaxation components observed. Since the 1990s, the applications of B30 have expanded beyond simple organic solvents to include complex solvent mixtures, such as electrolyte solutions for battery technologies and eutectic solvent mixtures. Given the growing importance of these complex solvent mixtures, B30 is becoming an increasingly valuable tool for studying previously unexplored solvation properties.

High-capacity dilithium hydroquinone cathode material for lithium-ion batteries.

Lithiated organic cathode materials show great promise for practical applications in lithium-ion batteries owing to their Li-reservoir characteristics. However, the reported lithiated organic cathode materials still suffer from strict synthesis conditions and low capacity. Here we report a thermal intermolecular rearrangement method without organic solvents to prepare dilithium hydroquinone (Li2Q), which delivers a high capacity of 323 mAh g-1 with an average discharge voltage of 2.8V. The reversible conversion between orthorhombic Li2Q and monoclinic benzoquinone during charge/discharge processes is revealed by in situ X-ray diffraction. Theoretical calculations show that the unique Li-O channels in Li2Q are beneficial for Li+ ion diffusion. In situ ultraviolet-visible spectra demonstrate that the dissolution issue of Li2Q electrodes during charge/discharge processes can be handled by separator modification, resulting in enhanced cycling stability. This work sheds light on the synthesis and battery application of high-capacity lithiated organic cathode materials.

A Holistic Review of C = C Crosslinkable Conjugated Molecules in Solution-Processed Organic Electronics: Insights into Stability, Processibility, and Mechanical Properties.

Solution-processable organic conjugated molecules (OCMs) consist of a series of aromatic units linked by σ-bonds, which present a relatively freedom intramolecular motion and intermolecular re-arrangement under external stimulation. The cross-linked strategy provides an effective platform to obtain OCMs network, which allows for outstanding optoelectronic, excellent physicochemical properties, and substantial improvement in device fabrication. An unsaturated double carbon-carbon bond (C = C) is universal segment to construct crosslinkable OCMs. In this review, the authors will set C = C cross-linkable units as an example to summarize the development of cross-linkable OCMs for solution-processable optoelectronic applications. First, this review provides a comprehensive overview of the distinctive chemical, physical, and optoelectronic properties arising from the cross-linking strategies employed in OCMs. Second, the methods for probing the C = C cross-linking reaction are also emphasized based on the perturbations of chemical structure and physicochemical property. Third, a series of model C = C cross-linkable units, including styrene, trifluoroethylene, and unsaturated acid ester, are further discussed to design and prepare novel OCMs. Furthermore, a concise overview of the optoelectronic applications associated with this approach is presented, including light-emitting diodes (LEDs), solar cells (SCs), and field-effect transistors (FETs). Lastly, the authors offer a concluding perspective and outlook for the improvement of OCMs and their optoelectronic application via the cross-linking strategy.

Computational Study of the Fries Rearrangement Catalyzed by Acyltransferase from Pseudomonas protegens.

The acyltransferase from Pseudomonas protegens (PpATase) catalyzes in nature the reversible transformation of monoacetylphloroglucinol to diacetylphloroglucinol and phloroglucinol. Interestingly, this enzyme has been shown to catalyze the promiscuous transformation of 3-hydroxyphenyl acetate to 2',4'-dihydroxyacetophenone, representing a biological version of the Fries rearrangement. In the present study, we report a mechanistic investigation of this activity of PpATase using quantum chemical calculations. A detailed mechanism is proposed, and the energy profile for the reaction is presented. The calculations show that the acylation of the enzyme is highly exothermic, while the acetyl transfer back to the substrate is only slightly exothermic. The deprotonation of the C6-H of the substrate is rate-limiting, and a remote aspartate residue (Asp137) is proposed to be the general base group in this step. Analysis of the binding energies of various acetyl acceptors shows that PpATase can promote both intramolecular and intermolecular Fries rearrangement towards diverse compounds.

Unraveling the nano-cracking mechanism in aged asphalt binder with consideration of rejuvenation effects

For achieving the sustainable utilization of reclaimed asphalt pavement, a popular approach is to incorporate rejuvenators to restore the cracking resistance of aged asphalt. However, research on the nanoscale rejuvenation mechanisms and the relationship with the cracking behavior is limited. To address this challenge, this study utilizes molecular dynamics simulations to explore the fundamental cracking mechanism in aged asphalt and elucidate how rejuvenators affect this process. A multiphysics analysis, including mechanical response, morphology relationship, energy evolution, deagglomeration and lubrication behavior is developed to comprehend the nano-cracking mechanism. Computational findings reveal that the cracking failure originates form cavitation, and the process primarily includes nanovoid formation, enlargement, filamentation, and separation. Oxidation enhances the aggregation of asphaltene molecules and reduces intermolecular rearrangement and mobility, which fundamentally accelerates the nano-cracking process. Owing to the diffusion of rejuvenators and their disturbances to asphaltene π-π stacking, rejuvenators can penetrate into aged asphalt molecules, lubricate and reduce intermolecular friction. This facilitates molecular rearrangement during the cracking process, thereby improving the cracking resistance and energy performance of aged asphalt binder. The finding from this study contributes to elucidating the fundamental cracking mechanism in rejuvenated asphalt binder and promoting the sustainable utilization of recycled pavement materials.

Synthesis of Polysubstituted Furans via Rh(II)-Catalyzed [2 + 3] Annulation of N-Sulfonyl-1,2,3-triazoles with Enaminones.

An unprecedented [2 + 3] annulation of N-sulfonyl-1,2,3-triazoles with enaminones is reported for the access of polysubstituted furans. The key to the success of the transformations lies in the use of Rh(II)-Brønsted acid as cooperative catalysts. Unlike the conventional annulations of N-sulfony-l-1,2,3-triazoles, the Rh(II)-azavinyl carbenes species play dual functions in this work, enabled by the cleavage of the C(sp2)-N bond. The mechanism studies suggested that an intermolecular rearrangement of the TsNH- group is crucial to the annulation process.

Strain-Driven Solid-Solid Crystal Conversion in Chiral Hybrid Pseudo-Perovskites with Paramagnetic-to-Ferromagnetic Transition.

Hybrid organic-inorganic perovskites (HOIPs) are promising stimuli-responsive materials (SPMs) owing to their molecular softness and tailorable structural dimensionality. The design of mechanically responsive HOIPs requires an in-depth understanding of how lattice strain induces intermolecular rearrangement that impacts physical properties. While chirality transfer from an organic cation to an inorganic lattice is known to influence chiral-optical properties, its effect on strain-induced phase conversion has not been explored. As opposed to achiral or racemic organic cations, chiral organic cations can potentially afford a new dimension in strain-responsive structural change. Herein, we demonstrate that mechanical strain induces a solid phase crystal conversion in chiral halide pseudo-perovskite single crystals (R/S)-(FE)2CuCl4 (FE = (4-Fluorophenyl)ethylamine) from a 0D isolated CuCl4 tetrahedral to 1D corner-sharing CuFCl5 octahedral framework via the incorporation of Cu···F interaction and N-H···F hydrogen bonding. This strain-induced crystal-to-crystal conversion involves the connection of neighboring 0D CuCl4 tetrahedra via Cu2+-Cl--Cu2+ linkages as well as the incorporation of a F-terminated organic cation as one of the X atoms in BX6 octahedra, leading to a reduced band gap and paramagnetic-to-ferromagnetic conversion. Control experiments using nonchiral or racemic perovskite analogs show the absence of such solid phase conversion. To demonstrate pressure-sensitive properties, the 0D phase is dispersed in water-soluble poly(vinyl alcohol) (PVA) polymer, which can be applied to a large-scale pressure-induced array display on fibrous Spandex substrates via a screen-printing method.

Conformational GPCR BRET Sensors Based on Bioorthogonal Labeling of Noncanonical Amino Acids.

Here we describe the application of genetic code expansion and site-specific incorporation of noncanonical amino acids that serve as anchor points for fluorescent labeling to generate bioluminescence resonance energy transfer (BRET)-based conformational sensors. Using a receptor with an N-terminal NanoLuciferase (Nluc) and a fluorescently labeled noncanonical amino acid in the receptor's extracellular part allows to analyze receptor complex formation, dissociation, and conformational rearrangements over time and in living cells. These BRET sensors can be used to investigate ligand-induced intramolecular (cysteine-rich domain [CRD] dynamics), but also intermolecular (dimer dynamics) receptor rearrangements. With the design of BRET conformational sensors based on the minimally invasive bioorthogonal labeling procedure, we describe a method that can be used in a microtiter plate format and can be easily adopted to investigate ligand-induced dynamics in various membrane receptors.

A highly efficient method to access unprotected C-3 bifunctional quaternary 3-allyl-3-(amino)oxindoles.

A highly efficient Rh(II) catalyzed non-radical protocol to access NH-free C-3 bifunctional oxindoles, which possess 3-allyl and 3-amino simultaneously, was first achieved by employing an intermolecular [2,3]-sigmatropic rearrangement reaction between diazooxindoles and tertiary allylic amines. Utilizing readily available allylamines as the nitrogen and allyl source concurrently, a wide range of bio-active 3-allyl-3-(amino)oxindoles were obtained in excellent yields under very mild reaction conditions; meanwhile, the TON can be up to 90 000. Our study addresses a gap in the literature by investigating intermolecular rearrangements of ammonium ylides with diazoamides, which have been relatively understudied.

Conformational Rearrangements Regulating the DNA Repair Protein APE1.

Apurinic apyrimidinic endonuclease 1 (APE1) is a key enzyme of the Base Excision Repair (BER) pathway, which primarily manages oxidative lesions of DNA. Once the damaged base is removed, APE1 recognises the resulting abasic site and cleaves the phosphodiester backbone to allow for the correction by subsequent enzymes of the BER machinery. In spite of a wealth of information on APE1 structure and activity, its regulation mechanism still remains to be understood. Human APE1 consists of a globular catalytic domain preceded by a flexible N-terminal extension, which might be involved in the interaction with DNA. Moreover, the binding of the nuclear chaperone nucleophosmin (NPM1) to this region has been reported to impact APE1 catalysis. To evaluate intra- and inter-molecular conformational rearrangements upon DNA binding, incision, and interaction with NPM1, we used Förster resonance energy transfer (FRET), a fluorescence spectroscopy technique sensitive to molecular distances. Our results suggest that the N-terminus approaches the DNA at the downstream side of the abasic site and enables the building of a predictive model of the full-length APE1/DNA complex. Furthermore, the spatial configuration of the N-terminal tail is sensitive to NPM1, which could be related to the regulation of APE1.

Exploring CRD mobility during RAS/RAF engagement at the membrane

During the activation of mitogen-activated protein kinase (MAPK) signaling, the RAS-binding domain (RBD) and cysteine-rich domain (CRD) of RAF bind to active RAS at the plasma membrane. The orientation of RAS at the membrane may be critical for formation of the RAS-RBDCRD complex and subsequent signaling. To explore how RAS membrane orientation relates to the protein dynamics within the RAS-RBDCRD complex, we perform multiscale coarse-grained and all-atom molecular dynamics (MD) simulations of KRAS4b bound to the RBD and CRD domains of RAF-1, both in solution and anchored to a model plasma membrane. Solution MD simulations describe dynamic KRAS4b-CRD conformations, suggesting that the CRD has sufficient flexibility in this environment to substantially change its binding interface with KRAS4b. In contrast, when the ternary complex is anchored to the membrane, the mobility of the CRD relative to KRAS4b is restricted, resulting in fewer distinct KRAS4b-CRD conformations. These simulations implicate membrane orientations of the ternary complex that are consistent with NMR measurements. While a crystal structure-like conformation is observed in both solution and membrane simulations, a particular intermolecular rearrangement of the ternary complex is observed only when it is anchored to the membrane. This configuration emerges when the CRD hydrophobic loops are inserted into the membrane and helices α3–5 of KRAS4b are solvent exposed. This membrane-specific configuration is stabilized by KRAS4b-CRD contacts that are not observed in the crystal structure. These results suggest modulatory interplay between the CRD and plasma membrane that correlate with RAS/RAF complex structure and dynamics, and potentially influence subsequent steps in the activation of MAPK signaling.

Lewis acid promoted synthesis of methylene-bridged α-and γ-bis-benzopyrones

The Lewis acid promoted Fries rearrangement of O-methoxyacetyl derivatives of hydroxy-chromanones, coumarins and chromones under solvent-free condition gives isomeric methylene-bridged bischromanones, biscoumarins and bischromones, respectively, in good yields. The benzopyrone precursors undergo intermolecular rearrangement wherein two benzopyrone moieties are joined through their benzene rings via an un-substituted methylene bridge.

Oligo- and polymerization of phospha [2]ferrocenophanes to one dimensional phosphorus chains with ferrocenylene handles

A lithium halide exchange reaction at low-temperature, via the treatment of 2,6-di(isopropyl)phenyllithium on 1,1′-bis-(dichlorophosphino)ferrocene, resulted in the first isolated example of an aryl-substituted diphospha [2]ferrocenophane (diphospha [2]FCP) 2. Although compound 2 did not show any recognizable thermal reaction at higher temperature (up to 350 °C), its tert-butyl-substituted counterpart 1 underwent a clean selective heat-mediated P–C cleavage reaction, followed by an inter-molecular rearrangement, to produce a P–P fused bis [3]ferrocenophane 3 with all-trans oriented P-chain, which upon further heating gave a polyferrocenylphosphane tBu-[Fc'P2]n-tBu (4). Since polymer 4 is insoluble in common organic solvents, it has been characterized with solid-state techniques, including solid-state NMR. Density functional theory (DFT) has further been employed to identify possible pathways for P–C bond cleavage on 1 and 2, as well as to evaluate accessible pathways for further polymerization toward 4.

Ultrafast Excited-State Dynamics of Thiazole Orange.

Thiazole orange (TO), an asymmetric cyanine dye, has been widely used in biomolecular detection and imaging of DNA/ RNA in gels, due to its unique fluorogenic behavior: fluorescence of free dye in aqueous solution is very weak but emission can be significantly enhanced in nucleic-acid-bound dye. Herein we describe the ultrafast excited-state dynamics of free TO in aqueous solution by exploiting both a femtosecond upconversion spectrophotofluorometer and a picosecond time-correlated single-photon counting (TCSPC) apparatus. For the first time, the fluorescence lifetime of TO monomer in water was found to be ∼1 ps, mixed with concurrent solvent relaxation (which was confirmed by the experimental results of TO in DMSO). Even at moderate concentration, this lifetime has an amplitude (a measure of molecular fraction) that significantly dominates other lifetimes, and this is the origin of weak steady state fluorescence of free TO in water. We also found a novel slower decay component around 34 ps. Interestingly and in addition, the lifetime component on the 30-40 ps timescale was also found in TO-γ-Cyclodextrin (CD) complexes. The fraction of this component increased with the addition of γ-CD. Cyclodextrin has been reported to promote the aggregation of TO. Thus, although a very coincidental match of this time constant by one for a torsional process within the cavity can not be ruled out, we ascribe the shared 30-40 ps component to the lifetime of a highly quenched TO dimer experiencing intra-and inter-molecular rearrangement.

One-step novel synthesis of methylene bisphenols and methylene bisnaphthols using Lewis acid mediated rearrangement

Mono- and di-substituted isomeric methylene bisphenols and methylene bisnaphthols have been synthesized by rearrangement of the corresponding O-methoxyacetyl derivatives of phenols and naphthols, respectively, in presence of aluminium chloride under dry conditions. The chemistry observed is different from the usual Fries rearrangement reaction and involves an intermolecular rearrangement. The reactions reported here also reflect the influence of substituents present in the substrate as is supported by the substitution of the bridging methylene at a position meta to the phenolic hydroxyl in some of the minor products formed along-side the majorly formed ortho substituted products.

Understanding how starch constituent in frozen dough following freezing-thawing treatment affected quality of steamed bread

Understanding how starch constituent in frozen dough affected bread quality would be valuable for contributing to the frozen products with better quality. To elucidate the underlying mechanism, starch was fractionated from multiple freezing-thawing (F/T) treated dough and reconstituted with gluten. Results showed that F/T treatment destructed the molecular and supramolecular structures of starch, which were more severe as the F/T cycle increasing. These structural disorganizations made water molecules easier to permeate into the interior of starch granules and form hydrogen bonds with starch molecular chains, which elevated the peak, breakdown, setback and final viscosity of starch paste. In addition, F/T treatment resulted in decreased specific volume (from 1.54 to 0.90 × 103 m3/Kg) and increased hardness (from 42.98 to 52.31 N) for steamed bread. We propose the strengthened water absorption ability and accelerated intra- and inter-molecular rearrangement of starch molecules and weak stability of “starch-gluten matrices” would allow interpreting deteriorated bread quality.

Enabling reprocessability of ENR-based vulcanisates by thermochemically exchangeable ester crosslinks

ABSTRACT A reprocessable elastomeric vulcanisate based on Epoxidised Natural Rubber with 50 mol-% epoxide content (ENR-50) was evloved by applying a self-assembled network based on thermochemically exchangeable ester crosslinks to the system. Hydrolysed Maleic Anhydride (HMA) as crosslinking substance in the presence of 1,2-DiMethylImidazole (DMI) as esterification accelerator and Zinc Acetate Dihydrate (ZAD) as transesterification catalyst was employed to generate the exchangeable ester crosslinking system. A sulphur-cured ENR-50 vulcanisate possessing a permanent sulphide crosslinking network was prepared as reference. Based on the results from cure characteristic and chemical structure analyses, the ENR-50 crosslinked with HMA behaves as a dynamic network because of a transesterification reaction catalysed by ZAD, promoting an exchangeable crosslinking network in the system. This dynamic network contributes to an intermolecular rearrangement of the ester crosslinking bonds at elevated temperatures, enabling interfacial self-adhesion and so reprocessability of the vulcanisates. The obtainable vulcanisates can be reprocessed, yielding relatively high retention of mechanical properties compared to their pristine counterpart. The interfacial self-adhesion and reprocessability of the vulcanisates have shown to significantly be improved with a higher loading of ZAD and elevated temperatures. This concept essentially shows a prospect towards developing e.g. novel recyclable and self-healing systems for elastomers.

Formation of o-Allyl- and Allenyl-Modified Amides via Intermolecular Claisen Rearrangement.

We developed a new transition-metal-free intermolecular Claisen rearrangement process to introduce allyl and allenyl groups into the α position of tertiary amides. In this transformation, amides were activated by trifluoromethanesulfonic anhydride to produce the keteniminium ion intermediates that exhibit strong electrophilic activity. This atom-economical process delivers α position-modified amides under mild conditions in moderate to good yields and showcases a broad substrate compatibility.

New mixed-ligand organoaluminum heteroarylalkenolates

We have successfully synthesized and structurally characterized eight novel aluminum compounds with N,O-β-heteroarylalkenolate ligands (L) containing a CF3 group. The reactions of 3,3,3-trifluoro(dimethyl-1,3-oxazol-2-yl)propen-2-ol (H-DMOTFP), 3,3,3-trifluoro(pyridin-2-yl)propen-2-ol (H-PyTFP), and 3,3,3-trifluoro(1,3-benzthiazol-2-yl)propen-2-ol (H-BTTFP) with chloroalanes R2AlCl and RAlCl2 (R = Et, iBu) in dry aprotic solvents provided complexes displaying several types of molecular structures. Effects of ligand, solvent, and crystallization conditions were investigated. The most common and stable products were chloride complexes [AlCl(L)2] with five-coordinated aluminum centers represented by [AlCl(DMOTFP)2] (1) and [AlCl(PyTFP)2] (2). A six-coordinated aluminum complex with a coordinated THF was obtained as [AlCl(THF)(PyTFP)2] (2⋅THF). Complexes with preserved alkyl groups [AlR(L)2] were isolated as [AlEt(BTTFP)2] (3) and [AliBu(DMOTFP)2] (4). An intermolecular rearrangement led to an ionic complex [Al(PyTFP)2(THF)2][iBuAlCl3] (5). In the reactions of H-BTTFP, the complex 3 with two ligands, as well as molecules [AlRCl(L)] with only one ligand attached were characterized as [AlEtCl(BTTFP)] (6) and [AliBuCl(BTTFP)] (7). The thermal properties of obtained complexes were investigated by TG/DSC and HT/XRD analyses.

Overcoming Fundamental Limitations in Adsorbent Design: Alkene Adsorption by Non-porous Copper(I) Complexes.

Purifying alkenes from alkanes requires cryogenic distillation. This consumes energy equivalent to countries of ca. 5 million people. Replacing distillation with adsorption processes would significantly increase energy efficiency. Trade-offs between kinetics, selectivity, capacity, and heat of adsorption have prevented production of an optimal adsorbent. We report adsorbents that overcome these trade-offs. [Cu-Br]3 and [Cu-H]3 are air-stable trinuclear complexes that undergo reversible solid-state inter-molecular rearrangements to produce dinuclear [Cu-Br⋅(alkene)]2 and [Cu-H⋅(alkene)]2 . The reversible solid-state rearrangement, confirmed in situ using powder X-ray diffraction, allows adsorbent design trade-offs to be overcome, coupling low heat of adsorption (-10 to -17 kJ mol-1alkene ), high alkene:alkane selectivity (47; 29), and uptake capacity (>2.5 molalkene mol-1Cu3 ). Most remarkably, [Cu-H]3 displays fast uptake and regenerates capacity within 10 minutes.