Individual Tree Crown Detection Research Articles

Individual Tree Crown Detection and Classification of Live and Dead Trees Using a Mask Region-Based Convolutional Neural Network (Mask R-CNN)

Mapping the distribution of living and dead trees in forests, particularly in ecologically fragile areas where forests serve as crucial ecological environments, is essential for assessing forest health, carbon storage capacity, and biodiversity. Convolutional neural networks, including Mask R-CNN, can assist in rapid and accurate forest monitoring. In this study, Mask R-CNN was employed to detect the crowns of Casuarina equisetifolia and to distinguish between live and dead trees in the Pingtan Comprehensive Pilot Zone, Fujian, China. High-resolution images of five plots were obtained using a multispectral Unmanned Aerial Vehicle. Six band combinations and derivatives, RGB, RGB-digital surface model (DSM), Multispectral, Multispectral-DSM, Vegetation Index, and Vegetation-Index-DSM, were used for tree crown detection and classification of live and dead trees. Five-fold cross-validation was employed to divide the manually annotated dataset of 21,800 live trees and 7157 dead trees into training and validation sets, which were used for training and validating the Mask R-CNN models. The results demonstrate that the RGB band combination achieved the most effective detection performance for live trees (average F1 score = 74.75%, IoU = 70.85%). The RGB–DSM combination exhibited the highest accuracy for dead trees (average F1 score = 71.16%, IoU = 68.28%). The detection performance for dead trees was lower than for live trees, which may be due to the similar spectral features across the images and the similarity of dead trees to the background, resulting in false identification. For the simultaneous detection of living and dead trees, the RGB combination produced the most promising results (average F1 score = 74.18%, IoU = 69.8%). It demonstrates that the Mask R-CNN model can achieve promising results for the detection of live and dead trees. Our study could provide forest managers with detailed information on the forest condition, which has the potential to improve forest management.

A Review of Individual Tree Crown Detection and Delineation From Optical Remote Sensing Images: Current progress and future

A Review of Individual Tree Crown Detection and Delineation From Optical Remote Sensing Images: Current progress and future

Individual Tree-Crown Detection and Species Identification in Heterogeneous Forests Using Aerial RGB Imagery and Deep Learning

Automatic identification and mapping of tree species is an essential task in forestry and conservation. However, applications that can geolocate individual trees and identify their species in heterogeneous forests on a large scale are lacking. Here, we assessed the potential of the Convolutional Neural Network algorithm, Faster R-CNN, which is an efficient end-to-end object detection approach, combined with open-source aerial RGB imagery for the identification and geolocation of tree species in the upper canopy layer of heterogeneous temperate forests. We studied four tree species, i.e., Norway spruce (Picea abies (L.) H. Karst.), silver fir (Abies alba Mill.), Scots pine (Pinus sylvestris L.), and European beech (Fagus sylvatica L.), growing in heterogeneous temperate forests. To fully explore the potential of the approach for tree species identification, we trained single-species and multi-species models. For the single-species models, the average detection accuracy (F1 score) was 0.76. Picea abies was detected with the highest accuracy, with an average F1 of 0.86, followed by A. alba (F1 = 0.84), F. sylvatica (F1 = 0.75), and Pinus sylvestris (F1 = 0.59). Detection accuracy increased in multi-species models for Pinus sylvestris (F1 = 0.92), while it remained the same or decreased slightly for the other species. Model performance was more influenced by site conditions, such as forest stand structure, and less by illumination. Moreover, the misidentification of tree species decreased as the number of species included in the models increased. In conclusion, the presented method can accurately map the location of four individual tree species in heterogeneous forests and may serve as a basis for future inventories and targeted management actions to support more resilient forests.

Automated extraction of Camellia oleifera crown using unmanned aerial vehicle visible images and the ResU-Net deep learning model.

As one of the four most important woody oil-tree in the world, Camellia oleifera has significant economic value. Rapid and accurate acquisition of C. oleifera tree-crown information is essential for enhancing the effectiveness of C. oleifera tree management and accurately predicting fruit yield. This study is the first of its kind to explore training the ResU-Net model with UAV (unmanned aerial vehicle) images containing elevation information for automatically detecting tree crowns and estimating crown width (CW) and crown projection area (CPA) to rapidly extract tree-crown information. A Phantom 4 RTK UAV was utilized to acquire high-resolution images of the research site. Using UAV imagery, the tree crown was manually delineated. ResU-Net model’s training dataset was compiled using six distinct band combinations of UAV imagery containing elevation information [RGB (red, green, and blue), RGB-CHM (canopy height model), RGB-DSM (digital surface model), EXG (excess green index), EXG-CHM, and EXG-DSM]. As a test set, images with UAV-based CW and CPA reference values were used to assess model performance. With the RGB-CHM combination, ResU-Net achieved superior performance. Individual tree-crown detection was remarkably accurate (Precision = 88.73%, Recall = 80.43%, and F1score = 84.68%). The estimated CW (R2 = 0.9271, RMSE = 0.1282 m, rRMSE = 6.47%) and CPA (R2 = 0.9498, RMSE = 0.2675 m2, rRMSE = 9.39%) values were highly correlated with the UAV-based reference values. The results demonstrate that the input image containing a CHM achieves more accurate crown delineation than an image containing a DSM. The accuracy and efficacy of ResU-Net in extracting C. oleifera tree-crown information have great potential for application in non-wood forests precision management.

Detection of urban tree canopy from very high resolution imagery using an object based classification

<span>Tree that grows within a town, city and suburban areas, collection of these trees makes the urban forest. These urban forest and urban trees have impact on urban water, pollution and heat. Nowadays we are experiencing drastic climatic changes because of cutting of trees for our growth and increasing population which leads to expansion of roads, towers, and airports. Individual tree crown detection is necessary to map the forest along with feasible planning for urban areas. In this study, using WorldView-2imagery, trees in specific area are detected with object-based image analysis (OBAI) approach. Therefore with improvement in spatial and spectral resolution of an image, extracted from WorldView-2 carried out urban features with better accuracy. The aim of this research is to illustrate how object-based method can be applied to the available data to accurately find out vegetation, which can be further sub-classified to obtain area under tree canopy. The result thus obtained gives area under tree canopy with an accuracy of 92.43 % and a Kappa coefficient of 0.80.</span>

Riparian ecosystems mapping at fine scale: a density approach based on multi‐temporal UAV photogrammetric point clouds

AbstractIn recent years, numerous directives worldwide have addressed the conservation and restoration of riparian corridors, activities that rely on continuous vegetation mapping to understand its volumetric features and health status. Mapping riparian corridors requires not only fine‐scale resolution but also the coverage of relatively large areas. The use of Unmanned Aerial Vehicles (UAV) allows for meeting both conditions, although the cost‐effectiveness of their use is highly influenced by the type of sensor mounted on them. Few works have so far investigated the use of photogrammetric sensors for individual tree crown detection, despite being cheaper than the most common Light Detection and Ranging (LiDAR) ones. This work aims to improve the individual crown detection from UAV‐photogrammetric datasets in a twofold way. Firstly, the effectiveness of a new approach that has already achieved interesting results in LiDAR applications was tested for photogrammetric point clouds. The test was carried out by comparing the accuracy achieved by the new approach, which is based on the point density features of the analysed dataset, with those related to the more common local maxima and textural methods. The results indicated the potentiality of the density‐based method, which achieved accuracy values (0.76 F‐score) consistent with the traditional methods (0.49–0.80 F‐score range) but was less affected by under‐ and over‐fitting. Secondly, the potential improvement of working on intra‐annual multi‐temporal datasets was assessed by applying the density‐based approach to seven different scenarios, three of which were constituted by single‐epoch datasets and the remaining given by the joining of the others. The F‐score increased from 0.67 to 0.76 when passing from single‐ to multi‐epoch datasets, aligning with the accuracy achieved by the new method when applied to LiDAR data. The results demonstrate the potential of multi‐temporal acquisitions when performing individual crown detection from photogrammetric data.

How Does Sample Labeling and Distribution Affect the Accuracy and Efficiency of a Deep Learning Model for Individual Tree-Crown Detection and Delineation

Monitoring and assessing vegetation using deep learning approaches has shown promise in forestry applications. Sample labeling to represent forest complexity is the main limitation for deep learning approaches for remote sensing vegetation classification applications, and few studies have focused on the impact of sample labeling methods on model performance and model training efficiency. This study is the first-of-its-kind that uses Mask region-based convolutional neural networks (Mask R-CNN) to evaluate the influence of sample labeling methods (including sample size and sample distribution) on individual tree-crown detection and delineation. A flight was conducted over a plantation with Fokienia hodginsii as the main tree species using a Phantom4-Multispectral (P4M) to obtain UAV imagery, and a total of 2061 manually and accurately delineated tree crowns were used for training and validating (1689) and testing (372). First, the model performance of three pre-trained backbones (ResNet-34, ResNet-50, and ResNet-101) was evaluated. Second, random deleting and clumped deleting methods were used to repeatedly delete 10% from the original sample set to reduce the training and validation set, to simulate two different sample distributions (the random sample set and the clumped sample set). Both RGB image and Multi-band images derived from UAV flights were used to evaluate model performance. Each model’s average per-epoch training time was calculated to evaluate the model training efficiency. The results showed that ResNet-50 yielded a more robust network than ResNet-34 and ResNet-101 when the same parameters were used for Mask R-CNN. The sample size determined the influence of sample labeling methods on the model performance. Random sample labeling had lower requirements for sample size compared to clumped sample labeling, and unlabeled trees in random sample labeling had no impact on model training. Additionally, the model with clumped samples provides a shorter average per-epoch training time than the model with random samples. This study demonstrates that random sample labeling can greatly reduce the requirement of sample size, and it is not necessary to accurately label each sample in the image during the sample labeling process.

Urban individual tree crown detection research using multispectral image dimensionality reduction with deep learning

Urban individual tree crown detection research using multispectral image dimensionality reduction with deep learning

Estimating Primary Forest Attributes and Rare Community Characteristics Using Unmanned Aerial Systems (UAS): An Enrichment of Conventional Forest Inventories

The techniques for conducting forest inventories have been established over centuries of land management and conservation. In recent decades, however, compelling new tools and methodologies in remote sensing, computer vision, and data science have offered innovative pathways for enhancing the effectiveness and comprehension of these sampling designs. Now with the aid of Unmanned Aerial Systems (UAS) and advanced image processing techniques, we have never been closer to mapping forests at field-based inventory scales. Our research, conducted in New Hampshire on complex mixed-species forests, used natural color UAS imagery for estimating individual tree diameters (diameter at breast height (dbh)) as well as stand level estimates of Basal Area per Hectare (BA/ha), Quadratic Mean Diameter (QMD), Trees per Hectare (TPH), and a Stand Density Index (SDI) using digital photogrammetry. To strengthen our understanding of these forests, we also assessed the proficiency of the UAS to map the presence of large trees (i.e., >40 cm in diameter). We assessed the proficiency of UAS digital photogrammetry for identifying large trees in two ways: (1) using the UAS estimated dbh and the 40 cm size threshold and (2) using a random forest supervised classification and a combination of spectral, textural, and geometric features. Our UAS-based estimates of tree diameter reported an average error of 19.7% to 33.7%. At the stand level, BA/ha and QMD were overestimated by 42.18% and 62.09%, respectively, while TPH and SDI were underestimated by 45.58% and 3.34%. When considering only stands larger than 9 ha however, the overestimation of BA/ha at the stand level dropped to 14.629%. The overall classification of large trees, using the random forest supervised classification achieved an overall accuracy of 85%. The efficiency and effectiveness of these methods offer local land managers the opportunity to better understand their forested ecosystems. Future research into individual tree crown detection and delineation, especially for co-dominant or suppressed trees, will further support these efforts.

INDIVIDUAL BANANA TREE CROWN DELINEATION USING UNMANNED AERIAL VEHICLE (UAV) IMAGES

Abstract. Individual Tree Crown (ITC) delineation from aerial imageries plays an important role in forestry management and precision farming. Several conventional as well as machine learning and deep learning algorithms have been recently used in ITC detection purpose. In this paper, we present Convolutional Neural Network (CNN) and Support Vector Machine (SVM) as the deep learning and machine learning algorithms along with conventional methods of classification such as Object Based Image Analysis (OBIA) and Nearest Neighborhood (NN) classification for banana tree delineation. The comparison was done based by considering two cases; Firstly, every single classifier was compared by feeding the image with height information to see the effect of height in banana tree delineation. Secondly, individual classifiers were compared quantitatively and qualitatively based on five metrices i.e., Overall Accuracy, Recall, Precision, F-Score, and Intersection Over Union (IoU) and best classifier was determined. The result shows that there are no significant differences in the metrices when height information was fed as there were banana tree of almost similar height in the farm. The result as discussed in quantitative and qualitative analysis showed that the CNN algorithm out performed SVM, OBIA and NN techniques for crown delineation in term of performance measures.

Automated tree-crown and height detection in a young forest plantation using mask region-based convolutional neural network (Mask R-CNN)

Tree-crown and height are primary tree measurements in forest inventory. Convolutional neural networks (CNNs) are a class of neural networks, which can be used in forest inventory; however, no prior studies have developed a CNN model to detect tree crown and height simultaneously. This study is the first-of-its-kind that explored training a mask region-based convolutional neural network (Mask R-CNN) for automatically and concurrently detecting discontinuous tree crown and height of Chinese fir (Cunninghamia lanceolata (Lamb) Hook) in a plantation. A DJI Phantom4-Multispectral Unmanned Aerial Vehicle (UAV) was used to obtain high-resolution images of the study site, Shunchang County, China. Tree crown and height of Chinese fir was manually delineated and derived from this UAV imagery. A portion of the ground-truthed tree height values were used as a test set, and the remaining measurements were used as the model training data. Six different band combinations and derivations of the UAV imagery were used to detect tree crown and height, respectively (Multi band-DSM, RGB-DSM, NDVI-DSM, Multi band-CHM, RGB-CHM, and NDVI-CHM combination). The Mask R-CNN model with the NDVI-CHM combination achieved superior performance. The accuracy of Chinese fir’s individual tree-crown detection was considerable (F1 score = 84.68%), the Intersection over Union (IoU) of tree crown delineation was 91.27%, and tree height estimates were highly correlated with the height from UAV imagery (R2 = 0.97, RMSE = 0.11 m, rRMSE = 4.35%) and field measurement (R2 = 0.87, RMSE = 0.24 m, rRMSE = 9.67%). Results demonstrate that the input image with an CHM achieves higher accuracy of tree crown delineation and tree height assessment compared to an image with a DSM. The accuracy and efficiency of Mask R-CNN has a great potential to assist the application of remote sensing in forests.

Individual Tree Crown Detection Using UAV Orthomosaic

Unmanned Aerial Vehicles (UAVs) are increasingly used in forestry as they are economical and flexible. This study aims to present the advantages of the drone photogrammetry method in collecting individual tree crowns, as individual tree crown detection could deliver essential ecological and economic information. The referred accuracy for individual tree crown extraction is 79.2%. Only crowns that were clearly visible were selected and manually delineated on the image because the distribution of the true crown size is significantly different from the segmented crowns. The aim of this study is to investigate UAVs orthomosaics in individual tree crown detection. The objectives of this study are to produce the orthomosaic of tree crown extraction mapping using the Pix4D software and analyze the tree crowns using tree crown delineation and the OBIA algorithm. Data processing involves the processing of aerial images using Pix4Dmapper. Automatic tree crown detection involves a tree crown delineation algorithm and OBIA operations to process the tree crown extraction. The crown delineation algorithm and OBIA algorithm operation will be compared to the actual tree crown measurement in terms of diameter and area. The tree crown delineation method obtained a 0.347m mean diameter difference from the actual tree crown diameter, while the OBIA approach obtained 4.98m. The tree crown delineation method obtained 97.26% of the actual tree crown area, while OBIA obtained 91.74%.

Individual tree crown detection from high spatial resolution imagery using a revised local maximum filtering

Accurate tree density and location are important information for optimizing the management and production of forest. Combination of remote sensing techniques and local maximum (LM) filtering algorithm provides a feasible approach to individual tree crown detection, but still faces high error under complicate canopy structure. In this study, a revised LM (RLM) algorithm is presented and evaluated for identifying individual trees from four high spatial-resolution images. Instead of a moving window technique, the RLM algorithm finds crown center seeds by searching local maximal in the transects along row and column directions of the image. Each of final crown centers is then searched using a variable window centered at the crown center seed. Strategies for splitting and merging crowns are implemented in the RLM algorithm to reduce false detection. Result showed that accuracy of the RLM algorithm was more sensitive to its minimum crown length parameter (CLmin). The RLM algorithm driven by the CLmin estimates achieved high overall accuracies between 85% and 91% and low commission (9–14%) and omission errors (8–15%) for the four images. Splitting and merging strategies implemented in the RLM algorithm effectively reduced commission and omission errors. These results indicate that the RLM algorithm is a feasible method with well-defined parameters for automatically detecting individual trees with satisfactory detection accuracy.

Automatic Detection and Parameter Estimation of Ginkgo biloba in Urban Environment Based on RGB Images

Individual tree crown detection and morphological parameter estimation can be used to quantify the social, ecological, and landscape value of urban trees, which play increasingly important roles in densely built cities. In this study, a novel architecture based on deep learning was developed to automatically detect tree crowns and estimate crown sizes and tree heights from a set of red‐green‐blue (RGB) images. The feasibility of the architecture was verified based on high‐resolution unmanned aerial vehicle (UAV) images using a neural network called FPN‐Faster R‐CNN, which is a unified network combining a feature pyramid network (FPN) and a faster region‐based convolutional neural network (Faster R‐CNN). Among more than 400 tree crowns, including 213 crowns of Ginkgo biloba, in 7 complex test scenes, 174 ginkgo tree crowns were correctly identified, yielding a recall level of 0.82. The precision and F‐score were 0.96 and 0.88, respectively. The mean absolute error (MAE) and mean absolute percentage error (MAPE) of crown width estimation were 0.37 m and 8.71%, respectively. The MAE and MAPE of tree height estimation were 0.68 m and 7.33%, respectively. The results showed that the architecture is practical and can be applied to many complex urban scenes to meet the needs of urban green space inventory management.

Individual Tree-Crown Detection and Species Classification in Very High-Resolution Remote Sensing Imagery Using a Deep Learning Ensemble Model

Traditional methods for individual tree-crown (ITC) detection (image classification, segmentation, template matching, etc.) applied to very high-resolution remote sensing imagery have been shown to struggle in disparate landscape types or image resolutions due to scale problems and information complexity. Deep learning promised to overcome these shortcomings due to its superior performance and versatility, proven with reported detection rates of ~90%. However, such models still find their limits in transferability across study areas, because of different tree conditions (e.g., isolated trees vs. compact forests) and/or resolutions of the input data. This study introduces a highly replicable deep learning ensemble design for ITC detection and species classification based on the established single shot detector (SSD) model. The ensemble model design is based on varying the input data for the SSD models, coupled with a voting strategy for the output predictions. Very high-resolution unmanned aerial vehicles (UAV), aerial remote sensing imagery and elevation data are used in different combinations to test the performance of the ensemble models in three study sites with highly contrasting spatial patterns. The results show that ensemble models perform better than any single SSD model, regardless of the local tree conditions or image resolution. The detection performance and the accuracy rates improved by 3–18% with only as few as two participant single models, regardless of the study site. However, when more than two models were included, the performance of the ensemble models only improved slightly and even dropped.

Individual Tree Detection from UAV Imagery Using Hölder Exponent

This article explores the application of Hölder exponent analysis for the identification and delineation of single tree crowns from very high-resolution (VHR) imagery captured by unmanned aerial vehicles (UAV). Most of the present individual tree crown detection (ITD) methods are based on canopy height models (CHM) and are very effective as far as an accurate digital terrain model (DTM) is available. This prerequisite is hard to accomplish in some environments, such as alpine forests, because of the high tree density and the irregular topography. Indeed, in such conditions, the photogrammetrically derived DTM can be inaccurate. A novel image processing method supports the segmentation of crowns based only on the parameter related to the multifractality description of the image. In particular, the multifractality is related to the deviation from a strict self-similarity and can be treated as the information about the level of inhomogeneity of considered data. The multifractals, even if well established in image processing and recognized by the scientific community, represent a relatively new application in VHR aerial imagery. In this work, the Hölder exponent (one of the parameters related to multifractal description) is applied to the study of a coniferous forest in the Western Alps. The infrared dataset with 10 cm pixels is captured by a UAV-mounted optical sensor. Then, the tree crowns are detected by a basic workflow. This consists of the thresholding of the image on the basis of the Hölder exponent. Then, the single crowns are segmented through a multiresolution segmentation approach. The ITD segmentation was validated through a two-level validation analysis that included a visual evaluation and the computing of quantitative measures based on 200 reference crowns. The results were checked against the ITD performed in the same area but using only spectral, textural, and elevation information. Specifically, the visual assessment included the estimation of the producer’s and user’s accuracies and the F1 score. The quantitative measures considered are the root mean square error (RMSE) (for the area, the perimeter, and the distance between centroids) and the over-segmentation and under-segmentation indices, the Jaccard index, and the completeness index. The F1 score indicates positive results (over 73%) as well as the completeness index that does not exceed 0.23 on a scale of 0 to 1, taking 0 as the best result possible. The RMSE of the extension of crowns is 3 m2, which represents only 14% of the average extension of reference crowns. The performance of the segmentation based on the Hölder exponent outclasses those based on spectral, textural, and elevation information. Despite the good results of the segmentation, the method tends to under-segment rather than over-segment, especially in areas with sloping. This study lays the groundwork for future research into ITD from VHR optical imagery using multifractals.

Individual tree crown detection and delineation across a woodland using leaf-on and leaf-off imagery from a UAV consumer-grade camera

Extraction of information about individual trees using remotely sensed data is essential to supporting ecological and commercial applications in forest environments. Data acquired by consumer-grade cameras onboard unmanned aerial vehicles (UAV) offer an affordable option of high-spatial resolution imagery that can be used to extract forest structural information at a tree level. The aim of this work is to investigate the potential and accuracy of UAV time-series data to automatically detect and delineate tree crowns across an entire woodland. The workflow (presented in a step-by-step manner) involves the construction of a canopy height model (CHM) based on digital elevation models derived from the UAV photogrammetric point clouds. A watershed-based approach is modified to automatically detect and delineate the tree crowns, based on the CHM and the brightness information from the UAV orthomosaics. The accuracy of the proposed method was evaluated by comparing its results against manually delineated tree crowns. The results show an overall accuracy of 63%, where conifer species were more accurately delineated (up to 80%), while broadleaf species returned lower accuracies (<50 % ). Continued research is necessary to improve the confidence of automated individual tree crown detection and delineation, especially over complex forest structures.

Tree species classification using UAS-based digital aerial photogrammetry point clouds and multispectral imageries in subtropical natural forests

Tree species composition of forest stand is an important indicator of forest inventory attributes for assessing ecosystem health, understanding successional processes, and digitally displaying forest biodiversity. In this study, we acquired high spatial resolution multispectral and RGB imagery over a subtropical natural forest in southwest China using a fixed-wing UAV system. Digital aerial photogrammetric (DAP) technique was used to generate multi-spectral and RGB derived point clouds, upon which individual tree crown (ITC) delineation algorithms and a machine learning classifier were used to identify dominant tree species. To do so, the structure-from-motion method was used to generate RGB imagery-based DAP point clouds. Then, three ITC delineation algorithms (i.e., point cloud segmentation (PCS), image-based multiresolution segmentation (IMRS), and advanced multiresolution segmentation (AMRS)) were used and assessed for ITC detection. Finally, tree-level metrics (i.e., multispectral, texture and point cloud metrics) were used as metrics in the random forest classifier used to classify eight dominant tree species. Results indicated that the accuracy of the AMRS ITC segmentation was highest (F1-score = 82.5 %), followed by the segmentation using PCS (F1-score = 79.6 %), the IMRS exhibited the lowest accuracy (F1-score = 78.6 %); forest types classification (coniferous and deciduous) had a higher accuracy than the classification of all eight tree species, and the combination of spectral, texture and structural metrics had the highest classification accuracy (overall accuracy = 80.20 %). In the classification of both eight tree species and two forest types, the classification accuracies were lowest when only using spectral metrics, indicated that the texture metrics and point cloud structural metrics had a positive impact on the classification (the overall accuracy and kappa accuracy increased by 1.49–4.46 % and 2.86–6.84 %, respectively).

3D Segmentation of Trees Through a Flexible Multiclass Graph Cut Algorithm

Developing a robust algorithm for automatic individual tree crown (ITC) detection from laser scanning datasets is important for tracking the responses of trees to anthropogenic change. Such approaches allow the size, growth and mortality of individual trees to be measured, enabling forest carbon stocks and dynamics to be tracked and understood. Many algorithms exist for structurally simple forests including coniferous forests and plantations. Finding a robust solution for structurally complex, species-rich tropical forests remains a challenge; existing segmentation algorithms often perform less well than simple area-based approaches when estimating plot-level biomass. Here we describe a Multi-Class Graph Cut (MCGC) approach to tree crown delineation. This uses local three-dimensional geometry and density information, alongside knowledge of crown allometries, to segment individual tree crowns from LiDAR point clouds. Our approach robustly identifies trees in the top and intermediate layers of the canopy, but cannot recognise small trees. From these three-dimensional crowns, we are able to measure individual tree biomass. Comparing these estimates to those from permanent inventory plots, our algorithm is able to produce robust estimates of hectare-scale carbon density, demonstrating the power of ITC approaches in monitoring forests. The flexibility of our method to add additional dimensions of information, such as spectral reflectance, make this approach an obvious avenue for future development and extension to other sources of three-dimensional data, such as structure from motion datasets.

Fine-Scale Spatial and Spectral Clustering of UAV-Acquired Digital Aerial Photogrammetric (DAP) Point Clouds for Individual Tree Crown Detection and Segmentation

The field of remote sensing is undergoing rapid changes through the utilization of unmanned aerial vehicle (UAV) technology. The rise of this new technology and the corresponding growth in the application of digital aerial photogrammetric point clouds (DAP) require renewed investigation into individual tree detection (ITD) routines; most of which have been developed for airborne laser scanning (ALS) and traditional aerial imagery. This article analyzes the application of a well-known ALS-ITD routine to UAV-acquired DAP. In particular, specific modifications are proposed and evaluated aimed at improving its applicability to DAP, with particular emphasis on the incorporation of spectral information through subcrown scale k-means clustering. The new routine, which utilizes point-level spectral information in the clustering process, improved overall true positive detection by ∼6.3%, with the most significant improvements in true positive detection found in lower canopy class stems. The new routine was also tested without the inclusion of spectral information and was shown to produce poorer results by ∼4.1%, indicating that the inclusion of these data is beneficial for ITD approaches. This new routine represents an advancement of processing approaches incorporating both structural and spectral components for ITD in the era of UAV remote sensing in forested environments.