Inadvertent Contamination Research Articles

A robust set of qPCR methods to evaluate adulteration in major spices and herbs

Consumers and companies associated with food or pharmaceuticals rely on spices and herbs in various forms. Their intricate supply chains, elevated prices, and low-volume production render them vulnerable to fraudulent practices. However, comprehensive methodologies to detect adulterants remain scarce, impeding national control laboratories from enforcing European and national legislation. In this study, we present quantitative real-time PCR (qPCR) methods designed to identify the top five adulterants of each of six commonly consumed spices and herbs: paprika/chili, turmeric, saffron, cumin, oregano and black pepper. The specificity of each method was confirmed by qPCR analysis of a large collection of relevant plant species. Each authentic sample was combined with its respective top five adulterants as identified in the European Union-wide coordinated control plan on herbs and spices in 2021 or in the existing literature. These binary mixtures were used to evaluate the method's performance with respect to sensitivity, linearity and trueness at four levels of adulterants concentration. Detection was also investigated in multi-adulterated samples. These SYBR™ Green-based qPCR methods enable the specific detection of adulterants, and their sensitivity allows for the distinction between inadvertent contamination and deliberate adulteration. Altogether, these methods contribute to safeguard the authenticity of these high-value commodities.

The equations of state of statically compressed palladium and rhodium

The pressure–volume equations of state of palladium and rhodium statically compressed in neon are presented. Vinet fits give parameters for palladium: V0=58.678(73) Å3, B0=189.3(30) GPa, B0′=5.473(63), and rhodium: V0=55.062(63) Å3, B0=241.3(65) GPa, B0′=5.34(24). Both metals are observed to react with hydrocarbons under pressure to form hydrides. Existing equations of state are discussed with regard to potential inadvertent hydrogen contamination as a source for discrepancies and anomalous fitted parameters.

P-251 Differences in fertilization, blastocyst, and ploidy rates in intracytoplasmic sperm injection (ICSI) versus conventional insemination for patients undergoing in vitro fertilization (IVF)

Abstract Study question Are there differences in fertilization, blastocyst development, or euploidy rates when comparing ICSI versus conventional insemination among patients with male and non-male factor infertility? Summary answer Fertilization rate was lower for male factor ICSI. There were no differences in blastocyst development. Euploidy rate was lower for non-male factor ICSI. What is known already ICSI was developed for male factor infertility due to its requirement for a very small number of viable sperm. Its use has expanded beyond male factor due to some studies suggesting enhanced fertilization, and lower risks of failed fertilization or inadvertent contamination of embryo biopsy specimens. There are potential risks associated with ICSI, including imprinting disorders, birth defects, and significantly increased cost. It is also unclear whether ICSI contributes to genetic abnormalities by bypassing the egg’s natural sperm selection and potentially disrupting the meiosis apparatus. Study design, size, duration This retrospective cohort study of 576 patients was conducted at a single clinic from January 2021 to December 2021. Patients were grouped into (1) ICSI with male factor (n = 201), (2) ICSI with non-male factor (n = 160), and (3) conventional insemination with non-male factor (n = 215). Primary outcome was ploidy status, determined by calculating the percentage of euploid, aneuploid, and mosaic (both low and high mosaic) among the three groups. Secondary outcomes included fertilization and blastocyst development rates. Participants/materials, setting, methods Patients undergoing autologous IVF at a single clinic, with PGT-A performed at a single lab were included. Fertilization rate was defined as the percentage of 2PNs per number of mature eggs injected/inseminated. Blastocyst rate was defined as the percentage of blastocysts per 2PNs. Ploidy rate was defined as the percentage of euploid/aneuploid/mosaic blastocysts per total biopsied blastocysts for which a result was obtained. Percentage data was compared using N-1 Chi-squared test. Main results and the role of chance There were no significant differences in patient age, number of oocytes retrieved, or number of mature oocytes among the three groups. Fertilization rate for male factor ICSI was significantly lower compared to both non-male factor ICSI (74.2% vs 77.8%, p = 0.005) and conventional insemination (74.2% vs 76.8%, p = 0.018). There was no significant difference in fertilization rate between non-male factor ICSI and conventional insemination. There were no significant differences between blastocyst rates on Day 5, 6, or 7, or total blastocyst rate among the three groups. The euploidy rate for conventional insemination was significantly higher than that for non-male factor ICSI (53.4% vs 46.8%; p = 0.008). Non-male factor ICSI yielded lower euploidy rate than male factor ICSI (46.8% vs 52.4%, p = 0.034). Aneuploidy rate for non-male factor ICSI was significantly higher than both male factor ICSI (36.1% vs 31.0%, p = 0.041) and conventional insemination (36.1% vs 31.0%, p = 0.030). Mosaicism levels were similar between the three groups. There were no significant differences in number of biopsied embryos with no results: 5 for ICSI male factor group (0.59%), 6 for ICSI non-male factor (0.96%), and 10 for conventional insemination (0.89%). Limitations, reasons for caution This was a retrospective analysis of patients from a single clinic, with a relatively small sample size so results may not be generalizable to all populations. Extensive demographic information and baseline characteristics (including reason for ICSI performed among non-male factor patients) were not analyzed so there may be confounding factors. Wider implications of the findings This is the first study that we are aware of to investigate the ploidy status of embryos created among non-male factor patients undergoing ICSI. Conservative use of ICSI can significantly decrease the cost of IVF. Larger studies are needed to further elucidate the role for ICSI among these patients. Trial registration number not applicable

Occurrence and antimicrobial resistance of Salmonella species and potentially pathogenic Escherichia coli in free-living seals of Canadian Atlantic and eastern Arctic waters.

Seal populations in Canadian waters provide sustenance to coastal communities. There is potential for pathogenic and/or antimicrobial-resistant bacteria to transfer to humans through inadvertent faecal contamination of seal products. The objective of this study was to investigate the occurrence and potential antimicrobial resistance of Salmonella spp., Escherichia coli and Listeria monocytogenes in faecal samples collected from grey seals (Halichoerus grypus) in the Gulf of St. Lawrence and from ringed seals (Pusa hispida) in Frobisher Bay and Eclipse Sound, Nunavut, Canada. Grey seals were harvested during commercial hunts or during scientific sampling; ringed seals were collected by Inuit hunters during subsistence harvests. Virulence genes defining pathogenic E. coli were identified by PCR, and antimicrobial susceptibility testing was performed on recovered isolates. In grey seals, E. coli was detected in 34/44 (77%) samples, and pathogenic E. coli (extraintestinal E. coli [ExPEC], enteropathogenic E. coli [EPEC] or ExPEC/EPEC) was detected in 13/44 (29%) samples. Non-susceptibility to beta-lactams and quinolones was observed in isolates from 18 grey seals. In ringed seals from Frobisher Bay, E. coli was detected in 4/45 (9%) samples; neither virulence genes nor antimicrobial resistance was detected in these isolates. In ringed seals from Eclipse Sound, E. coli was detected in 8/50 (16%) samples and pathogenic E. coli (ExPEC and ExPEC/EPEC) in 5/50 (10%) samples. One seal from Eclipse Sound had an E. coli isolate resistant to beta-lactams. A monophasic Salmonella Typhimurium was recovered from 8/50 (16%) seals from Eclipse Sound. All Salmonella isolates were resistant to ampicillin, streptomycin, sulfisoxazole and tetracycline. L. monocytogenes was not detected in any sample. These findings suggest that seals may act as important sentinel species and as reservoirs or vectors for antimicrobial-resistant and virulent E. coli and Salmonella species. Further characterization of these isolates would provide additional insights into the source and spread of antimicrobial resistance and virulence genes in these populations of free-living seals.

No Link Between Inadvertent Surgical Glove Contamination and Surgical Site Infection in Patients Undergoing Elective Neurosurgical Operations

Controllable factors associated with surgical site infections (SSIs) have focused on reducing contamination of the surgical field with potential pathogens. The aim of this prospective study is to determine the incidence of glove contamination in a series of elective neurosurgical operations and determine the relationship of such glove contamination to subsequent SSI. We hypothesize that contamination of surgical gloves is associated with subsequent SSI. In this prospective quality improvement study, gloves of the surgical team were swabbed for standard culture just prior to wound closure of elective neurosurgical operations. Patient characteristics, surgical details, and occurrence of subsequent SSIs were collected retrospectively from the electronic medical records. Data were analyzed with χ2 with Fisher's exact test and Student's t test. Surgical glove contamination occurred in 10 of 96 elective neurosurgical cases (10.4%). SSIs occurred in 6 cases (6.2%), but no SSI occurred in a case in which surgical glove contamination occurred (P=1). SSI was associated with younger patient age (P=0.0448), and surgical glove contamination was associated with less resident experience (P=0.0354). Surgical glove contamination identified at the time of wound closure does not correlate with the development of subsequent SSI in elective neurosurgical operations.

Deep-Dive Directions for Dietitians (DDDDs): a roadmap for the nutritional management of poorly responsive coeliac disease patients.

A substantial number of coeliac disease patients fail to respond to treatment with a gluten-free diet. Non-responsiveness might be multifactorial and the spectrum ranges from intentional or inadvertent gluten contamination as the main aetiology, to sensitivity to other nutrients (in addition to additives and preservatives). If the diagnosis of coeliac disease is correctly made and cross contamination and other factors have been excluded, then the aetiology behind the symptoms of a small group of coeliac patients might be refractory coeliac disease. The journey to ensure gluten contamination is not behind the persistent symptoms, is very challenging and requires in-depth training and skills. We therefore present potential guidance for the healthcare professional, in particular dietitians, on how to navigate these challenges on this journey.

Rapid Ultrasensitive and High-Throughput Bioburden Detection: Microfluidics and Instrumentation.

Contamination detection often requires lengthy culturing steps to detect low-level bioburden. To increase the rate of detection and decrease the limit of detection (LOD), a system featuring microfluidics and a multichannel fluorometer has been developed. The eight-channel fluorometer enables parallel testing of multiple samples with the LOD as low as <1 cfu/mL. This low-cost system utilizes the slope of fluorescence intensity that serves as the criterion for bioburden detection. The redox indicator dye resazurin is used to monitor the presence of viable cells in this study and is reduced to resorufin with a high quantum yield at 585 nm. The sample under investigation is spiked with resazurin and loaded in a special-design microfluidic cassette, and the rate of change is observed via the fluorometer. The method was validated using primary Escherichia coli culture in comparison with a spectrophotometer which served as the gold standard. An optimized assay based on Luria-Bertani medium was developed. The impact on the assay sensitivity based on incubation and filtration steps was also explored. The assay is shown to pick up inadvertent contamination from test tubes and pipette tips showing its applicability in real-world settings. The data analysis demonstrated a comparable performance of the multichannel fluorometer vis-a-vis the conventional plate reader. The multichannel system is shown to detect bioburden presence in as low as 20 s for bacterial concentrations ≥5 cfu/mL after 6 h of incubation. Considering its portability, low cost, simplicity of operation, and relevant assay sensitivity, the system is well positioned to detect low-level bioburden in the laboratory, pharmaceutical, and field settings.

Application of a novel osteotomy instrumentation as a substitute tool in total hip arthroplasty

BackgroundMechanical failure, power shortage, and inadvertent contamination of the oscillating saw occasionally occurs in actualizing femoral neck osteotomy during total hip arthroplasty (THA); however, no appropriate alternative solution is currently available. This study aimed to introduce a novel osteotomy instrumentation (fretsaw, jig, cable passer hook) as a substitute tool while the oscillating saw was unavailable during THA.MethodsThis study included 40 patients (40 hips) who underwent femoral neck osteotomy during primary THA using the new osteotomy instrumentation (n = 20) and the oscillating saw (n = 20). Clinical data and intraoperative findings of all patients were evaluated.ResultsThe mean osteotomy time was 22.3 ± 3.1 s (range, 17–30 s) and 29.4 ± 3.7 s (range, 25–39 s) in the oscillating saw group and in the new osteotomy instrumentation group, respectively (P < 0.001). The Harris Hip Score (HHS) improved in both groups; the mean HSS was 82.3 ± 2.5 and 83.3 ± 3.5 in the oscillating saw group and new osteotomy instrumentation group at 6 months after surgery, respectively (P = 0.297).ConclusionsThe original osteotomy instrumentation can be an ideal substitute tool for femoral neck osteotomy in THA, especially when the oscillating saw is unavailable or malfunctioning.

Preoperative Management of Perihilar Cholangiocarcinoma.

Simple SummaryIn patients diagnosed with potentially resectable perihilar cholangiocarcinoma, deliberate and coordinated preoperative workup and optimization of the patient and future liver remnant are crucial. Strategic optimization and multidisciplinary evaluation may reduce the rate of unnecessary procedures, perioperative complications, and non-therapeutic laparotomy for unresectable disease. In this review, we describe preoperative assessment and optimization of patients with perihilar cholangiocarcinoma, including imaging workup, evaluation of resectability, preoperative drainage and hypertrophy-inducing procedures, and the role of diagnostic laparoscopy.Perihilar cholangiocarcinoma is a rare hepatobiliary malignancy that requires thoughtful, multidisciplinary evaluation in the preoperative setting to ensure optimal patient outcomes. Comprehensive preoperative imaging, including multiphase CT angiography and some form of cholangiographic assessment, is key to assessing resectability. While many staging systems exist, the Blumgart staging system provides the most useful combination of resectability assessment and prognostic information for use in the preoperative setting. Once resectability is confirmed, volumetric analysis should be performed. Upfront resection without biliary drainage or portal venous embolization may be considered in patients without cholangitis and an estimated functional liver remnant (FLR) > 40%. In patients with FLR < 40%, judicious use of biliary drainage is advised, with the goal of selective biliary drainage of the functional liver remnant. Percutaneous biliary drainage may avoid inadvertent contamination of the contralateral biliary tree and associated infectious complications, though the relative effectiveness of percutaneous and endoscopic techniques is an ongoing area of study and debate. Patients with low FLR also require intervention to induce hypertrophy, most commonly portal venous embolization, in an effort to reduce the rate of postoperative liver failure. Even with extensive preoperative workup, many patients will be found to have metastatic disease at exploration and diagnostic laparoscopy may reduce the rate of non-therapeutic laparotomy. Management of perihilar cholangiocarcinoma continues to evolve, with ongoing efforts to improve preoperative liver hypertrophy and to further define the role of transplantation in disease management.

The use of cell salvage during second-stage reimplantation for the treatment of chronic hip periprosthetic joint infection: a retrospective cohort study

IntroductionGiven the possibility of inadvertent bacterial contamination of salvaged blood, the use of cell salvage is relatively contraindicated in cases of reimplantation for chronic hip periprosthetic joint infection (PJI). However, there are no published data supporting this assertion. The purpose of the current study was to compare the reinfection rate and rate of postoperative allogeneic blood transfusion (ABT) in second-stage reimplantation for PJI with or without intraoperative cell salvage reinfusion.Materials and methodsWe identified 125 patients who underwent two-stage exchange for chronic hip PJI between November 2012 and April 2019. The groups of patients who had (n = 61) and had not (n = 64) received intraoperative cell salvage reinfusion were compared with respect to the curative infection-free rate. Moreover, we compared the need for postoperative ABT and identified independent factors associated with ABT using multiple regression analysis.ResultsThe log-rank survival curve with an endpoint of infection eradication failure was not significantly different between the cell salvage group (98.4%, 95% CI 95.3–99.9%) and the control group (95.3%, 95% CI 90.2–99.9%) at one year (log rank, P = .330). The rates of postoperative ABT in the cell salvage group were significantly lower than those in the control group (11.5% vs 26.6%, P = .041). In multivariable models, patient age, body mass index, preoperative hemoglobin level, and intraoperative cell salvage were independent predictors of ABT exposure (P < .05).ConclusionsThe use of cell salvage during reimplantation in two-stage exchange for chronic hip PJI did not appear to increase the reinfection rate, while it significantly reduced the rate of postoperative allogeneic red blood transfusion. Greater age, lower BMI, lower preoperative hemoglobin, and non-intraoperative cell salvage reinfusion were associated with higher rate of allogeneic red blood transfusion.

Collection and Identification of Biological Samples Based on Military On-Site Detection Devices

Due to still current biological threats related to the activities of terrorist groups, crisis situations in many regions of the world, as well as cyclical epidemics, fast and reliable detection of biological contamina-tion is an essential element of ensuring broadly understood safety of the population. The work deals with the sampling and verification procedures. This paper focuses on sample preparation techniques for analysis and details analytical methods for identifying biological agents. Additionally, on-site technologies implemented in military devices for the detection of biological contamination were discussed. The work enables the reader to get acquainted with modern techniques of detection of factors of biological origin and their identification, which is the knowledge necessary when choosing the appropriate equipment depending on the purpose of the contamination recognition sub-unit and the task at hand. Knowledge of sam-pling and preparation of samples for analysis will help to increase the skills of the sampling teams to do so and to achieve reliable results by using appropriate procedures and eliminating the possibility of loss of the analyte or inadvertent contamination of the sample. It will also increase safety at every stage of working with biological samples. All these activities can contribute to the global increase in security of the population around the world. Keywords: chemical sciences, biological weapon, bioterrorism, CBRN, PCR, UV-LIF

The Effectiveness of Hot Bead Sterilization in Maintaining Sterile Surgical Instrument Tips across Sequential Mouse Surgeries.

One strategy commonly employed for rodent surgeries is a "tips-only" surgical technique, which restricts the surgeon to using only the sterile working ends of the surgical instruments to manipulate the surgical field and sterilizes instrument tips with a hot bead sterilizer between consecutive rodents. Despite the common use of the "tips-only" technique, research is lacking on the number of sequential surgeries for which the same set of hot bead-sterilized instruments can be used before introducing bacterial contamination. We performed serial mouse surgeries using the "tips-only" technique under 3 different conditions (aseptic, fur contamination, or cecal contamination) and assessed aerobic bacterial growth before and after each round of hot bead sterilization. Instrument tips showed an increasing probability of contamination of at least one instrument in a series of consecutive surgeries. The probability that all surgical instrument tips in the series were sterile after hot bead sterilization fell by 4% for each surgery involving inadvertent or fur contamination and by 11.5% for each surgery with contamination for all surgical types combined (including entering the gastrointestinal tract). Based on our results, hot bead sterilization is not adequate for surgeries associated with gross contamination. Under our experimental conditions and assuming independence of outcomes between consecutive surgeries, up to 5 surgeries associated with minor or inadvertent contamination could be performed in series with a probability higher than 80% that all instrument tips were sterile for all surgeries. A case-by-case risk assessment should be conducted to derive institutional guidelines for the maximal number of surgeries that can be performed in sequence using the "tips-only" technique with hot bead sterilization of the same set of surgical instruments between surgeries. Full sterilization of instruments after every surgery provides the greatest confidence in maintaining sterility.

CORR Insights®: Do Adhesive Drapes Have an Effect on Infection Rates in Orthopaedic Surgery? A Systematic Review and Meta-analysis.

Where Are We Now? For ideal surgical skin preparation and draping, plastic adhesive incisional drapes are placed on the skin directly over the incision site, and surgeons then make their incisions through the adhesive drape [7]. In orthopaedic surgery, these drapes are widely used in total joint arthroplasty because of their potential to reduce the risk of surgical site infections [4]. But despite improved infection prevention protocols, little progress has been made in decreasing the incidence of periprosthetic joint infection (PJI). In one population-based study, no improvement in infection rates was observed over a 15-year period [5]. The fact that the incidence of PJI remains unchanged over time means we have more work to do. Things seem no more promising on the treatment side; the survivorship of arthroplasties after irrigation and debridement, and after two-stage revisions, has not improved over the last two decades or so [8]. In the current study, Mundi et al. [6] performed a meta-analysis of MEDLINE and Embase databases and gathered evidence from randomized controlled trials that compared drapes with controls from 2000 to 2021. They had relatively little to work with; appropriately, they restricted the study to randomized trials, but only four were available in this massive database review that employed a 20-year data pull. Based on data from pooled wound swab cultures, Mundi et al. [6] found that four studies showed a reduction in wound contamination with the use of adhesive drapes. The findings of this meta-analysis suggest that adhesive drapes, including those with antimicrobial properties, decrease the risk of wound contamination during orthopaedic procedures. In circumstances where drape adhesion is compromised and peel back occurs at the wound edge, there is an increased risk of wound contamination with the use of adhesive drapes. In light of these findings, it’s fair to conclude that the best-available evidence is indeterminate as to the effect of adhesive drapes on the risk of surgical site infections; however, if used, care should be taken to avoid or minimize drape peel back. Where Do We Need To Go? Meta-analyses are most helpful when the source studies disagree. In my large, busy group practice, we generally use adhesive drapes in trauma, total joint arthroplasty, and sports medicine procedures. Do we have the data to justify this practice in these areas? The current study [6] found that two of the studies supported routine use of adherent drapes, while two randomized clinical trials showed no difference. The authors could not definitively prove that peeling back the drapes for closure or inadvertent peel back during the procedure was adverse. How might postoperative dressings protect against inadvertent skin contamination that occurs during surgery or dressing peel back? We don’t have a lot of experience to go on, despite this extensive meta-analysis. Personally, I have concerns that we are missing something, because in my practice, I am seeing an increase in unusual skin flora infections. Future studies need to further examine these gaps in our knowledge. Surgeons should look at all the ways to reduce infection. We need to be vigilant about antibiotic stewardship and draping. How Do We Get There? Randomized draping studies are realistically difficult to do because it would take a second study of more than 4000 patients to demonstrate a reduction from 2% PJI to 1% PJI by changing drapes. In our practice, we utilize barrier draping for trauma, adult reconstruction, and sports medicine procedures to try and isolate the skin flora from the deep wound. However, there is a paucity of data to support this practice. Other studies should focus on antibiotic stewardship, other barrier drapes, wound vacs, or antibiotic impregnated barriers to reduce contamination at the time of surgery [3]. There are few surgical draping studies available, but future studies should focus on decreasing the skin contamination, reducing risk of peel back, and combating the higher more insidious skin flora infections that seem to be on the rise.

Assessment of Diamond™ Nucleic Acid Dye for the identification and targeted sampling of latent DNA in operational casework

Recovery and DNA profiling of latent touch DNA deposits is a ubiquitous practice by operational forensic laboratories that provides critical evidence in many criminal investigations. Despite recent improvements in the sensitivity of contemporary DNA profiling kits, the inability to localise and visually quantify touch DNA deposits on an exhibit means that ineffective or unwarranted sampling is often performed leading to poor success. Diamond™ Nucleic Acid Dye (DD) is a fluorescent DNA binding dye which has recently been shown to bind to corneocytes enabling visualisation and targeted sampling of touch DNA deposits under controlled conditions. The ability to translate these findings to operational casework, where a diverse range of substrates is encountered and the amount and distribution of touch DNA is uncontrolled, is currently unknown. Here, we provide the first report on the use of DD in an operational context. Spraying items with DD was shown to have no impact on downstream immunological testing, DNA extraction, or DNA profiling with the GlobalFiler™ PCR amplification kit. DD was shown to effectively locate areas of touch DNA on select exhibits using the Polilight. Issues with background fluorescence, non-specific staining, interference from fingerprint enhancement reagents, or absorbance of the excitation light by black surfaces demonstrated that DD is not compatible with all exhibits. Background fluorescence also prevented the use of DD to screen for the presence of cellular material on IsoHelix swabs post-sampling but it was suitable for screening Lovell DNA tapelifts. A casework trial of 49 plastic bag and tape exhibits showed limited application of DD to triage out negative items as DNA was recovered from items where DD fluorescence was not detected. Where DD fluorescence was detected, its broad distribution prevented targeted sampling and any correlation to be made between the amount observed and DNA yield or profiling outcome. The DD procedure also increased the time taken to search exhibits and risk of inadvertent contamination. Our study suggests that DD is not suited as a generalised screening technique across all touch casework exhibits but further investigation is warranted to determine its applicability to specific exhibit types.

Multi-elemental determination of metals, metalloids and rare earth element concentrations in whole blood from the Canadian Health Measures Survey, 2009-2011

BackgroundAs part of Government of Canada’s Chemical Management Plan, substances containing aluminum (Al), bismuth (Bi), cerium (Ce), chromium (Cr), germanium (Ge), lanthanum (La), lithium (Li), neodymium (Nd), praseodymium (Pr), tellurium (Te), titanium (Ti) and yttrium (Y) were identified as priorities for risk assessment. Generating exposure estimates from all routes of exposure from multiple sources using a traditional approach for these elements can be challenging. The use of human biomonitoring (HBM) data would allow for direct and more precise assessment of the internal concentrations from all routes and all sources of exposure. There are no Canadian or North American population-level whole blood HBM data for the elements listed above. Therefore, this is the first biomonitoring project carried out to determine the concentrations of these elements from a nationally representative sample of Canadians. ObjectivesThe objective of this study was to generate whole blood concentrations for Al, Bi, Ce, Cr, Ge, La, Li. Nd, Pr, Te, Ti and Y in the Canadian population using biobank samples from the Canadian Health Measures Survey (CHMS) cycle 2 (2009–2011) for use in characterizing exposure in screening assessments and for establishing baseline concentrations to determine how exposures are changing over time. MethodsThe sample analysis was conducted by ICP-MS. A rigorous quality control and quality assurance process was implemented in order to generate data with high accuracy and precision while measuring low concentrations and minimizing possible inadvertent contamination. ResultsOf the elements analysed, the whole blood concentrations (μg/L) of Al, Ce, Cr, Ge, La, Nd, Pr, Te, Ti and Y in the Canadian population aged 3–79 years were below their respective method reporting limit (MRL). Two elements, Bi and Li were detected in 5 % and 66 % of the Canadian population. The median Li concentration was 0.47 μg/L. ConclusionThe results of this study provide information on concentrations of these elements in the Canadian population which can be utilized to characterize exposure in screening assessments and there by the potential for harm to human health. In addition, this study provides baseline HBM data which can be used as a comparative HBM dataset for other populations with similar exposure patterns.

Comparison of the Sterilization Efficiency of 3 Disinfectants for Dropped Anterior Cruciate Ligament Grafts: A Systematic Review and Meta-analysis.

Background:The inadvertent contamination of anterior cruciate ligament (ACL) grafts can occur if they are accidentally dropped on the floor during ACL reconstruction. There has been no meta-analysis conducted to compare the sterilization efficiency of the different disinfectants used on dropped ACL grafts.Purpose:To compare the sterilization efficiency of 3 disinfectants to decontaminate ACL grafts as necessary.Study Design:Systematic review.Methods:A systematic literature review was performed using the MEDLINE, Embase, and Cochrane Library databases. All studies reporting the management of dropped or contaminated grafts were considered for this meta-analysis.Results:A total of 7 studies meeting inclusion criteria were identified from a literature search. The pooled results of this meta-analysis indicated that the rate of positive cultures of ACL grafts dropped on the operating room floor was 44.9% and that the commonly contaminated microbes were staphylococci and bacilli. The meta-analysis results indicated that the sterilization efficiency of a 4% chlorhexidine solution was superior to an antibiotic solution (odds ratio [OR], 0.17 [95% CI, 0.05-0.57]; P = .004) and a 10% povidone-iodine solution (OR, 0.04 [95% CI, 0.01-0.20]; P < .0001). Further, the antibiotic solution was superior to the 10% povidone-iodine solution (OR, 0.20 [95% CI, 0.07-0.55]; P = .002).Conclusion:The results of our meta-analysis demonstrated that staphylococci and bacilli were the most common contaminants on dropped ACL grafts and that decontamination using a 4% chlorhexidine solution more reliably disinfected ACL grafts. This information can help to guide surgeons as regards appropriate remedial measures.

Biodegradation of Weathered Petroleum Hydrocarbons Using Organic Waste Amendments

Extraction, transport, and processing of petroleum products have resulted in inadvertent contamination of soil. Various technologies have been proposed for removal of petroleum hydrocarbon contaminants, including biological techniques. Treatment of aged (weathered) petroleum compounds is challenging, as these wastes tend to be enriched with recalcitrant hydrocarbons. The purpose of the reported study was to investigate remediation of weathered petroleum via simulated landfarming using selected soil amendments. Soil contaminated by aged crude petroleum from well fields in the southern Zagros region in Iran was treated in combination with plant compost, papermill sludge, activated carbon, and molasses. Over 15 weeks, the greatest percentage removal (40%) of total petroleum hydrocarbons (TPH) occurred in the molasses treatment, followed by a 29% reduction in the plant compost treatment. The degradation constant (k), produced by a kinetic model, demonstrated the performance of the molasses over the other treatments applied; experimental data adequately fitted into first-order kinetics (k = 0.005 d−1, t½ = 71 d). Benzene decomposition was greatest (77 and 74%) in the molasses and activated carbon treatments, respectively, and was lowest in the papermill sludge treatment (41%). FTIR analysis revealed loss of benzene in all treatments. Bacterial counts were highest (4.9 × 106 CFU/g) in the plant compost treatment and lowest (1 × 105 CFU/g) in the untreated oil-contaminated soil. Based on the findings of the current study, it is possible to successfully conduct landfarming of aged petroleum deposits; however, it is recommended that common and inexpensive amendments such as molasses and plant compost be used when feasible.

Tracing Styphnolobium japonicum (syn: Sophora japonica) as a potential adulterant of ginkgo-containing foods by real-time PCR

The rising demand for ginkgo-containing products and their high economic value make them desirable targets for adulteration, particularly by the partial substitution with other plant species. Styphnolobium japonicum (plant rich in flavonol glycosides) is known as a potential adulterant of ginkgo-based foods. Therefore, this work aimed at developing a species-specific real-time polymerase chain reaction (qPCR) method for the identification/quantification of S. japonicum as an adulterant of ginkgo-containing products. The method used the EvaGreen dye, targeting the internal transcribed spacer 2 (ITS2) region of S. japonicum, providing acceptable performance parameters and a sensitivity down to 0.02 pg of DNA. Moreover, a qPCR assay was established using binary mixtures of S. japonicum in G. biloba, covering the dynamic range of 50−0.05% (w/w) of added adulterant. After trueness evaluation with blind samples, the approach was applied to 21 commercial herbal infusions, from which one was positive to S. japonicum, but below the limit of quantification (0.05 %), suggesting its inadvertent contamination rather than adulteration. To the best of our knowledge, for the first time, a specific method was proposed to quantify potential adulterations of G. biloba products with S. japonicum, providing an accurate and cost-effective tool to authenticate ginkgo-containing herbal foods.

Europa Clipper planetary protection probabilistic risk assessment summary

Protecting Jupiter’s Icy Moons from the Earth’s biological contamination is a key consideration for the Europa Clipper mission. The mission’s goal is to explore Jupiter’s moon, Europa, and investigate its habitability. The mission must satisfy NASA’s Planetary Protection (PP) requirements specified in the NASA Procedural Requirement (NPR) 8020.12D. The NPR states, “The probability of inadvertent contamination of an ocean or other liquid water body must be less than 1 ​× ​10−4 per mission.” The NPR defines contamination as “the introduction of a single viable terrestrial microorganism into a liquid-water environment”. The probabilistic nature of the requirement demands a probabilistic response. The Europa Clipper team at NASA’s Jet Propulsion Laboratory has developed an end-to-end probabilistic risk assessment (PRA) in order to demonstrate requirement compliance and inform design decisions.This Planetary Protection PRA conservatively assesses the unanticipated events that would need to coincide for the Europa Clipper mission to contaminate an ocean on one of Jupiter’s icy moons. This quantification requires a model of: spacecraft failure scenarios and the potential that these scenarios result in an icy body impact; expected geological resurfacing timescales that may introduce transported Earth biology to interstitial liquid water; and an assessment of biological mortality throughout the journey from Earth to the subsurface ocean. The motivation behind the development of this PRA is to determine the proper amount of bioburden reduction required prelaunch in order to achieve the NPR risk threshold, while minimizing programmatic and mission risk. Previous mathematical approaches have failed to offer such guidance, resulting in over or under-specified microbial reduction protocols and greater risk either to the exploration target or to the mission.If sterilizing spacecraft hardware is the sole solution employed to meet NASA’s planetary protection requirement, the PRA results show a 13-log bioburden reduction prelaunch is necessary. Most spaceflight electronics and optics cannot endure such microbial reduction protocols, or doing so would decrease part reliability to the point of being counter-productive. The Project, therefore, seeks to show compliance with the NPR by demonstrating the probability is sufficiently small that Europa Clipper inadvertently impacts an icy moon and subsequently delivers a fragment of hardware onto a piece of Europa that resurfaces by the year 3000 (within the 1000 year period of biological exploration). The Project does not seek to demonstrate that the hardware would be sterile if such an unlikely event sequence were to occur.This model introduces key improvements over previous planetary protection models. It affords an exact, interdependent, mathematically rigorous, end-to-end methodology for quantifying the probability of transmitting biologically viable contaminants from one planetary body to another. The model and specific findings, as they relate to the Europa Clipper mission, are explored at a summary level in this paper, along with implications of the model’s improvements. This work provides a cornerstone for future missions that are required to perform a planetary protection probabilistic risk assessment, such as Europa Lander and Mars Sample Return.

Validation of a MS Based Proteomics Method for Milk and Egg Quantification in Cookies at the Lowest VITAL Levels: An Alternative to the Use of Precautionary Labeling.

The prevalence of food allergy has increased over the last decades and consequently the food labeling policies have improved over the time in different countries to regulate allergen presence in foods. In particular, Reg 1169 in EU mandates the labelling of 14 allergens whenever intentionally added to foods, but the inadvertent contamination by allergens still remains an uncovered topic. In order to warn consumers on the risk of cross-contamination occurring in certain categories of foods, a precautionary allergen labelling system has been put in place by food industries on a voluntary basis. In order to reduce the overuse of precautionary allergen labelling (PAL), reference doses and action limits have been proposed by the Voluntary Incidental Trace Allergen Labelling VITAL project representing a guide in this jeopardizing scenario. Development of sensitive and reliable mass spectrometry methods are therefore of paramount importance in this regard to check the contamination levels in foods. In this paper we describe the development of a time-managed multiple reaction monitoring (MRM) method based on a triple quadrupole platform for milk and egg quantification in processed food. The method was in house validated and allowed to achieve levels of proteins lower than 0.2 mg of total milk and egg proteins, respectively, in cookies, challenging the doses recommended by VITAL. The method was finally applied to cookies labeled as milk and egg-free. This method could represent, in perspective, a promising tool to be implemented along the food chain to detect even tiny amounts of allergens contaminating food commodities.