High-level Structure Research Articles

Transmembrane Ion Channels: From Natural to Artificial Systems.

Natural channel proteins allow the selective permeation of ions, water or other nutritious entities across bilayer membranes, facilitating various essential physiological functions in living systems. Inspired by nature, chemists endeavor to simulate the structural features and transport behaviors of channel proteins through biomimetic strategies. In this review, we start from introducing the inherent traits of channel proteins such as their crystal structures, functions and mechanisms. Subsequently, different kind of synthetic ion channels including their design principles, dynamic regulations and therapeutic applications were carefully reviewed. Finally, the potential challenges and opportunities in this research field were also carefully discussed. It is anticipated that this review could provide some inspiring ideas and future directions towards the construction of novel bionic ion channels with higher-level structures, properties, functions and practical applications.

A bird’s-eye view reveals no fixed differences in plumage coloration between divergent populations of Painted Buntings

AbstractIn birds, the process of speciation is closely associated with transitions in ornamentation, including coloration, plumage pattern, and song. To investigate the origins of these shifts and their connection to genetic changes, we conducted a study on one of the most highly ornamented songbirds, the Painted Bunting (Passerina ciris). The male Painted Buntings exhibits a stunning array of colors, with a red chest, blue head, green back, green coverts, and pink rump. In addition, Painted Buntings show a high level of genetic structure, with eastern and western populations that have fixed genetic differences in both nuclear and mitochondrial genes. Using non-invasive spectrophotometry techniques, we measured the coloration of six plumage patches on 88 museum specimens of male Painted Buntings in definitive plumage from across the range of the species. We predicted that there would be divergence between the genetically distinct eastern and western populations in ornamental coloration that is perceptible to a bunting but imperceptible to a human observer. However, we measured no consistent nor substantial difference in the plumage coloration of males from different populations. The observation of substantial divergence in nuclear and mitochondrial genotype with no change in ornamental coloration between populations of a brightly colored bird has important implications for the role of sexual selection in the process of speciation.

Neural Style Transfer, Creating Art with Deep Learning

Abstract—Neural style transfer is a deep learning technique that is the topic of study in this research paper. In NST two images are combined, a content and a style image. Where, while retaining the content image the artistic style of style image is imposed on the content image. In this research, a series of ways are explored to improve the efficiency and visual quality of the generated image. This research is about improvising and molding the existing losses, to improve the existing methodologies. Key contributions are dynamic weighting of content and style losses, multi scale loss computation for preserving the details in a better way. This kind of loss improvisation and changing is being used, so that not only the high-level structures and fine details are maintained in the image generated. These dynamic and multiple kind of losses will be implemented to retain the essence of the content in the content image. While generating a new image the content or style is overcompensated and most of the time one of these is having a stronger effect on the final image in most of the techniques, our motive is to eradicate the same and generate an excellent image. Along with this, various optimization techniques are studied in the underlying paper to compensate this computation cost of the newly introduced losses. The ways provide a framework for a neural style transfer with a higher quality and efficient combining of images. Index Terms—NST (Neural style transfer), dynamic weighting, multi-scale losses.

Recent Advances in Fluorescent Probes for G-quadruplex DNAs / RNAs.

Guanine-quadruplexes (G4s) are high-level structures formed by the folding of guaninerich nucleic acid sequences. G4s play important roles in various physiological processes, such as gene transcription, replication, recombination, and maintenance of chromosomal stability. Specific and sensitive monitoring of G4s lays the foundation for further understanding the structure, content, distribution, and function of G4s in organisms, which is important for the treatment and diagnosis of diseases. Moreover, visualization of G4s will provide new ideas for developing antitumor strategies targeting G4s. The design and development of G4-specific ligands are challenging due to the subtle differences in the structure of G4s. This review focuses on the progress of research on G4 fluorescent probes and their binding mechanisms to G4s. Finally, the challenges and future prospects for better detection and targeting of G4s in different organisms are discussed. This paper provides ideas for the development of novel G4 fluorescent probes.

Structured, Inbred and Plastic: the Genome and Population Genetics of the weed False cleavers (Galium spurium)

Abstract False cleavers (Galium spurium L.) is an aggressive weed from the Rubiaceae. Here we assemble a chromosome scale draft of its genome, laying the foundations for determining the genetic basis of auxinic herbicide resistance and for systematic research into its polyphyletic genus. We use the genome to examine the population genetics in material from the Canadian Prairies and, in concert with a common greenhouse experiment, to examine whether the phenotypic variation observed in the field results primarily from genetic or environmental factors. The genome assembly covers approximately 85% of G. spurium’s expected 360Mbp genome size with 94% of BUSCO genes complete and most single copy (89%). Approximately 37% of the genome is repetitive elements and 35,540 genes were annotated using RNA-Seq data, including 100 homologs for genes involved or, potentially involved in, herbicide resistance. The genome shows strong synteny with other members of the Rubiaceae including smooth bedstraw (Cruciata laevipes Opiz) and robusta coffee [Coffea canephora (Pierre ex Froehner]. Double digested RADseq data for the 19 populations from the Canadian Prairies indicated that G. spurium has high levels of population structure (FST = 0.54) and inbreeding (FIS =0.86) with low levels of hetrozygosity (HO = 0.02) and nucleotide diversity (π = 0.0003). Variation in flowering time and seed weight largely overlapped among populations grown in the greenhouse. A redundancy analysis investigating genotype-phenotype associations showed few associations between SNP variation and these characteristics. In contrast, the majority of SNPs under selection were associated with mericarp hook density. This suggests that for most traits, environmental variation rather than genetic variation likely underlies phenotypic differences observed in the field. Several genes of interest including several homologs involved in the assembly of the Skp1-Culliun-F-Box IR1/AFB E3 ubiquitin ligase complex (e.g. CAND1, ECR1) are located in areas of the genome with evidence of selection and are targets for further investigation.

Crosslinking intensity modulates the reliability and sensitivity of chromatin conformation detection at different structural levels

Formaldehyde (FA) is a chemical that facilitates crosslinking between DNA and proteins. It is widely used in various biochemical assays, such as chromosome conformation capture (3C) and Chromatin Immunoprecipitation (ChIP). While the concentration and temperature of FA treatment are recognized as crucial factors in crosslinking, their quantitative effects have largely remained unexplored. In this study, we employed 3C as a model system to systematically assess the impacts of these two factors on crosslinking. Our findings indicate that the strength of crosslinking significantly influences chromatin conformation detection at nearly all known structural levels. Specifically, a delicate balance between sensitivity and reliability is required when detecting higher-level structures, such as chromosome compartments. Conversely, intense crosslinking is preferred when targeting lower-level structures, such as topologically associated domains (TADs) or chromatin loops. Based on our data, we propose a conceptual molecular thermal motion model to elucidate the roles of these two factors in restricting FA crosslinking. Our results not only shed light on the previously overlooked confounding factor in FA crosslinking but also highlight the need for caution in new technology developments that rely on FA crosslinking.

Implementation and improvement of Integrated Management Systems: recommendations for their adaptation to the ISO High-Level structure

In the face of the high competitiveness in the marketplace, many companies have sought ways to differentiate themselves from others by improving the quality of their products and services, reducing the environmental impact, and ensuring employee safety. In this context, many companies implemented some management systems such as ISO 9001 (Quality Management), ISO 14001 (Environmental Management), and ISO 45001 (Occupational Health and Safety Management) to improve their performance. The International Organization for Standardization (ISO) created in 2012 a high-level structure (Annex SL) that serves as the basis for the development and integration of these Certifiable Management systems (CMSs), making them more compatible and effective. However, many companies do not have sufficient expertise about the latest versions of ISO 9001 and ISO 14001 and about the publication of ISO 45001 based on the structure proposed by Annex SL, bringing difficulties for their Integrated Management Systems (IMS). The objective of this work is to propose recommendations that direct companies to adapt their IMSs to the modifications arising from Annex SL. To develop this study, four case studies were made in Brazilian industrial companies with the following data collection instruments (semi-structured interviews, on-site observation, and document analysis). Our case studies were carried out in large companies because these types of organizations generally have more than two management systems implemented, and our article focuses on systems integration. In addition, these companies develop several interesting solutions that can serve as benchmarking for small and medium-sized companies. With this study it was possible to develop guidelines related to greater emphasis on the analysis of the organizational context; the importance of promoting a culture of integration; the need for leadership responsible for the integration of CMSs, etc. The main scientific contribution of this work was to deepen and update the theory about certifiable management systems and IMS according to the results obtained from empirical studies. The main applied contribution of this study is to generate a competitive advantage for the company over its competitors by providing leaders with management solutions that make it possible to implement or improve IMS based on the modifications resulting from Annex SL.

Breaking down a golf swing: Spatio-temporal dynamics of visual motion underlie high-level structuring of observed actions

Breaking down a golf swing: Spatio-temporal dynamics of visual motion underlie high-level structuring of observed actions

Constraint-based reasoning in cell biology: on the explanatory role of context.

Cell biologists, including those seeking molecular mechanistic explanations of cellular phenomena, frequently rely on experimental strategies focused on identifying the cellular context relevant to their investigations. We suggest that such practices can be understood as a guided decomposition strategy, where molecular explanations of phenomena are defined in relation to natural contextual (cell) boundaries. This "top-down" strategy contrasts with "bottom-up" reductionist approaches where well-defined molecular structures and activities are orphaned by their displacement from actual biological functions. We focus on the central role of microscopic imaging in cell biology to uncover possible constraints on the system. We show how identified constraints are used heuristically to limit possible mechanistic explanations to those that are biologically meaningful. Historical examples of this process described here include discovery of the mechanism of oxidative phosphorylation in mitochondria, molecular explanation of the first steps in protein secretion, and identification of molecular motors. We suggest that these instances are examples of a form of downward causation or, more specifically, constraining relations, where higher-level structures and variables delimit and enable lower-level system states. The guided decomposition strategy in our historical cases illustrates the irreducibility of experimentally identified constraints in explaining biological activities of cells. Rather than viewing decomposition and recomposition as separate epistemic activities, we contend that they need to be iteratively integrated to account for the ontological complexity of multi-level systems.

Segmenting and Predicting Musical Phrase Structure Exploits Neural Gain Modulation and Phase Precession.

Music, like spoken language, is often characterized by hierarchically organized structure. Previous experiments have shown neural tracking of notes and beats, but little work touches on the more abstract question: how does the brain establish high-level musical structures in real time? We presented Bach chorales to participants (20 females and 9 males) undergoing electroencephalogram (EEG) recording to investigate how the brain tracks musical phrases. We removed the main temporal cues to phrasal structures, so that listeners could only rely on harmonic information to parse a continuous musical stream. Phrasal structures were disrupted by locally or globally reversing the harmonic progression, so that our observations on the original music could be controlled and compared. We first replicated the findings on neural tracking of musical notes and beats, substantiating the positive correlation between musical training and neural tracking. Critically, we discovered a neural signature in the frequency range ∼0.1 Hz (modulations of EEG power) that reliably tracks musical phrasal structure. Next, we developed an approach to quantify the phrasal phase precession of the EEG power, revealing that phrase tracking is indeed an operation of active segmentation involving predictive processes. We demonstrate that the brain establishes complex musical structures online over long timescales (>5 s) and actively segments continuous music streams in a manner comparable to language processing. These two neural signatures, phrase tracking and phrasal phase precession, provide new conceptual and technical tools to study the processes underpinning high-level structure building using noninvasive recording techniques.

TypeQL: A Type-Theoretic & Polymorphic Query Language

Relational data modeling can often be restrictive as it provides no direct facility for modeling polymorphic types, reified relations, multi-valued attributes, and other common high-level structures in data. This creates many challenges in data modeling and engineering tasks, and has led to the rise of more flexible NoSQL databases, such as graph and document databases. In the absence of structured schemas, however, we can neither express nor validate the intention of data models, making long-term maintenance of databases substantially more difficult. To resolve this dilemma, we argue that, parallel to the role of classical predicate logic for relational algebra, contemporary foundations of mathematics rooted in type theory can guide us in the development of powerful new high-level data models and query languages. To this end, we introduce a new polymorphic entity-relation-attribute (PERA) data model, grounded in type-theoretic principles and accessible through classical conceptual modeling, with a near-natural query language: TypeQL. We illustrate the syntax of TypeQL as well as its denotation in the PERA model, formalize our model as an algebraic theory with dependent types, and describe its stratified semantics.

Dragons in the tropics – Phylogeography and speciation in Diporiphora lizards and common geographic breaks in co-distributed taxa

Co-distributed taxa can respond both similarly or differently to the same climatic and geological events, resulting in a range of phylogeographic patterns across the region. Using a nested approach on a taxonomically diverse yet morphologically conservative group of agamid lizards, we first aimed to evaluate more precisely the extent of phylogeographic structuring within the genus. Then, focusing on four lineages within the more widespread species, we assessed the impact of biogeographic barriers on phylogeographic structuring and demographic history of species, comparing to patterns previously observed in co-distributed taxa. These species occur in the Australian Monsoonal Tropics, a vast tropical savanna system with high richness and endemism associated with environmental heterogeneity and past climate fluctuations. The employment of genomic data helped to determine the relationships between specific taxa that were previously difficult to place. We found a local influence of biogeographic and climatic breaks on population dynamics, analogous to other species. We detected high levels of population structure in the West Kimberley and Arnhem Plateau, which are already known for high endemism. However, we also highlighted unique lineages in areas that have been overlooked until recently, in the South Kimberley and West Top End. Climatic and geographical features in the Arnhem Plateau act as a soft barrier between populations in the east and west regions of the Top End. These observations reflect patterns observed for other vertebrates across this rich biome, indicating how climatic variation, species’ ecology, and landscape features interact to shape regional diversity and endemism.

Integrating management systems in the energy sector: the case of the electricity industry in New Zealand

The New Zealand Electricity Engineers Association (EEA) asked for advice about development of a guide for a public safety management system (PSMS) for electricity distribution networks based on ISO45001 Occupational health and safety management systems. This would help eliminate overlap between legislation and standards while maintaining compliance with legal requirements. At Victoria University of Wellington we have been working on such an integrated approach and this article reports on the project and suggests how the results can be extended to include other areas of management while retaining the ability for appropriate elements to be audited and certified in accordance with systems required by legislation. The project reviewed an earlier report and literature review on PSMS for the Electricity Networks Association. Development of the legal requirements for a PSMS were reviewed and use of the International Standards Organization (ISO) framework for all management system standards proposed to encompass ISO45001 and similar standards. Relevant management content was incorporated in the high-level structure and key stakeholders contributed technical content. Use of the ISO Annex SL as a template enabled development of an integrated management system incorporating other management system standards, that would still support legal compliance while enabling elimination of duplication and clutter, and waste of resources at a time of technology change. The work was carried out in New Zealand (NZ) and may not apply in other countries with different legal requirements. Auditors may resist integrated management systems although this may not be a limitation if documentation is appropriately written. The electricity networks businesses in NZ may move to implementation of the PSMS guide but this will be an internal decision and results may take some years to declutter documentation and reduce overlapping audits under management system standards. Over the next decade the context of the New Zealand electricity industry will undergo major shifts with the need to adapt to increasing expectations for occupational health and safety and public safety, adaptation to climate change and accelerated implementation of new technologies. The electricity industry will need to apply its resources to those changes while avoiding duplicated efforts to implement multiple management systems. Developing an integrated management system that incorporates several management systems and public safety may aid protection of non-workers who cannot otherwise be “controlled” by a business.

Partial melting mechanisms of peraluminous felsic magmatism in a collisional orogen: An example from the Khondalite belt, North China craton

AbstractSedimentary‐derived (S‐type) granites are an important product of orogenic metamorphism, and a range of subtypes can be recognized by differences in field occurrence, mineralogy and geochemistry. These subtypes can reflect variations of initial protolith composition, partial melting reactions, pressure and temperature of anatexis, or magmatic processes that occur during ascent through the crust (e.g. mineral fractional crystallization or crustal assimilation). Together, these diverse factors complicate geological interpretation of the history of peraluminous felsic melt fractions in orogenic settings. To assess the influence of these factors, we performed integrated field investigation, petrology, geochemistry, geochronology and phase equilibrium modelling on a series of leucosomes within migmatite associated with different S‐type granites within the Khondalite belt, North China craton (NCC), which is an archetypal collisional orogen. Three types of leucosome are recognized in the east Khondalite belt: leucogranitic leucosome, K‐feldspar (Kfs)‐rich granitic leucosome and garnet (Grt)‐rich granitic leucosome. Phase equilibrium modelling of partial melting and fractional crystallization processes indicate that the leucogranitic leucosomes were mostly produced through fluid‐present melting, Kfs‐rich granitic leucosomes are produced through muscovite dehydration melting with 3 vol.% garnet fractional crystallization, and Grt‐rich granitic leucosomes are produced through biotite dehydration melting with 20–40 vol.% K‐feldspar fractional crystallization and up to 20 vol.% peritectic garnet entrainment. Mineral fractional crystallization and peritectic mineral entrainment occur in the source during melting, and play equally important roles in partial melting mechanisms in terms of affecting the geochemical compositions of granitic melts. Thus, we suggest that peraluminous felsic magmas preserved in collisional orogens are dominantly produced by fluid‐absent melting in the middle to deep continental crust, although extraction of low‐volume melt fractions from an anatectic source region at shallower depths during fluid‐present melting can also generate small amounts of S‐type granites that subsequently crystallize at high structural levels in the crust.

Closing the Innovation Performance Gap: Open Innovation in Military Bureaucracies

This article explores the effects of open innovation on innovation performance in military bureaucracies. While the understanding of how bureaucratic organizations can benefit from open innovation is still limited, this study discovered that open innovation can have a negative effect on innovation performance. However, leveraging an innovative culture can lead to improved innovation performance in organizations characterized by high levels of structure and hierarchy, especially those where secrecy and security are of vital importance.

Reservoir characterization of the Abu Roash D Member through petrography and seismic interpretations in Southern Abu Gharadig Basin, Northern Western Desert, Egypt

This research combines petrography and seismic analysis to assess the Upper Cretaceous Abu Roash (AR)/D’s carbonate member composition in the Southwest Abu-Sennan oil field in the Southern Abu Gharadig Basin within the Northern Western Desert of Egypt. Various datasets were used, including petrographic thin sections, and electrical well logs for four stratigraphic wells (01, -02, -03, and, -04), along with a time domain seismic dataset covering the study area. Petrographic analysis across multiple depths and intervals has provided valuable insights. Well-01 demonstrates mud-wackstone with diverse mineral components at 1671–74 m MD, indicating favorable reservoir quality. Well-02 exhibits diverse compositions at intervals 1740–43 m MD and 1746–49 m MD, also showcasing good reservoir quality. Well-03 reveals a packstone rock type at 1662–65 m MD with favorable reservoir characteristics. Well-04 displays peloids Wack-Packstone and Oolitic Packstone at intervals 1764–67 m MD and 1770–73 m MD, respectively, both indicating good reservoir quality. Integrating the petrography and seismic attributes results concerning the structural level of AR/D concerning the used wells, it's evident that Well-03 stands out due to its relatively high structural level, drilled near a major fault, revealing distinct fracture sets that contribute to a notably high reservoir quality as depicted in the RMS amplitude and Ant track attributes maps. AR/D reservoir levels in wells 02, and, 04, are relatively positioned at structurally lower levels, and face challenges with overburden pressure and mechanical compaction, resulting in diminished facies quality for the reservoir. Seismic attributes like the Ant track and RMS amplitude indicated that the presence of fractures within the AR/D Member's carbonate is linked to the prevalence of interpreted normal faults. The implemented procedure in this research can be applied to enhance comprehension of AR/D carbonate reservoirs in adjacent regions, thereby increasing the hydrocarbon exploration possibilities.

Highly structured populations of copepods at risk to deep-sea mining: Integration of genomic data with demogenetic and biophysical modelling.

Copepoda is the most abundant taxon in deep-sea hydrothermal vents, where hard substrate is available. Despite the increasing interest in seafloor massive sulphides exploitation, there have been no population genomic studies conducted on vent meiofauna, which are known to contribute over 50% to metazoan biodiversity at vents. To bridge this knowledge gap, restriction-site-associated DNA sequencing, specifically 2b-RADseq, was used to retrieve thousands of genome-wide single-nucleotide polymorphisms (SNPs) from abundant populations of the vent-obligate copepod Stygiopontius lauensis from the Lau Basin. SNPs were used to investigate population structure, demographic histories and genotype-environment associations at a basin scale. Genetic analyses also helped to evaluate the suitability of tailored larval dispersal models and the parameterization of life-history traits that better fit the population patterns observed in the genomic dataset for the target organism. Highly structured populations were observed on both spatial and temporal scales, with divergence of populations between the north, mid, and south of the basin estimated to have occurred after the creation of the major transform fault dividing the Australian and the Niuafo'ou tectonic plate (350 kya), with relatively recent secondary contact events (<20 kya). Larval dispersal models were able to predict the high levels of structure and the highly asymmetric northward low-level gene flow observed in the genomic data. These results differ from most studies conducted on megafauna in the region, elucidating the need to incorporate smaller size when considering site prospecting for deep-sea exploitation of seafloor massive sulphides, and the creation of area-based management tools to protect areas at risk of local extinction, should mining occur.

Genetic variation and structure of endemic and endangered wild celery (Kelussia odoratissima Mozaff.) quantified using novel microsatellite markers developed by next-generation sequencing.

Kelussia odoratissima Mozaff. (Apiaceae) is a native plant that has been traditionally consumed in Iran's food and pharmaceutical industries. Overharvesting of the taxon, especially at the beginning of the growing season, due to its considerable medicinal and economic value, is believed to be the main reason for the extirpating of this plant. The consequences of the severe anthropogenic impacts on the genetic diversity of populations are poorly known. In order to investigate the level of genetic variation and patterns of the genetic structure of K. odoratissima, we developed novel microsatellite markers using the 454 Roche next-generation sequencing (NGS) platform for the first time. Out of 1,165 microsatellite markers bioinformatically confirmed, twenty-five were tested, of which 23 were used to screen genetic variation across 12 natural populations. Our results showed that the average number of alleles per locus and the polymorphic information content (PIC) were 10.87 (range 7 to 27), and 0.81 (range 0.67 to 0.94), respectively. The mean observed and expected heterozygosities (± SD) across all populations were 0.80 ± 0.31 and 0.72 ± 0.14, respectively. The average pairwise FST among the populations was 0.37 (range 0.04 to 0.81). Bayesian and distance-based clustering, and principal coordinate analyses revealed at least four major genetic clusters. Although high level of structure can be explained by landscape topography and geographic distance, presence of admixed populations can be associated to seed or pollen dispersal. Contrary to expectations, the high level of genetic variation and lack of inbreeding suggest that overexploitation has not yet significantly purged the allelic variability within the natural populations in protected areas.

The Startψell initiative in Action: A Project supporting Early-career Consultant Psychiatrists in a Southeast UK mental health trust.

IntroductionTransition to a consultant role is a challenging time for an early career psychiatrist, as the high level of structure and guidance available during psychiatric training ceases when training is complete. The Royal College of Psychiatrists, UK therefore pioneered the Startψell initiative to ease this transition. This consultant-led initiative proposed embedding good habits and robust coping mechanisms early on, to enable psychiatrists to thrive in their roles and is based on six main pillars (New consultants (StartWell) (rcpsych.ac.uk) Image 1: Startwell framework. Berkshire Healthcare NHS Foundation Trust (BHFT) is a mental healthcare provider based in Southeast England where we designed a project to enhance support to new consultants, based on Startψwell principles.ObjectivesThe aims of this project were to: -Improve the experience of early career psychiatrists taking on their first consultant role in BHFT.-Ensure that the new consultants are provided with relevant information and resources to fulfil their roles safely.-Set up a system for ongoing support for new consultants till they complete five years in their post.MethodsHaving discussed the feasibility of setting up a local Startwell initiative in BHFT, plans were presented to the medical director and medical staff committee including new consultants, for their input. Under the guidance from senior consultants, monthly meetings were arranged which offered professional development talks and peer support. As several themes emerged at these meetings, we stratified and aligned these local to the RCPsych Startψell framework (Image 2:Themes). An induction folder was also collated with all the relevant information in paper and digital format. In addition, a yearly bespoke induction event for new consultant psychiatrists was delivered from 2019-2022 except in 2021, during the pandemic.ResultsWe used Likert scales to gather quantitative feedback (Table 1) with free box for comments to capture qualitative feedback (Image 3). Feedback response rate for the three cohorts were 75%, 70% and 80% respectively.201920202022Overall Satisfaction100%75%100%How relevant was the content of the programme to your new role?70%100%100%How far did the programme meet your expectations?100%75%100%Image:Image 2:Image 3:ConclusionsThe BHFT Startwell initiative has been running successfully for the past five years and been valued by the new consultants. We are therefore continuing to working towards embedding the programme futher and ensuring sustainably for the future. W e are looking to share our experience in the hope that similar programmes are set up and our newer colleagues can enjoy a long, fulfilling, and enjoyable career.Disclosure of InterestNone Declared

High response diversity and conspecific density-dependence, not species interactions, drive dynamics of coral reef fish communities.

Species-to-species and species-to-environment interactions are key drivers of community dynamics. Disentangling these drivers in species-rich assemblages is challenging due to the high number of potentially interacting species (the 'curse of dimensionality'). We develop a process-based model that quantifies how intraspecific and interspecific interactions, and species' covarying responses to environmental fluctuations, jointly drive community dynamics. We fit the model to reef fish abundance time series from 41 reefs of Australia's Great Barrier Reef. We found that fluctuating relative abundances are driven by species' heterogenous responses to environmental fluctuations, whereas interspecific interactions are negligible. Species differences in long-term average abundances are driven by interspecific variation in the magnitudes of both conspecific density-dependence and density-independent growth rates. This study introduces a novel approach to overcoming the curse of dimensionality, which reveals highly individualistic dynamics in coral reef fish communities that imply a high level of niche structure.