The physical limnology of a shallow pond system was characterized using field measurements of water temperature, pH, and electrical conductivity (EC). We determined the spatial variability in surface and groundwater temperature, pH, and EC along the pond’s shore and along the several pond-shore transects, analyzed the water column temperature gradient and estimated the groundwater discharge rate using a heat transfer model. The fieldwork was conducted in Santa Olalla and Dulce ponds located in Doñana National Park in southwestern Spain during different stages from 2016 to 2018. The results of this study have improved the understanding of the thermal structure and the surface–subsurface heat exchange in the ponds and highlighted the importance of groundwater discharge in the pond water balance. It also showed the heterogeneous nature of groundwater discharge through the bottom sediments of the Santa Olalla pond. These results are consistent with previous studies and strengthen the existing hydrological and limnological knowledge of these ponds located in the protected area which is receiving a great deal of public attention.
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