Greatest Number Of Species Research Articles

Small mammals in natural and agricultural lands of Slobozhanshchyna (eastern Ukraine): results of a five-year-long survey

The study of the species composition, biological and ecological features of small mammals was carried out for five years (2018–2022) in the surroundings of the village of Rozsohuvata (Kharkiv Oblast, Ukraine). During the study period, nine species of mouse-like rodents and three species of insectivorans were detected. The re-search area is represented by a ravine-beam system, agrocoenoses, field-protecting forest strips, riparian vege-tation around artificial reservoirs and streams, dry meadows, and pastures. Trappings of small mammals were carried out on thirty lines of traps. During the entire period of trapping, the dominant species was Sylvaemus uralensis and in some seasons Sylvaemus sylvaticus dominated. Starting from 2018, the relative abundance increased in autumn, reached a peak in 2020 and declined in the following years. In general, 2019 was the year of maximum abundance and most species were recorded in the summer of this year. The greatest number of species was found in the ecotone between riparian vegetation and field (10 species), as well as in the area of the multi-grass steppe in the beam (8 species). The eurytopic species include Sylvaemus uralensis and Syl-vaemus sylvaticus, whereas the stenotopic species is Mus spicilegus. According to the obtained abundance scores, only one species—Myodes glareolus—occurs randomly, whereas the rare species here are Mus spicile-gus, Sorex minutus, and Crocidura suaveolens. Six species are non-abundant: Apodemus agrarius, Sylvaemus tauricus, Mus musculus, Microtus levis, Cricetulus migratorius, and Sorex araneus. Only Sylvaemus sylvaticus belongs to common species, and only Sylvaemus uralensis is abundant. It should be mentioned that Cri-cetulus migratorius, which usually belongs to the category of random or rare species, turned out to be non-abundant in the study region, and it was recorded regularly in almost half of the studied biotopes. Myodes glareolus, which usually prefers oak forest, was extremely rare. The abundance of Apodemus agrarius, which usually belongs to common species in river valleys, was also low. Sylvaemus showed greater ecological valence, dominated in abundance and inhabited most biotopes, except for Sylvaemus tauricus, which began to occur only in the last two years and mainly in forest strips.

Bacterial identification in cerebrospinal fluid of domestic species with neurologic signs: a retrospective case-series study in 136 animals (2005-2021).

Central nervous system (CNS) infections comprise life-threatening clinical conditions in domestic species, and are commonly related to severe sequelae, disability, or high fatality rates. A set of bacterial pathogens have been identified in central nervous infections in livestock and companion animals, although the most of descriptions are restricted to case reports and a lack of comprehensive studies involving CNS-related bacterial infections have been focused on a great number of domestic species. In this scenario, we retrospectively investigated selected epidemiological data, clinical findings, bacteriological culture, and in vitro susceptibility patterns of 136 nonrepetitive neurologic cases in domestic species (2005-2021). Bacterial isolates were recovered from 25% (34/136) of the cerebrospinal fluid (CSF) sampled. The isolates were obtained from cattle (9/136 = 6.6%), dogs (7/136 = 5.1%), horses (6/136 = 4.4%), goats (3/136 = 2.2%), pigs (3/136 = 2.2%), sheep (3/136 = 2.2%), cats (2/136 = 1.5%), and asinine (1/136 = 0.7%). Among animals with bacterial isolation, Staphylococcus aureus (6/34 = 17.6%), Escherichia coli (5/34 = 14.7%), Staphylococcus beta-hemolytic (5/34 = 14.7%), and Trueperella pyogenes (3/34 = 8.8%) were predominant, in addition to a miscellaneous of other bacteria isolated in minor frequency, e.g., Corynebacterium pseudotuberculosis, Enterobacter cloacae, Mannheimia haemolytica, Pseudomonas aeruginosa, and Streptococcus equi subsp. equi. In vitro susceptibility tests of isolates revealed that amoxicillin/clavulanic acid (11/13 = 84.6%), cephalexin (9/11 = 81.8%), and florfenicol (9/12 = 75%) were the most effective antimicrobials. Conversely, isolates exhibited resistance mainly to tetracycline (6/10 = 60%), penicillin (6/11 = 54.5%), and trimethoprim/sulfamethoxazole (5/11 = 45.5%). Also, multidrug resistance to ≥ 3 classes of antimicrobials was found in 23.5% (8/34) strains. Data relative to the outcome was available in 79.4% (27/34) of animals that had bacterial isolation, and from these, the lethality rate was 92.6% (25/27). Incoordination (14/34 = 41.2%), recumbency (11/34 = 32.4%), apathy (10/34 = 29.4%), anorexia (9/34 = 26.5%), blindness (7/34 = 20.6%), seizure (6/34 = 17.6%), limb paresis (5/34 = 14.7%), head-pressing (4/34 = 11.8%), and nystagmus (3/34 = 8.8%) were the most frequent clinical signs. A variety of bacterial pathogens were identified in the CSF of domestic species showing neurologic signs, with a predominance of staphylococci, streptococci, and enterobacteria. High lethality of cases, poor in vitro efficacy of conventional antimicrobials, and a high in vitro multidrug resistance pattern of isolates were seen. Our results contribute to etiological characterization, antimicrobial resistance patterns, and clinical-epidemiological findings of bacterial infections in domestic species with neurological signs.

Survey on helminths of bats in the Yucatan Peninsula: infection levels, molecular information and host-parasite networks.

Helminth species of Neotropical bats are poorly known. In Mexico, few studies have been conducted on helminths of bats, especially in regions such as the Yucatan Peninsula where Chiroptera is the mammalian order with the greatest number of species. In this study, we characterized morphologically and molecularly the helminth species of bats and explored their infection levels and parasite–host interactions in the Yucatan Peninsula, Mexico. One hundred and sixty-three bats (representing 21 species) were captured between 2017 and 2022 in 15 sites throughout the Yucatan Peninsula. Conventional morphological techniques and molecular tools were used with the 28S gene to identify the collected helminths. Host–parasite network analyses were carried out to explore interactions by focusing on the level of host species. Helminths were found in 44 (26.9%) bats of 12 species. Twenty helminth taxa were recorded (7 trematodes, 3 cestodes and 10 nematodes), including 4 new host records for the Americas. Prevalence and mean intensity of infection values ranged from 7.1 to 100% and from 1 to 56, respectively. Molecular analyses confirmed the identity of some helminths at species and genus levels; however, some sequences did not correspond to any of the species available on GenBank. The parasite–host network suggests that most of the helminths recorded in bats were host-specific. The highest helminth richness was found in insectivorous bats. This study increases our knowledge of helminths parasitizing Neotropical bats, adding new records and nucleotide sequences.

Plant cover is related to vegetation and soil features in limestone screes colonization: A case study in the Italian Alps

Background and aimsStudies that consider the effects of screes plant communities on the soil properties are lacking and whether the plant cover could be used as an indicator of biotic and/or abiotic parameters of the scree colonization has never been assessed. Here we aimed to identify plant communities-soil relationships in the process of colonization of alpine limestone screes.MethodsPlant communities and chemical-physical soil properties were studied on 50 plots from an area of the Italian Alps, and related to plant cover (colonization). Correlation and regression analysis were performed to determine the relationships and define the best trend models.ResultsAt the varying of plant cover, plant communities and the soil properties changed greatly. Floristic analysis especially showed how the pioneer/early stages of colonization revealed a limited number of species (< 20) typical of unstable screes (Thlaspietea rotundifolii) while the late/final stage has a greater number of species (> 25), mainly of basophilic grasslands (Elyno-Seslerietea). Statistical analysis showed high correlation between plant cover and number of species, shear vane strength (τ), soil depth, pH, organic matter (OM), total nitrogen (TN), sand and medium gravel content. The number of species and the values of τ, soil depth, OM, TN and sand content increased over the colonization/succession, albeit with different trends.ConclusionThis research allowed a better comprehension of the phenomenon of colonization of alpine limestone screes and showed how plant cover is a parameter useful to estimate some soil and vegetation features, therefore to facilitate the study/management of these environments.

Waterbodies in the Floodplain of the Drava River Host Species-Rich Macrophyte Communities despite Elodea Invasions

The contribution discusses macrophyte communities in natural and man-made waterbodies located on the active floodplain along the Drava river (Slovenia). We presumed that these different types of wetlands host a great number of macrophyte species, but this diversity may be affected by the presence of alien invasive species Elodea canadensis and E. nuttallii. Presence, relative abundance, and growth forms of plant species along with selected environmental parameters were monitored. Correlation analyses and direct gradient analyses were performed to reveal the possible relations between the structure of macrophyte community and environmental parameters. Number of macrophytes in surveyed water bodies varied from 1 to 23. Besides numerous native species we also recorded Elodea canadensis and E. nuttallii, which were present in 19 out of 32 sample sites, with E. nuttallii prevailing. The less invasive E. canadensis was absent from ponds and oxbow lakes but relatively abundant in side-channels, while E. nuttallii was present in all types but dominant in ponds. The most abundant native species were Myriophyllum spicatum and M. verticillatum, Ceratophyllum demersum and Potamogeton natans. Correlation analyses showed no negative effect of the invasive alien Elodea species to the species richness and diversity of native flora. Positive correlation between the abundance of E. nuttallii and temperature of the water was obtained.

António da Costa Paiva (Barão de Castelo de Paiva) (1806–1879): his malacological collection from Madeira in Universidade de Coimbra, Portugal

The Museu da Ciência da Universidade de Coimbra (MCUC) (Science Museum of the University of Coimbra) hosts an important historical collection of land and freshwater snails from the Madeira Archipelago. This collection of 1,768 specimens (120 recent taxa within 20 families) was recently catalogued and digitized. Specimens in MCUC collections were recognized as being provided by António da Costa Paiva (Barão de Castelo de Paiva). This Portuguese nobleman also donated other mollusc collections to different scientific institutions and natural history museums in Portugal and abroad in the mid nineteenth-century. The study of the origin of the MCUC mollusc collection, beyond the data associated with the specimens, is important to the research on the endangered fauna of the Madeira Archipelago. This work precedes a comprehensive study ongoing in MCUC regarding the species occurrence and the systematic review on a great number of species hosted in the museum collection.

Environmental drivers shaping the macrofungal sporocarp community in Mediterranean Quercus ilex stands

Holm oak is one of the most abundant tree-forming species in the Mediterranean area, hosting a great number of fungal species that are fundamental for the functioning of these forest ecosystems. However, the information about the fungal communities growing in Quercus ilex stands and the environmental drivers shaping their fruiting patterns is still scarce. This study aimed to characterize the productivity, diversity, and community composition of macrofungal sporocarps growing in Mediterranean Quercus ilex stands as shaped by key environmental drivers including meteorological and soil variables. We analysed a data set obtained from the autumn weekly sampling of all macrofungal sporocarps from 8 permanent plots over 13 consecutive years, and related weather and soil variables. We built up several linear mixed-effects models to describe productivity and richness changes over time, in addition to multivariate analyses aiming to describe the community composition variations. We identified 241 macrofungal species that were predominantly ectomycorrhizal, with Russulaceae and Cortinariaceae being the most abundant families. Agaricaceae and Tricholomataceae were the most abundant families of saprotrophic fungi. In addition, soil properties such as pH, organic matter and sand content played a significant role in sporocarp community composition. Our results highlight different drivers shaping different fungal fruiting processes, i.e., weather variables drive sporocarp productivity and sporocarp richness while soil characteristics may have a stronger influence on the aboveground fungal community composition. This study illustrates the high stochasticity of sporocarp occurrence and productivity, with species exhibiting higher values whenever the meteorological conditions were suitable for fungal fruiting.

Non-physical Species in Chemical Kinetic Models: A Case Study of Diazenyl Hydroxy and Diazenyl Peroxide.

Predictive chemical kinetic models often consider hundreds to thousands of intermediate species. An even greater number of species are required to generate pressure-dependent reaction networks for gas-phase systems. As this immense chemical search space is being explored using automated tools by applying reaction templates, it is probable that non-physical species will infiltrate the model without being recognized by the compute or a human as such. These non-physical species might obey chemical intuition as well as requirements coded in the software, e. g., obeying element electron valence constraints, and may consequently remain unnoticed. Non-physical species become an acute problem when their presence affects a model observable. Correcting a pressure-dependent network containing a non-physical species may significantly affect the computed rate coefficient. The present work discusses and analyzes two specific cases of such species, diazenyl hydroxy (⋅N=NOH) and diazenyl peroxide (⋅N=NOOH), both previously suggested as intermediates in nitrogen combustion systems. A comprehensive conformational search did not identify any non-fragmented energy well, and energy scans performed for diazenyl peroxide (⋅N=NOOH), at DFT and CCSD(T) show that it barrierlessly decomposes. This work highlights a broad implication for future automated chemical kinetic model generation, and provides a significant motivation to standardize non-physical species identification in chemical kinetic models.

High-performance reductive decomposition of trichloroacetamide by the vacuum-ultraviolet/sulfite process: Kinetics, mechanism and combined toxicity risk

Trichloroacetamide (TCAcAm) is among of the nitrogenous disinfection by-products (N-DBPs) with high cytotoxicity and genotoxicity, which is usually detected at low concentration (μg/L) in drinking water. In this study, advanced reduction process (ARP) based on vacuum ultraviolet (VUV) was employed to eliminate TCAcAm. Compared with VUV, VUV/sulfide, and VUV/ferrous iron processes, VUV/sulfite process demonstrated excellent performance for TCAcAm decomposition, the higher removal of TCAcAm could be achieved by VUV/sulfite process (85.6 %) than VUV direct photolysis (13.5 %) due to the production of a great number of reactive species. The degradation of TCAcAm followed the pseudo-first-order kinetics well in VUV/sulfite process, and the pseudo-first-order rate constant (kobs) increased with increasing sulfite concentration. Reactive species quenching experiments demonstrated that eaq−, SO3·− and H· were involved in the degradation of TCAcAm. The in situ generated eaq−, SO3·− and HO· via VUV/sulfite process were identified by electron paramagnetic resonance (EPR), and the eaq− was proved to be the dominated species (relative contribution: 83.5 %) for TCAcAm decomposition. The second-order rate constant of TCAcAm with eaq− was determined to be 2.41 × 1010 M−1 s−1 for the first time based on competitive kinetic method. The complete TCAcAm degradation could be achieved at pH > 8.3, while TCAcAm degradation efficiency decreased to 11.9 % at pH 5.8. TCAcAm decay could be divided into two stages: rapid growth (sulfite dosage: 0.25-1.0 mM) and slow growth (sulfite dosage: 1.0-4.0 mM). The yield of eaq− was controlled by sulfite dosage, and the predict yield of eaq− increased from 3.69 × 10−14 to 2.58 × 10−12 M with increasing the sulfite dosage from 0.25 to 4.0 mM by Kintecus 6.80, which resulted in an increase in TCAcAm removal. Meanwhile, the presence of dissolved oxygen (DO), chloride (Cl−), bicarbonate (HCO3−) and humic acid (HA) posed negative influence on TCAcAm decomposition to various degrees. Dichloroacetamide (DCAcAm), trichloroacetic acid (TCAA), dichloroacetic acid (DCAA) and Cl− were identified as intermediate products, indicated that reductive dechlorination and hydrolysis coexisted during the degradation of TCAcAm in VUV/sulfite process.

Research advance in the taxonomy and ecology of Oncaeidae Giesbrecht, 1893

The Oncaeidae is an important family of small copepods in marine ecosystems and is characterized by high diversity and abundance. The family was established by Giesbrecht in the late 19th century. Since then, 115 oncaeid species have been discovered and described. However, Oncaeidae species are small-sized and show considerable morphological similarity. The family includes a great number of sibling species and intraspecific form variants. Consequently, there are large knowledge gaps regarding their taxonomy and diversity, and their importance in marine ecosystems may have been underestimated. In this study, we have charted the progress of oncaeid taxonomy and diversity studies worldwide. We have identified the major challenges faced by the researchers and have described the marine science techniques. We also provide an overview of the distribution and ecology of the family Oncaeidae. Progress has been made toward understanding the distribution, habitat preference, and feeding behavior of oncaeids. The knowledge of oncaeids taxonomy has also been considerably increased by improvements in the research methodology, such as the use of molecular biology techniques and interdisciplinary approaches in tandem with the traditional taxonomic methods.

The Invasive alien species in the Black Sea coast of Georgia

Abstract The aim of the present paper is to compile a list of the invasive alien species on the Black Sea coast of Georgia. The results have been received from an assessment of data collected from different sources. According to recent data, the greatest number of species (36%) has arrived into the Black Sea from the Mediterranean as a consequence of expanding the natural range or coming through the ballast waters. This proportion has increased with the rising water temperatures of the upper layer. Only a few of these species have become abundant and almost none have reached other seas of the Ponto-Caspian. Among these species are the representatives of micro-, phyto- and zooplankton, demersal plankton, macrophytes, zoobenthos and fish.

A cross-sectional study of free-roaming dogs in a Patagonian city: Their distribution and intestinal helminths in relation to socioeconomic aspects of neighborhoods.

Human and dog health are inextricably linked, and although our relationship with dogs brings numerous benefits for our well-being, it is known that they can transmit disease. Bariloche is a Patagonian tourist city with heterogeneous social composition. This cross-sectional study evaluates the population of free-roaming dogs and their intestinal parasites in relation to the socioeconomic level of the city's human population. Census areas were used as survey units, stratified in three levels according to socioeconomic status. The free-roaming dog population was estimated by walking around each census area. Eight fresh feces per census count area were collected and analyzed using coproparasitological flotation tests, and CoproELISA was used to detect Echinococcus sp. A total of 858 free-roaming dogs were registered along 40.9km, with significant differences between socioeconomic strata: the highest numbers were found in the lowest income strata. Of the feces collected, 39.2% tested positive for parasites, those associated with a lower socioeconomic level having higher percentages of positive feces and a greater number of species. Eight species of helminths were found, some of which were zoonotic, such as Echinococcus sp., Toxocara canis, and Dibothriocephalus latus. The presence of parasites can be explained by the number of free-roaming dogs per census count area. The free-roaming dogs generally have owners, and their parasitic infection is strongly associated with the socioeconomic level of the population. The main problem is irresponsible pet care, which generates healthy conditions for both dogs and humans. Thus, both dogs and humans deserve effective ethical public policies.

Quaternary Glauconitization on Gulf of Guinea, Glauconite Factory: Overview of and New Data on Tropical Atlantic Continental Shelves and Deep Slopes

For a long time, particular attention was paid to glauconitization in the surficial sediments lying on the outer continental shelves of present oceans. Subsequently, the processes observed and analyzed may have served as models for studies of glauconite in Cenozoic or even Mesozoic shelf deposits. Access to the sedimentary domains of deep oceans, particularly those of contouritic accumulation fields, has made it possible to discover unexpected processes of glauconitization. Thus, the long-term prevalence of control using fairly high-temperature water has become obsolete, and the prerequisite influence of continental flows has come to be considered on a new scale. Frequently, sediments from contouritic accumulation provide a condensed and undisturbed sedimentary record without periods of sediment erosion. Glauconitic grains could possibly integrate the signatures of bottom-water masses over prolonged periods of time, which, while preventing their use in high-resolution studies, would provide an effective means of yielding reliable average estimates on past εNd signatures of bottom-water masses. In this regard, glauconitic grains are probably better-suited to paleoceanographic reconstructions than foraminifera and leached Fe-oxyhydroxide fractions, which appear to be influenced by sediment redistribution and the presence of terrestrial continental Fe-oxides, respectively. Direct methodological access to the compositions of the semi-confined microenvironments of neoformation has largely renewed the information, chemical or crystallographic, that was previously, and for a long time, restricted to macromeasurements. The various granular supports (mudclasts, fecal pellets, and foraminifera infillings) include inherited 1:1 clays (or Te-Oc; i.e., clay minerals consisting of one tetrahedral sheet and one octahedral sheet, such as kaolinite) that are gradually replaced by 2:1 clays (Te-Oc-Te) dominated first by smectite, and then by glauconite. In small pores, the water’s activity is diminished; as a consequence, the precipitation of a great number of mineral species is thereby made easier, and their stability domains are changed. A specific methodological approach allows the study of the mineralogy and chemistry of the fine-scale mineral phases and to avoid the global aspect of the analytical methods previously used in the initial studies. Wide-field micrographs taken at a mean direct magnification of 100.000 show the intimate and characteristic organization of the main phases that occur in a single grain. One or several “fine” (about 10 nanometers in scale) microchemical analyses can be recorded, and directly coupled with each interesting and well-identified structure image observed in HRTEM.

Adaptive global pathway selection using artificial neural networks: A-priori study

A novel chemistry reduction scheme incorporating neural networks and a pre-existing reduction algorithm called Global Pathway Selection (GPS) is proposed and validated. GPS is a state-of-the-art chemistry reduction tool that can provide accurate predictions for any given detailed mechanism. However, this accuracy becomes limited by the overfitting of some reactions for the entire combustion process. We propose a new adaptive GPS approach that conducts GPS reductions and creates multiple reduced mechanisms. The adaptive GPS method is then used to train a supervised neural network to enable the identification of important species for the given state vector. This network is then used to dynamically update the simulator's reduced mechanism according to any given condition. This method is referred to as supervised learning-aided GPS (SL-GPS) in this study. Because the mechanism is continuously modified to better represent the simulation's state, and each such modification requires only a call of a pre-trained network, this method significantly improves the accuracy of predictions using the reduced mechanisms with reduced computational cost. The adaptive GPS method is tested in 0D simulations of methane combustion using the GRI 3.0 detailed mechanism. The results obtained using the adaptive GPS and SL-GPS are compared to the predictions of the detailed mechanism and classical GPS. The SL-GPS method is shown to perform at greater accuracies than the classic GPS while using fewer species and reactions, and at a similar accuracy to the adaptive GPS with which the neural network was trained. The capabilities of adaptive and SL-GPS methods are even more profound for mechanisms with a greater number of species and reactions, i.e., PCRL-Mech1 mechanism for ethanol combustion which has been used for validation in this study.

An updated checklist of liverworts and hornworts of Malaysia.

An updated checklist of the liverworts and hornworts of Malaysia accepts 773 species and 31 infraspecific taxa of liverworts, in 120 genera and 40 families, and 7 species of hornworts (6 genera, 3 families). The largest family is Lejeuneaceae with 312 species in 30 genera, accounting for 40% of the total number of species. The largest genera are Cololejeunea, Bazzania and Frullania with 90, 61 and 55 species, respectively. The greatest number of species has been recorded from Sabah with 568 species, followed by Pahang and Sarawak with 338 and 265 species, respectively.

Traditional Food and Medicine: Ethno-Traditional Usage of Fish Fauna across the Valley of Kashmir: A Western Himalayan Region

People have traditionally relied on fish to supply their major food and healthcare needs all across the world. However, there has been little focus on the traditional dietary, cultural identity, and integrity of traditional food systems in many rural Himalayan populations. The current study looks into the use of fish in traditional food and foraging practices, as well as its role in local traditional medicine and cultural practices. Semi-structured interviews and group discussions were used to collect data in the years 2020–2021. The data were analyzed using various statistical indices such as the fidelity level (FL), rank order priority (ROP), and relative popularity level (RPL). The data were then classified through a heat map, and ordination techniques were used to refine them even further. The current study identified 20 fish species of five families, with Cyprinidae (70%) as the dominant family. Three unique traditional fish preservation techniques were documented, namely: (1) smoking, (2) sun drying, and (3) pickling. The smoked fish are locally called fari, sun-dried fish are known as hugaad, and pickled fish are gaad anchaar. As a result of rapid modernization, fish has become a symbol of social class in the valley. In total, 17 diseases were identified, with joint pain being treated by the greatest number of species (N = 10). Flesh (43%) was the most commonly used part to treat various diseases. The mode of application of various fishbody parts for treating a variety of diseases was most commonly peroral (65%), followed by topical (35%). Schizopyge niger demonstrated the highest level of fidelity (82%) for joint pain. Schizopygeniger, Schizothorax curvifrons, Catla catla, Schizothorax esocinus, Schizothorax labiatus, and Schizothorax plagiostomus were the most popular (relative popularity level = 1.0). The rank order priority of six species was above 55 (Schizothorax plagiostomus (59.18), Labeo dyocheilus (61.99) Schizothorax labiatus (64.28), Schizothorax esocinus (68.36), Schizothorax curvifrons (73.19), and Schizopyge niger (82)). Two principal groups of six ethno-zoological categories (medicine, food, black magic, poultry, agricultural, and recreational) were identified using cluster analysis. Fish are also important as a source of livelihood and are closely associated with a local ethnic group known as Hanji/Haanz, who have extensive knowledge of ecology of the local fish species. Our research will contribute to filling a knowledge gap in the Kashmir Himalayan region, with policy implications for the protection and preservation of high-quality traditional knowledge for future generations. The findings of this documentation study can be used as an ethnopharmacological foundation for selecting fish in future pharmaceutical research.

Identification, monitoring, and reaction kinetics of reactive trace species using time-resolved mid-infrared quantum cascade laser absorption spectroscopy: development, characterisation, and initial results for the CH&amp;lt;sub&amp;gt;2&amp;lt;/sub&amp;gt;OO Criegee intermediate

Abstract. The chemistry and reaction kinetics of reactive species dominate changes to the composition of complex chemical systems, including Earth's atmosphere. Laboratory experiments to identify reactive species and their reaction products, and to monitor their reaction kinetics and product yields, are key to our understanding of complex systems. In this work we describe the development and characterisation of an experiment using laser flash photolysis coupled with time-resolved mid-infrared (mid-IR) quantum cascade laser (QCL) absorption spectroscopy, with initial results reported for measurements of the infrared spectrum, kinetics, and product yields for the reaction of the CH2OO Criegee intermediate with SO2. The instrument presented has high spectral (&lt; 0.004 cm−1) and temporal (&lt; 5 µs) resolution and is able to monitor kinetics with a dynamic range to at least 20 000 s−1. Results obtained at 298 K and pressures between 20 and 100 Torr gave a rate coefficient for the reaction of CH2OO with SO2 of (3.83 ± 0.63) × 10−11 cm3 s−1, which compares well to the current IUPAC recommendation of 3.70-0.40+0.45 × 10−11 cm3 s−1. A limit of detection of 4.0 × 10−5, in absorbance terms, can be achieved, which equates to a limit of detection of ∼ 2 × 1011 cm−3 for CH2OO, monitored at 1285.7 cm−1, based on the detection path length of (218 ± 20) cm. Initial results, directly monitoring SO3 at 1388.7 cm−1, demonstrate that SO3 is the reaction product for CH2OO + SO2. The use of mid-IR QCL absorption spectroscopy offers significant advantages over alternative techniques commonly used to determine reaction kinetics, such as laser-induced fluorescence (LIF) or ultraviolet absorption spectroscopy, owing to the greater number of species to which IR measurements can be applied. There are also significant advantages over alternative IR techniques, such as step-scan FT-IR, owing to the coherence and increased intensity and spectral resolution of the QCL source and in terms of cost. The instrument described in this work has potential applications in atmospheric chemistry, astrochemistry, combustion chemistry, and in the monitoring of trace species in industrial processes and medical diagnostics.

DIPA-CRISPR is a simple and accessible method for insect gene editing

SummaryCurrent approaches for insect gene editing require microinjection of materials into early embryos. This severely limits the application of gene editing to a great number of insect species, especially to those whose reproduction systems preclude access to early embryos for injection. To overcome these limitations, we report a simple and accessible method for insect gene editing, termed “direct parental” CRISPR (DIPA-CRISPR). We show that injection of Cas9 ribonucleoproteins (RNPs) into the haemocoel of adult females efficiently introduces heritable mutations in developing oocytes. Importantly, commercially available standard Cas9 protein can be directly used for DIPA-CRISPR, which makes this approach highly practical and feasible. DIPA-CRISPR enables highly efficient gene editing in the cockroaches, on which conventional approaches cannot be applied, and in the model beetle Tribolium castaneum. Due to its simplicity and accessibility, DIPA-CRISPR will greatly extend the application of gene editing technology to a wide variety of insects.

Preliminary data on the diet of Chalcides chalcides (Squamata: Scincidae) from Northern Italy

The diet in skinks is known mainly for extra-European species, especially from Australian ones, where these lizards are represented by a great number of species, while, in comparison, data for species from other continents are scarce. The three-toed skink, Chalcides chalcides, is found in a restricted part of northern Africa and in Italy, where it is distributed almost uniformly throughout the peninsula and on the major islands. Although it is well studied for aspects such as morphology and ecology, data concerning trophic preferences are scarce, and available only for the populations of south-central Italy. In this note we report preliminary data about the diet of an Apennine population of the three-toed skink, Chalcides chalcides, at the northern boundary of its distribution area. Faecal contents from 20 individuals were collected in June 2015, obtaining an overall sample of 48 prey items. Araneae constituted the most preyed taxon (over 40%), followed by Hemiptera (35,4%) and other prey taxa (Hymenoptera, Coleoptera, and Dermaptera) in much lower percentages. We found no differences between smaller/younger and larger/older individuals in consumed preys. As well as confirming the general trophic predilection of this skink for spiders, we also found some interesting differences in preyed items with studied populations of south-central Italy.

An investigation of hybrid CPU-GPU solvers for supersonic reacting flow simulation with detailed chemical kinetics

Accurate simulations of supersonic reacting flow require the use of detailed chemical kinetics to capture the complex phenomena such as auto-ignition and broken, thickened flamelets. However, the detailed chemical mechanisms for hydrocarbon fuels used in supersonic combustion typically have a great number of species and reactions. This paper reports on the implementation of a hybrid CPU-GPU solver by using the graphics processing unit (GPU) as a coprocessor to accelerate the computation of chemical source terms in modeling supersonic reacting flows with detailed chemical kinetics. The chemical kinetics are solved explicitly via a fully-coupled method with an implicit scheme. Three parallel strategies with different storage schemes were explored in implementing the highly parallel GPU algorithms for accelerating combustion modeling. Significant acceleration was obtained by using these parallel algorithms for chemical source terms evaluation. In order to verify the viability of the solver, two supersonic combustion flow test cases were conducted. The performance of these algorithms is evaluated by modeling four chemical reaction mechanisms on different grids compared with the CPU-only solver. The computation cost of these algorithms is basically proportional to the size of the grids. The performance gain of these parallel algorithms depends on the size of the reaction mechanism. A maximum speedup factor of over 80 was obtained by modeling the mechanism consisting of 348 species and 2163 reactions. The significant performance improvement provided by these parallel algorithms can provide a significant perspective for designing GPU-accelerated algorithms for applications in simulating supersonic reacting flows.