Gondwanan Origin Research Articles

Contrasting patterns of postglacial range shifts between the northern and southern hemisphere in Herbertus (Herbertaceae, Marchantiophyta)

The leafy liverwort genus Herbertus exhibits considerably variable morphology and widely disjunct distributions in both hemispheres. Here, the biogeographic history of the genus and its phylogenetic relationships with the focus on the taxonomically difficult, northern hemispheric disjunct species, were investigated. We conducted a time-calibrated, molecular-based phylogenetic analysis using psbA, trnL-F, and ITS1-2 loci and different approaches for ancestral range inference of the genus. Herbertus is inferred to have originated in the Cenozoic era about 51 million years ago, in an ancestral area including southern South America, the Neotropics, Oceania, and South-east Asia. The current distribution of the genus is supported to have resulted from long-term in situ persistence, short and long distance dispersals, extinctions and recolonizations. Postglacial range shifts between the southern and northern hemisphere in the genus show distinct patterns. In the southern hemisphere, Herbertus is characterized by in situ persistence, not showing further dispersal until the uplift of the Andean Cordillera. Species of the northern hemisphere showed wide range expansions and repeated recolonizations, including north- and southward dispersals, recolonizations and extinctions. Our results support that the ancestor of South-east Asiatic Herbertus had a Gondwanan origin and arrived in Asia via Indian Plate migration. The uplift of high mountains must have had a strong influence in the diversification and dispersal of the genus. Our results further suggest that climate changes must have had a profound effect on the evolution and biogeography of the species of Herbertus in the northern hemisphere, and might also have influenced the reproductive strategies of the genus. Few genetic differentiations amongst currently recognized species H. aduncus, H. dicranus, H. hutchinsiae, H. stramineus, H. delavayi, and H. kurzii, and amongst H. sendtneri, H. armitanus, and H. circinatus were shown, suggesting that the morphological characters that are currently used for delimiting species should be re-evaluated.

The opsin genes of amazonian cichlids.

Vision is a critical sense for organismal survival with visual sensitivities strongly shaped by the environment. Some freshwater fishes with a Gondwanan origin are distributed in both South American rivers including the Amazon and African rivers and lakes. These different habitats likely required adaptations to murky and clear environments. In this study, we compare the molecular basis of Amazonian and African cichlid fishes' visual systems. We used next-generation sequencing of genomes and retinal transcriptomes to examine three Amazonian cichlid species. Genome assemblies revealed six cone opsin classes (SWS1, SWS2B, SWS2A, RH2B, RH2A and LWS) and rod opsin (RH1). However, the functionality of these genes varies across species with different pseudogenes found in different species. Our results support evidence of an RH2A gene duplication event that is shared across both cichlid groups, but which was probably followed by gene conversion. Transcriptome analyses show that Amazonian species mainly express three opsin classes (SWS2A, RH2A and LWS), which likely are a good match to the long-wavelength-oriented light environment of the Amazon basin. Furthermore, analysis of amino acid sequences suggests that the short-wavelength-sensitive genes (SWS2B, SWS2A) may be under selective pressures to shift their spectral properties to a longer-wavelength visual palette. Our results agree with the 'sensitivity hypothesis' where the light environment causes visual adaptation. Amazonian cichlid visual systems are likely adapting through gene expression, gene loss and possibly spectral tuning of opsin sequences. Such mechanisms may be shared across the Amazonian fish fauna.

Post-Eocene climate change across continental Australia and the diversification of Australasian spiny trapdoor spiders (Idiopidae: Arbanitinae)

The formation and spread of the Australian arid zone during the Neogene was a profoundly transformative event in the biogeographic history of Australia, resulting in extinction or range contraction in lineages adapted to mesic habitats, as well as diversification and range expansion in arid-adapted taxa (most of which evolved from mesic ancestors). However, the geographic origins of the arid zone biota are still relatively poorly understood, especially among highly diverse invertebrate lineages, many of which are themselves poorly documented at the species level. Spiny trapdoor spiders (Idiopidae: Arbanitinae) are one such lineage, having mesic ‘on-the-continent’ Gondwanan origins, while also having experienced major arid zone radiations in select clades. In this study, we present new orthologous nuclear markers for the phylogenetic inference of mygalomorph spiders, and use them to infer the phylogeny of Australasian Idiopidae with a 12-gene parallel tagged amplicon next-generation sequencing approach. We use these data to test the mode and timing of diversification of arid-adapted idiopid lineages across mainland Australia, and employ a continent-wide sampling of the fauna’s phylogenetic and geographic diversity to facilitate ancestral area inference. We further explore the evolution of phenotypic and behavioural characters associated with both arid and mesic environments, and test an ‘out of south-western Australia’ hypothesis for the origin of arid zone clades. Three lineages of Idiopidae are shown to have diversified in the arid zone during the Miocene, one (genus Euoplos) exclusively in Western Australia. Arid zone Blakistonia likely had their origins in South Australia, whereas in the most widespread genus Aganippe, a more complex scenario is evident, with likely range expansion from southern Western Australia to southern South Australia, from where the bulk of the arid zone fauna then originated. In Aganippe, remarkable adaptations to phragmotic burrow-plugging in transitional arid zone taxa have evolved twice independently in Western Australia, while in Misgolas and Cataxia, burrow door-building behaviours have likely been independently lost at least three times in the eastern Australian mesic zone. We also show that the presence of idiopids in New Zealand (Cantuaria) is likely to be the result of recent dispersal from Australia, rather than ancient continental vicariance. By providing the first comprehensive, continental synopsis of arid zone biogeography in an Australian arachnid lineage, we show that the diversification of arbanitine Idiopidae was intimately associated with climate shifts during the Neogene, resulting in multiple Mio-Pliocene radiations.

Isolation of Novel Trypanosomatid, Zelonia australiensis sp. nov. (Kinetoplastida: Trypanosomatidae) Provides Support for a Gondwanan Origin of Dixenous Parasitism in the Leishmaniinae.

The genus Leishmania includes approximately 53 species, 20 of which cause human leishmaniais; a significant albeit neglected tropical disease. Leishmaniasis has afflicted humans for millennia, but how ancient is Leishmania and where did it arise? These questions have been hotly debated for decades and several theories have been proposed. One theory suggests Leishmania originated in the Palearctic, and dispersed to the New World via the Bering land bridge. Others propose that Leishmania evolved in the Neotropics. The Multiple Origins theory suggests that separation of certain Old World and New World species occurred due to the opening of the Atlantic Ocean. Some suggest that the ancestor of the dixenous genera Leishmania, Endotrypanum and Porcisia evolved on Gondwana between 90 and 140 million years ago. In the present study a detailed molecular and morphological characterisation was performed on a novel Australian trypanosomatid following its isolation in Australia’s tropics from the native black fly, Simulium (Morops) dycei Colbo, 1976. Phylogenetic analyses were conducted and confirmed this parasite as a sibling to Zelonia costaricensis, a close relative of Leishmania previously isolated from a reduviid bug in Costa Rica. Consequently, this parasite was assigned the name Zelonia australiensis sp. nov. Assuming Z. costaricensis and Z. australiensis diverged when Australia and South America became completely separated, their divergence occurred between 36 and 41 million years ago at least. Using this vicariance event as a calibration point for a phylogenetic time tree, the common ancestor of the dixenous genera Leishmania, Endotrypanum and Porcisia appeared in Gondwana approximately 91 million years ago. Ultimately, this study contributes to our understanding of trypanosomatid diversity, and of Leishmania origins by providing support for a Gondwanan origin of dixenous parasitism in the Leishmaniinae.

Diversification shifts in leafroller moths linked to continental colonization and the rise of angiosperms.

Tectonic dynamics and niche availability play intertwined roles in determining patterns of diversification. Such drivers explain the current distribution of many clades, whereas events such as the rise of angiosperms can have more specific impacts, such as on the diversification rates of herbivores. The Tortricidae, a diverse group of phytophagous moths, are ideal for testing the effects of these determinants on the diversification of herbivorous clades. To estimate ancestral areas and diversification patterns in Tortricidae, a complete tribal-level dated tree was inferred using molecular markers (one mitochondrial and five nuclear) and calibrated using fossil constraints. We found that Tortricidae diverged from their sister group c. 120Myr ago (Ma) and diversified c. 97Ma, a timeframe synchronous with the rise of angiosperms in the Early-mid Cretaceous. Ancestral areas analysis, based on updated Wallace's biogeographical regions, supports the hypothesis of a Gondwanan origin of Tortricidae in the South American plate. We also detected an increase in speciation rate that coincided with the peak of angiosperm diversification in the Cretaceous. This in turn probably was further heightened by continental colonization of the Palaeotropics when angiosperms became dominant by the end of the Late Cretaceous.

Dichotomy of The Messada Pluton, Serbo-Macedonian Massif, Greece: From Rifting to Subduction

The Messada pluton is a mafic intrusion that is located about 12 km SW of Serres town, (Macedonia Greece) that intrudes the two mica, biotite and the augen gneisses of the Vertiskos formation (Serbo-Macedonian massif). The aim of this study is to investigate, define and evaluate the geochemical characteristics of the pluton in order to determine the geotectonic environment in which the parental magma has been formed. The Mesada pluton is a mid to coarse grained intrusion presenting petrographic variety from diorite and quartz diorite to tonalite and granodiorite. The variety in petrography reflects its chemical inhomogeneity in major and trace elements. It is suggested that parts of pluton have been formed by distinctly different types of magmas originated in diverse geotectonic settings. Those parts of quartz diorite and tonalite composition, present similar geochemical characteristics, LILE/HFSE ratios and negative Nb, but no Ti anomalies in their primitive mantle normalized trace elements spider grams. They exhibit higher HFS values than those of granodioritic composition. Moreover, their ORG normalized spider grams not only suggest that they have been evolved by a common parental magma, but also present the typical characteristics of a “crust dominated” within plate pluton that may have been formed in an early stage during rifting, prior to a subsequent subduction episode. This interpretation may be in accordance with the suggestion for the Gondwanian origin of the more silicic Triassic rift related meta-granites (e.g. Arnea plutonic complex) of the Serbo-Macedonian massif. In contrary; the parts of Mesada pluton of granodioritic composition, exhibit a calc-alkaline to high K calc-alkaline magmatic suite and present higher LILE/HFSE and LREE/HREE ratios, related to a higher crustal component contribution for the magma genesis. Furthermore, their primitive mantle normalized spider grams’ present negative anomalies at Nb and Ti. These characteristics indicate that those granodioritic parts have been formed by the crystallization of a calk-alkaline magma, produced by the partial melting of lower crust, lithospheric mantle and asthenospheric mantle components, in a volcanic arc geo-tectonic setting. Their geochemical characteristics have close similarities to those of the collision related granitoids that have intruded the Serbo- Macedonian during Tertiary.

A new turtle taxon (Podocnemidoidea, Bothremydidae) reveals the oldest known dispersal event of the crown Pleurodira from Gondwana to Laurasia

Pan-Pleurodira is one of the two clades of extant turtles (i.e. Testudines). Its crown group, Pleurodira, has a Gondwanan origin being known from the Barremian. Cretaceous turtle fauna of Gondwana was composed almost exclusively of pleurodires. Extant pleurodires live in relatively warm regions, with a geographical distribution restricted to tropical regions that were part of Gondwana. Although pleurodires were originally freshwater forms, some clades have adapted to a nearshore marine lifestyle, which contributed to their dispersal. However, few lineages of Pleurodira reached Laurasian regions and no representatives have so far been described from the pre-Santonian of Laurasia, where the continental and coastal Cretaceous faunas of turtles consist of clades exclusive to this region. A new turtle, Algorachelus peregrinus gen. et sp. nov., is described here from the southern Laurasian Cenomanian site of Algora in Spain. Numerous remains, including a skull and well-preserved postcranial specimens, are attributed to this species. The abundant shell elements, much more numerous than those known in most members of pleurodiran clade Bothremydidae, allow its variability to be studied. The new taxon represents the oldest evidence of the occurrence of Pleurodira in Laurasia, and is the oldest genus of the abundant and diverse Bothremydodda so far described. Factors such as the relatively high Cenomanian temperatures, the adaptation of this Gondwanan clade to coastal environments, and the geographical proximity between the two landmasses may have contributed to its dispersal. This finding shows that the first dispersals of Pleurodira from Gondwana to Laurasia occurred much earlier than previously thought.http://zoobank.org/urn:lsid:zoobank.org:pub:8FD358A5-53BD-4308-828A-AC6802184185

First Records of the Syringophilid Mites (Acariformes: Prostigmata) Parasitizing Ibises and Spoonbills (Pelecaniformes: Threskiornithidae), With Description of Four New Species.

The parasitic quill mites of the family Syringophilidae (Acariformes: Prostigmata) are recorded on ibises and spoonbills (Pelecaniformes: Threskiornithidae) for the first time. Four new species of the genus Stibarokris Kethley, 1970 are described: 1) S. theristicus Skoracki, Zmudzinski & Unsoeld sp. nov. ex Theristicus caudatus (Boddaert, 1783) from Brazil, 2) S. geronticus Skoracki, Zmudzinski & Unsoeld sp. nov. ex Geronticus calvus (Boddaert, 1783) from South Africa, 3) S. brevisetosus Skoracki & Zmudzinski sp. nov. ex Plegadis falcinellus (L., 1766) from Turkey, and 4) S. plataleus Skoracki & Zmudzinski sp. nov. ex Platalea leucorodia L., 1758 from Austria. Additionally, a key to all described species in the genus is presented, and hypothesis of the Gondwanan origin of syringophilids associated with ibises and spoonbills is briefly discussed.

Aporosa Blume from the paleoequatorial rainforest of Bikaner, India: Its evolution and diversification in deep time

The Gondwanan origin, northward migration and subsequent collision with Asia means that the Indian subcontinent is of particular interest regarding the origin and dispersal of numerous plants and animal species. With this in mind, we describe a fossil leaf of Aporosa Blume (Phyllanthaceae) from the Paleogene of the Indian subcontinent and discuss its evolution and diversification with respect to the moving Indian plate and its connection with Southeast Asia since the early Cenozoic. At present, Aporosa Blume is confined to Southeast Asia with a few species in India and New Guinea. It is represented by six endemic species growing in the evergreen forests of India and Sri Lanka, including Aporosa acuminata Thwaites, which is morphologically close to the here described fossil from Bikaner, Rajasthan, India. From the age of the fossil and the distribution of its modern comparable form, it is assumed that Aporosa originated on the Indian subcontinent and then was distributed to Southeast Asia, supporting the ‘Out of India’ hypothesis. Diversification of the genus might have taken place either in the Paleogene or Neogene. Our fossil leaf material also indicates the existence of palaeoequatorial (<10° N) tropical rain forests in western India during the Paleogene in contrast to dry and desertic climate occurring today.

A historical biogeography of megadiverse Sericini-another story "out of Africa"?

Megadiverse insect groups present special difficulties for biogeographers because poor classification, incomplete knowledge of taxonomy, and many undescribed species can introduce a priori sampling bias to any analysis. The historical biogeography of Sericini, a tribe of melolonthine scarabs comprising about 4000 species, was investigated using the most comprehensive and time-calibrated molecular phylogeny available today. Problems arising through nomenclatural confusion were overcome by extensive sampling (665 species) from all major lineages of the tribe. A West Gondwanan origin of Sericini (c. 112 Ma) was reconstructed using maximum parsimony, maximum-likelihood and model-based ancestral area estimation. Vicariance in the tribe's earliest history separated Neotropical and Old World Sericini, whereas subsequent lower Cretaceous biogeography of the tribe was characterized by repeated migrations out of Africa, resulting in the colonization of Eurasia and Madagascar. North America was colonized from Asia during the Cenozoic and a lineage of "Modern Sericini" reinvaded Africa. Diversification dynamics revealed three independent shifts to increased speciation rates: in African ant-adapted Trochalus, Oriental Tetraserica, and Asian and African Sericina. Southern Africa is proposed as both cradle and refuge of Sericini. This area has retained many old lineages that portray the evolution of the African Sericini fauna as a series of taxon pulses.

Gondwanian relicts and oceanic dispersal in a cosmopolitan radiation of euedaphic ground beetles

Anillini are a tribe of minute, euedaphic ground beetles (Carabidae) characterized by the loss of eyes, loss of wings and high levels of local endemism. Despite their presumed low dispersal, they have a nearly cosmopolitan distribution, including isolated islands such as New Zealand and New Caledonia. We used a time calibrated molecular phylogeny to test, first, if the tribe as currently understood is monophyletic and, second, whether the time of divergence is compatible with an early vicariant diversification after the breakup of Gondwana. We sequenced portions of 6 mitochondrial and 3 nuclear genes for 66 specimens in 17 genera of Anillini plus 39 outgroups. The resulting phylogenetic tree was used to estimate the time of diversification using two independent calibration schemes, by applying molecular rates for the related genus Carabus or by dating the tree with fossil and geological information. Rates of molecular evolution and lineage ages were mostly concordant between both calibration schemes. The monophyly of Anillini was well-supported, and its age was consistent with a Gondwanian origin of the main lineages and an initial diversification at ca. 100Ma representing the split between the eyed Nesamblyops (New Zealand) and the remaining Anillini. The subsequent diversification, including the split of the Nearctic Anillinus and the subsequent splits of Palaearctic lineages, was dated to between 80 and 100Ma and thus was also compatible with a tectonic vicariant origin. On the contrary, the estimated age of the New Caledonian blind Orthotyphlus at ca. 30±20Ma was incompatible with a vicariant origin, suggesting the possibility of trans-oceanic dispersal in these endogean beetles.

Position and Relationships of Ripiphoridae (Coleoptera: Tenebrionoidea) Inferred from Ribosomal and Mitochondrial Molecular Markers

Abstract. Ripiphoridae phylogeny inferred from rRNA and mtDNA markers and 23 taxa from four subfamilies is presented. Despite much denser sampling than previous studies and completeness of the assembled dataset, the phylogenetic signal from molecular markers remains ambiguous. The dataset does not support monophyly of Ripiphoridae and suggests the Ripiphoridae + Mordellidae clade with ripiphorid lineages forming gradual splits basally to Mordellidae. Previous hypotheses on relationships of Meloidae and Ripiphoridae and a single origin of developmental modifications are refuted. The ripiphorid subfamilies are regularly recovered and we found Pelecotominae and Ptilophorinae among deep splits. Ripidiinae, despite morphological divergence, are regularly found within the ripiphorid+mordellid clade in a sister relationships to Ripiphorinae + Mordellidae. Molecular phylogeny of Ptilophorus Dejean supports a hypothesis about their Gondwanan origin and subsequent dispersal to the Northern hemisphere. The clade Mac...

The Brachodidae of Sub-Saharan Africa (Lepidoptera, Cossoidea),with implications for the origin of the family.

Brachodidae are a small family of day-flying, rarely collected cossoid moths. Here, the Brachodidae fauna of Sub-Saharan Africa and the neighboring Arabian Peninsula is reviewed with special attention to the species of the subfamily Brachodinae. The origin of the African Brachodinae and their relationship to the Palaearctic genus Brachodes are discussed, and a Gondwanan origin of the family Brachodidae sensu stricto is proposed. A total of 34 brachodid species are considered in this study, most of which are figured. Two new genera, Archaeotychia gen. nov. (type species Atychia quiris Felder & Rogenhofer, 1875) and Nothobrachodes gen. nov. (type species Atychia infanda Meyrick, 1920) are described. Furthermore, 12 species are described as new to science: Archaeotychia semicuprea sp. nov., Archaeotychia dicksoni sp. nov., Archaeotychia khoisanorum sp. nov., Archaeotychia krooni sp. nov., Archaeotychia dentata sp. nov., Phycodes nigeriana sp. nov., Nigilgia scoblei sp. nov., Nigilgia agassizi sp. nov., Nigilgia ruwenzoriensis sp. nov., Nigilgia megabella sp. nov., Nigilgia arcana sp. nov. and Nigilgia crocea sp. nov. Moreover, Atychia metaspila Meyrick, 1926 syn. nov. is established as a new synonym of Archaeotychia albiciliata (Walsingham, 1891), and Atychia nycteropis Meyrick, 1920 syn. nov. as a new synonym of Nothobrachodes infanda (Meyrick, 1920). Atractoceros xanthoprocta (Meyrick, 1914) is transferred to the subfamily Phycodinae.

A time-calibrated phylogeny of southern hemisphere stoneflies: Testing for Gondwanan origins

For more than two centuries biogeographers have attempted to explain why terrestrial or freshwater lineages have geographic distributions broken by oceans, with these disjunct distributions either attributed to vicariance associated with Gondwanan fragmentation or trans-oceanic dispersal. Stoneflies (order: Plecoptera) are a widespread order of freshwater insects whose poor dispersal ability and intolerance for salt water make them ideal candidates for Gondwanan relicts – taxa whose distribution can be explained by vicariant isolation driven by the breakup of Gondwana. Here we reconstruct the phylogenetic relationships among southern hemisphere stoneflies (5 families; 86 genera) using 2864bp of mitochondrial (COI) and nuclear (18S, H3) DNA, with a calibrated relaxed molecular clock used to estimate the chronology of diversification. Our analysis suggests that largely antitropical stonefly sub-orders, Arctoperlaria (northern hemisphere) and Antarctoperlaria (southern hemisphere), were formed approximately 121Ma (95% prior probability distribution 107–143Ma), which may reflect the vicariant rifting of the supercontinent Pangaea. Subsequently, we infer that a single Arctoperlaria lineage has dispersed into southern hemisphere 76Ma (95% range 65–98Ma). The majority of divergences between South American and Australian stonefly lineages appear to coincide with the opening of Drake Passage around 40Ma, suggesting vicariant isolation of these landmasses may be responsible for these biogeographic disjunctions. In contrast, divergences between New Zealand lineages and their sister taxa appear to post-date vicariant timeframes, implying more recent dispersal events.

A large-clawed theropod (Dinosauria: Tetanurae) from the Lower Cretaceous of Australia and the Gondwanan origin of megaraptorid theropods

Megaraptoridae comprises a clade of enigmatic Gondwanan theropods with characteristic hypertrophied claws on the first and second manual digits. The majority of megaraptorids are known from South America, although a single genus (Australovenator) plus additional indeterminate material is also known from Australia. This clade has a controversial placement among theropods, and recently has been interpreted alternatively as a carcharodontosaurian or a tyrannosauroid lineage. We describe new fragmentary but associated postcranial remains from the opal fields of Lightning Ridge (middle-Albian, Griman Creek Formation) in north-central New South Wales. The new unnamed taxon exhibits a number of unusual features that suggest the presence of a hitherto unrecognised Australian megaraptorid. From an Australian perspective, the Lightning Ridge taxon predates Australovenator by ca. 10Ma and is minimally coeval with megaraptoran material reported from the Eumeralla Formation of Victoria (but potentially 6.1–9.5Ma younger). It is also notable as the largest predatory dinosaur yet identified from Australia and is only the second theropod known from more than a single element. A Bayesian phylogenetic approach integrating morphological, stratigraphic and palaeogeographic information tested both the carcharodontosaurian and tyrannosauroid placements for Megaraptora. Regardless of the preferred placement among Tetanurae, rigorous palaeobiogeographic analyses support an Asian origin of Megaraptora in the latest Jurassic (about 150–135Ma), an Early Cretaceous (about 130–121Ma) divergence of the Gondwanan lineage leading to Megaraptoridae, and an Australian root for megaraptorid radiation. These results indicate that Australia's Cretaceous dinosaur fauna did not comprise simply of immigrant taxa but was a source for complex two-way interchange between Australia–Antarctica–South America leading to the evolution of at least one group of apex predatory dinosaurs in Gondwana.

Interpreting the modern distribution of Myrtaceae using a dated molecular phylogeny

The angiosperm family Myrtaceae has extant and fossil taxa from all southern continents and is assumed to be of Gondwanan origin. Many modern groups contain sister taxa that have disjunct transoceanic distributions, which can be interpreted as a result of either vicariance or long-distance dispersal and establishment (LDDE). Further, some Myrtaceae groups occur on Pacific islands with enigmatic geological histories. We tested hypotheses of vicariance and LDDE by estimating divergence times using a relaxed molecular clock calibrated with 12 fossils. In total, 88 genera and 202 species were sampled, representing both subfamilies and all tribes of Myrtaceae. We reconstructed the family as Gondwanan in origin. Of the 22 geographically disjunct sister groups in our study, up to six are potentially explained as the product of vicariance, three resulting from overland dispersal via new land connections, and 13 due to LDDE events. Nine of the 13 hypothesized LDDE events occurred in fleshy-fruited taxa. Our results indicate that most of the transoceanic distribution patterns in Myrtaceae have occurred since the Miocene due to LDDE, whereas inferred vicariance events all occurred before the Late Eocene. There are many instances of sister relationships between species-poor and species-rich groups in Myrtaceae, and at least three occurrences of geographically isolated taxa on long branches of the phylogeny (Arillastrum, Myrtus, and Tepualia), whose modern-day distributions are difficult to explain without additional fossil or geological evidence.

Long-distance dispersal and speciation of Australasian and American species of Cortinarius sect. Cortinarius

We present a multigene phylogeny (partial nuc rDNA and RPB2) of Cortinarius sect. Cortinarius (i.e. the C. violaceus group), which reveals eight species distributed in Europe, Australasia, South America, Central America and North America. Relaxed molecular clock analyses suggested that diversification began during the Miocene, thus rejecting more ancient Gondwanan origin scenarios among the taxa currently occurring in the northern and southern hemispheres. There was strong support for an Australasian origin of the C. violaceus group with initial dispersal to the Neotropics, followed by migration into North America and Europe. A dispersal-extinction cladogenesis model that includes a parameter for founder effects was the most highly supported biogeographic model in the program BioGeoBEARS. A maximum likelihood analysis showed the most recent common ancestor of sect. Cortinarius was an angiosperm ectomycorrhizal associate. Ancestral associations at the plant family level, however, were ambiguous. Of eight recovered species-level lineages, C. violaceus is the only one that associates with Pinaceae and the only species to associate with both Pinaceae and angiosperms. This analysis showed that long-distance dispersal and founder event speciation have been important factors during evolution of the C. violaceus group.

Ecology of streams in a biogeographic isolate—the Queensland Wet Tropics, Australia

AbstractGlobal studies of streams are needed to develop general ecosystem and management models. We reviewed research that tested ecological models in streams of the Queensland Wet Tropics bioregion (QWT), which makes up 0.26% of Australia but supports distinctive and high biodiversity, most of which is of Gondwanan or marine origin. QWT streams have seasonal but perennial flow, high insolation, and higher diversity of riparian vegetation, invertebrates, and fish than temperate streams. Consistent physical conditions sustain biological processes through the year, and predictable wet seasons, but unpredictable floods, have shaped a resilient and opportunistic biota. Stream food webs are dominated by predators, and prey turnover is rapid. Small streams are heterotrophic and become autotrophic as canopies open in larger streams. Predation and competition influence assemblage composition most in the dry season, when habitats contract and densities increase. Riparian clearing, weed invasion, and agricultural c...

A review of the systematics and taxonomy of Pythonidae: an ancient serpent lineage

Here we review research over the past quarter century regarding the systematics and taxonomy of an ancient, popular and economically valuable group of snakes referred to as pythons (Serpentes, Pythonidae). All recent phylogenetic studies recognize the pythons as monophyletic; however, the phylogenetic relationships at supraspecific levels are conflicting, and many of the relationships recovered are paraphyletic. We identify several taxonomic changes as necessary to clarify supraspecific relationships and which resolve the issue of paraphyly recovered in several studies. Overall, our review of the phylogenetic systematics of pythons points to considerable incongruence among recovered relationships. Instances of paraphyly emerge, low node support is detected, and terminal taxa are unstable across phylogenetic hypotheses. We thus recognize that pythonid gene trees have been unable, for various reasons, to reveal the true species tree. This occurrence is not unexpected and can arise from incomplete taxon sampling, long-branch attraction and repulsion, homoplasy, ancestral polymorphism, and, more notably, the anomaly zone. These phenomena ultimately yield incomplete lineage sorting, or the failure of lineages to coalesce over evolutionary time. We discuss future directions to resolve these troubling issues. Without resolution, adaptive hypotheses about pythons will be limited, including hypotheses of geographic origin. Analyses that recover the clade Python as sister to the Indo-Australian clade are interpreted to support a Laurasian origin of Pythonidae. In contrast, a Gondwanan origin is supported when the Indo-Australian clade is recovered as basal to the Python clade. We describe the morphology of two recently proposed genera. Finally, we designate and describe the neotype for Morelia azurea and offer a list of the currently accepted python species and their taxonomy.

Molecular phylogenetic analysis supports a Gondwanan origin of the Hyriidae (Mollusca: Bivalvia: Unionida) and the paraphyly of Australasian taxa

The freshwater mussel family Hyriidae (Mollusca: Bivalvia: Unionida) has a disjunct trans-Pacific distribution in Australasia and South America. Previous phylogenetic analyses have estimated the evolutionary relationships of the family and the major infra-familial taxa (Velesunioninae and Hyriinae: Hyridellini in Australia; Hyriinae: Hyriini, Castaliini, and Rhipidodontini in South America), but taxon and character sampling have been too incomplete to support a predictive classification or allow testing of biogeographical hypotheses. We sampled 30 freshwater mussel individuals representing the aforementioned hyriid taxa, as well as outgroup species representing the five other freshwater mussel families and their marine sister group (order Trigoniida). Our ingroup included representatives of all Australian genera. Phylogenetic relationships were estimated from three gene fragments (nuclear 28S, COI and 16S mtDNA) using maximum parsimony, maximum likelihood, and Bayesian inference, and we applied a Bayesian relaxed clock model calibrated with fossil dates to estimate node ages. Our analyses found good support for monophyly of the Hyriidae and the subfamilies and tribes, as well as the paraphyly of the Australasian taxa (Velesunioninae, (Hyridellini, (Rhipidodontini, (Castaliini, Hyriini)))). The Hyriidae was recovered as sister to a clade comprised of all other Recent freshwater mussel families. Our molecular date estimation supported Cretaceous origins of the major hyriid clades, pre-dating the Tertiary isolation of South America from Antarctica/Australia. We hypothesize that early diversification of the Hyriidae was driven by terrestrial barriers on Gondwana rather than marine barriers following disintegration of the super-continent.