Abstract This manuscript explores the divergence of the Vertical Total Electron Content (VTEC) estimated from Global Navigation Satellite System (GNSS) measurements using global, regional, and International Reference Ionosphere (IRI) models over low to high latitude regions during various magnetic activity. The VTEC is estimated using a territorial network consisting of 7 GNSS stations in Egypt and 10 GNSS stations from the International GNSS Service (IGS) Global network. The impact of magnetic activity on VTEC is investigated. Due to the deficiency of IGS receivers in north Africa and the shortage of GNSS measurements, an extra high interpolation is done to cover the deficit of data over North Africa. A MATLAB code was created to produce VTEC maps for Egypt utilizing a territorial network contrasted with global maps of VTEC, which are delivered by the Center for Orbit Determination in Europe (CODE). Thus we can have genuine VTEC maps estimated from actual GNSS measurements over any region of North Africa. A Spherical Harmonics Expansion (SHE) equation was modelled using MATLAB and called Local VTEC Model (LVTECM) to estimate VTEC values using observations of dual-frequency GNSS receivers. The VTEC calculated from GNSS measurement using LVTECM is compared with CODE VTEC results and IRI-2016 VTEC model results. The analysis of outcomes demonstrates a good convergence between VTEC from CODE and estimated from LVTECM. A strong correlation between LVTECM and CODE reaches about 96 % and 92 % in high and low magnetic activity, respectively. The most extreme contrasts are found to be 2.5 TECu and 1.3 TECu at high and low magnetic activity, respectively. The maximum discrepancies between LVTECM and IRI-2016 are 9.7 TECu and 2.3 TECu at a high and low magnetic activity. Variation in VTEC due to magnetic activity ranges from 1–5 TECu in moderate magnetic activity. The estimated VTEC from the regional network shows a 95 % correlation between the estimated VTEC from LVTECM and CODE with a maximum difference of 5.9 TECu.
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